Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001973

Physical Location & Seq

Genomic Coordinates Reverse (-)

44770783 .. 44772990

Gene Structure 2208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1320300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGGTAGTCTCTACCGTCTTCTCAAGAGAAAGGTGAAAGGATCTAGCTTGGATGGCAAGGCATCCAACGGGAGAAAGAGTGGAATTGGAAGCAGCTCTGGTGGAAAACAAGGAATGGCTGATGCTCTAGCAGAGATTACAAAGAGATGTTCAGAAGTATGCAAAGCCTATCACGGAAATGAGATAAGAAGAGAATGGCTTCGACAAGGAAAAGAAATGAGTGGTTTTACCGAAAGGAGAATCTACAAAGCGGTGGAATCCACGGCCACTGAGATTTTCCTGAGGCCTTCAGCCCAGGCCAGTTCCAGCCCATGGTATAAAGCCCAAAGTTCTGCTGCGGTCACAGGGCATACTCCTCCTATATTGAGTCCAAAGCCCATGATCCATCTTCCACTGTCATCCCTAAGCAAACCCCCTCCTGTGGCAATACCCGCAATTCCCCTTACACTACCATCTGTATTAAGTTTGACCCAGCCCGAATTTAATCATGGTTCTTTCAAAACAAAAGACATGAATGGGTTGATGCAGTTTCACAAGAAAGTCGAATCCGTCCTTGAACACTTGACTGATGAGTCACAGGTACTCTCCAGGTTTGAAGGGTTCCCAACAAAGAAGTTGGAAGCAATAAGGATGGCAGCAGCACTACACACAAATTTAAATACAATGCTCAATGAACTACAAAACTGGAAACTAGTGGTTCCATTGGGTCAGCTCCTTGACAAGGCCGAACGCTACTTTGATAAAGGAGAAATAGACACGATGGAACGAACTGAAGACGACGAAGCCAAGAAGTTTCAGAGCCAGAATATCCATTTCGACTTTAATATCCTCATCCGGATCAAAGAAGCCATGGTGGATGTCTCCTCAAGCTGCATGGAGATGGCACTAAAGAAGCAAAGGCCGCAGGTAAGACTGGAACAAAAACTGATCAGAAGCAAACAAAAGATTTGTGTGAAAATGCAGCGGAAGGCTTTTCAGTTTGCTTTTAGGGTTTACACATTCGCTGGTGGACATGATGACCGGGCTGACATGCTCACAAAAGAACTGGCTAAAGAAATCGAGTCTGAAGGTCCCCAACATAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231

Pfam Domains

Protein Families

No domains found.

Protein Analysis

362

Amino Acids

40.61

Weight (kDa)

9.52

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11070 AT1G11070 AT1G11070 AT1G11070 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT4G04980 AT4G04980 AT4G04980
malus_domestica	MD05G1320300.v1.1 MD05G1320400.v1.1 MD05G1320600.v1.1 MD05G1320700.v1.1 MD05G1320900.v1.1 MD10G1299500.v1.1
prunus_persica	Prupe.4G041300_v2.0.a1 Prupe.4G041300_v2.0.a1
pyrus_communis	pycom05g29550 pycom05g29570
rosa_chinensis	RchiOBHm_Chr5g0007591 RchiOBHm_Chr5g0007601 RchiOBHm_Chr5g0021911 RchiOBHm_Chr7g0235111
rosa_laevigata	RLG00000013181 RLG00000031475
rosa_multiflora	Rmu_sc0015365.1_g000002 Rmu_sc0042291.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068760 Rroxscaffold_1G00068770 Rroxscaffold_4G00304220
rosa_rugosa	Rorug04G0429100
rosa_samantha	Rh4DG240000 Rh5AG057100 Rh5AG057200 Rh5BG054200 Rh5CG064000 Rh5CG064100 Rh5DG053300 Rh6BG518400 Rh6CG523900
rosa_wichuraiana	Rw5G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	571
Acc36I	ACCTGC	1 cut(s)	895
AccB7I	CCANNNNNTGG	1 cut(s)	312
AccIII	TCCGGA	1 cut(s)	834
AciI	CCGC	5 cut(s)	251, 338, 432, 902, 964
AclWI	GGATC	3 cut(s)	49, 376, 845
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	2 cut(s)	479, 652
AcuI	CTGAAG	3 cut(s)	273, 792, 1086
AfaI	GTAC	1 cut(s)	582
AfiI	CCNNNNNNNGG	3 cut(s)	312, 421, 721
AgsI	TTSAA	3 cut(s)	499, 557, 596
AhlI	ACTAGT	1 cut(s)	691
AjnI	CCWGG	2 cut(s)	294, 587
AluBI	AGCT	4 cut(s)	48, 96, 712, 870
AluI	AGCT	4 cut(s)	48, 96, 712, 870
Alw26I	GTCTC	2 cut(s)	14, 865
AlwI	GGATC	3 cut(s)	49, 376, 845
Aor13HI	TCCGGA	1 cut(s)	834
AoxI	GGCC	5 cut(s)	264, 284, 297, 723, 899
ApeKI	GCWGC	6 cut(s)	93, 335, 635, 638, 870, 961
ApoI	RAATTY	2 cut(s)	479, 652
Asp700I	GAANNNNTTC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	1070
AsuC2I	CCSGG	1 cut(s)	1022
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	1070
AxyI	CCTNAGG	1 cut(s)	281
BbsI	GAAGAC	2 cut(s)	11, 780
BbvI	GCAGC	6 cut(s)	105, 322, 647, 650, 857, 973
BccI	CCATC	6 cut(s)	47, 393, 460, 625, 754, 874
BceAI	ACGGC	1 cut(s)	279
BciT130I	CCWGG	2 cut(s)	296, 589
BclI	TGATCA	1 cut(s)	927
BcnI	CCSGG	1 cut(s)	1022
BcoDI	GTCTC	2 cut(s)	14, 865
BcuI	ACTAGT	1 cut(s)	691
BfaI	CTAG	3 cut(s)	45, 128, 692
BfuAI	ACCTGC	1 cut(s)	895
BisI	GCNGC	7 cut(s)	94, 336, 636, 639, 871, 902, 962
BlsI	GCNGC	7 cut(s)	95, 337, 637, 640, 872, 903, 963
Bme1390I	CCNGG	3 cut(s)	296, 589, 1022
Bme18I	GGWCC	1 cut(s)	1070
BmgT120I	GGNCC	1 cut(s)	1070
BmiI	GGNNCC	3 cut(s)	602, 699, 1072
BmrFI	CCNGG	3 cut(s)	296, 589, 1022
BmsI	GCATC	3 cut(s)	71, 112, 513
BpiI	GAAGAC	2 cut(s)	11, 780
BpmI	CTGGAG	1 cut(s)	571
Bpu10I	CCTNAGC	1 cut(s)	404
BpuEI	CTTGAG	2 cut(s)	8, 850
BpuMI	CCSGG	1 cut(s)	1022
BsaJI	CCNNGG	4 cut(s)	261, 294, 311, 849
BsaWI	WCCGGW	1 cut(s)	834
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	3 cut(s)	312, 421, 721
Bse1I	ACTGG	4 cut(s)	300, 689, 918, 1050
Bse21I	CCTNAGG	1 cut(s)	281
BseAI	TCCGGA	1 cut(s)	834
BseBI	CCWGG	2 cut(s)	296, 589
BseDI	CCNNGG	4 cut(s)	261, 294, 311, 849
BseGI	GGATG	6 cut(s)	58, 62, 398, 636, 831, 862
BseLI	CCNNNNNNNGG	3 cut(s)	312, 421, 721
BseMII	CTCAG	2 cut(s)	261, 272
BseNI	ACTGG	4 cut(s)	300, 689, 918, 1050
BseRI	GAGGAG	2 cut(s)	345, 853
BseXI	GCAGC	6 cut(s)	105, 322, 647, 650, 857, 973
BseYI	CCCAGC	1 cut(s)	471
BshFI	GGCC	5 cut(s)	266, 286, 299, 725, 901
BsiSI	CCGG	2 cut(s)	835, 1021
BslFI	GGGAC	1 cut(s)	1056
BslI	CCNNNNNNNGG	3 cut(s)	312, 421, 721
BsmAI	GTCTC	2 cut(s)	14, 865
BsmFI	GGGAC	1 cut(s)	1056
BsnI	GGCC	5 cut(s)	266, 286, 299, 725, 901
Bsp13I	TCCGGA	1 cut(s)	834
Bsp143I	GATC	4 cut(s)	41, 381, 837, 927
Bsp19I	CCATGG	2 cut(s)	311, 849
BspACI	CCGC	5 cut(s)	251, 338, 432, 902, 964
BspANI	GGCC	5 cut(s)	266, 286, 299, 725, 901
BspCNI	CTCAG	2 cut(s)	262, 273
BspEI	TCCGGA	1 cut(s)	834
BspLI	GGNNCC	3 cut(s)	602, 699, 1072
BspMI	ACCTGC	1 cut(s)	895
BspPI	GGATC	3 cut(s)	49, 376, 845
BsrI	ACTGG	4 cut(s)	300, 689, 918, 1050
BssECI	CCNNGG	4 cut(s)	261, 294, 311, 849
BssMI	GATC	4 cut(s)	41, 381, 837, 927
BssT1I	CCWWGG	2 cut(s)	311, 849
Bst2UI	CCWGG	2 cut(s)	296, 589
Bst4CI	ACNGT	2 cut(s)	17, 396
Bst6I	CTCTTC	1 cut(s)	184
BstDEI	CTNAG	3 cut(s)	270, 281, 404
BstDSI	CCRYGG	3 cut(s)	261, 311, 849
BstENI	CCTNNNNNAGG	1 cut(s)	719
BstF5I	GGATG	6 cut(s)	58, 62, 398, 636, 831, 862
BstKTI	GATC	4 cut(s)	44, 384, 840, 930
BstMAI	GTCTC	2 cut(s)	14, 865
BstMBI	GATC	4 cut(s)	41, 381, 837, 927
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 431, 901
BstNI	CCWGG	2 cut(s)	296, 589
BstNSI	RCATGY	1 cut(s)	1033
BstSCI	CCNGG	3 cut(s)	294, 587, 1020
BstV1I	GCAGC	6 cut(s)	105, 322, 647, 650, 857, 973
BstV2I	GAAGAC	2 cut(s)	11, 780
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
Bsu36I	CCTNAGG	1 cut(s)	281
BsuRI	GGCC	5 cut(s)	266, 286, 299, 725, 901
BtgI	CCRYGG	3 cut(s)	261, 311, 849
BtsCI	GGATG	6 cut(s)	58, 62, 398, 636, 831, 862
BtsIMutI	CAGTG	2 cut(s)	267, 392
BveI	ACCTGC	1 cut(s)	895
Cfr13I	GGNCC	1 cut(s)	1070
Csp6I	GTAC	1 cut(s)	581
CviAII	CATG	8 cut(s)	312, 379, 488, 511, 850, 874, 1013, 1030
CviQI	GTAC	1 cut(s)	581
DdeI	CTNAG	3 cut(s)	270, 281, 404
DpnI	GATC	4 cut(s)	43, 383, 839, 929
DpnII	GATC	4 cut(s)	41, 381, 837, 927
DraI	TTTAAA	1 cut(s)	657
DrdI	GACNNNNNNGTC	1 cut(s)	571
DseDI	GACNNNNNNGTC	1 cut(s)	571
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco130I	CCWWGG	2 cut(s)	311, 849
Eco147I	AGGCCT	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	1070
Eco57I	CTGAAG	3 cut(s)	273, 792, 1086
Eco81I	CCTNAGG	1 cut(s)	281
EcoNI	CCTNNNNNAGG	1 cut(s)	719
EcoO109I	RGGNCCY	1 cut(s)	1070
EcoRII	CCWGG	2 cut(s)	294, 587
EcoT14I	CCWWGG	2 cut(s)	311, 849
ErhI	CCWWGG	2 cut(s)	311, 849
FaeI	CATG	8 cut(s)	315, 382, 491, 514, 853, 877, 1016, 1033
FaqI	GGGAC	1 cut(s)	1056
FatI	CATG	8 cut(s)	311, 378, 487, 510, 849, 873, 1012, 1029
FauI	CCCGC	1 cut(s)	439
FbaI	TGATCA	1 cut(s)	927
Fnu4HI	GCNGC	7 cut(s)	94, 336, 636, 639, 871, 902, 962
FokI	GGATG	6 cut(s)	49, 65, 385, 643, 818, 869
Fsp4HI	GCNGC	7 cut(s)	94, 336, 636, 639, 871, 902, 962
FspBI	CTAG	3 cut(s)	45, 128, 692
GluI	GCNGC	7 cut(s)	94, 336, 636, 639, 871, 902, 962
GsaI	CCCAGC	1 cut(s)	475
GsuI	CTGGAG	1 cut(s)	571
HaeIII	GGCC	5 cut(s)	266, 286, 299, 725, 901
HapII	CCGG	2 cut(s)	835, 1021
Hin1II	CATG	8 cut(s)	315, 382, 491, 514, 853, 877, 1016, 1033
HinfI	GANTC	6 cut(s)	240, 257, 367, 545, 572, 1061
HpaII	CCGG	2 cut(s)	835, 1021
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	2 cut(s)	994, 1010
Hpy188I	TCNGA	4 cut(s)	154, 798, 932, 1066
Hpy188III	TCNNGA	3 cut(s)	25, 280, 835
Hpy8I	GTNNAC	2 cut(s)	994, 1010
Hpy99I	CGWCG	1 cut(s)	782
HpyAV	CCTTC	4 cut(s)	297, 590, 961, 1061
HpyCH4III	ACNGT	2 cut(s)	17, 396
HpyCH4V	TGCA	4 cut(s)	162, 526, 873, 961
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 431, 901
HpyF3I	CTNAG	3 cut(s)	270, 281, 404
Hsp92II	CATG	8 cut(s)	315, 382, 491, 514, 853, 877, 1016, 1033
Kpn2I	TCCGGA	1 cut(s)	834
Ksp22I	TGATCA	1 cut(s)	927
Kzo9I	GATC	4 cut(s)	41, 381, 837, 927
LmnI	GCTCC	1 cut(s)	717
Lsp1109I	GCAGC	6 cut(s)	105, 322, 647, 650, 857, 973
LweI	GCATC	3 cut(s)	71, 112, 513
MaeI	CTAG	3 cut(s)	45, 128, 692
MaeIII	GTNAC	2 cut(s)	340, 573
MalI	GATC	4 cut(s)	43, 383, 839, 929
MboI	GATC	4 cut(s)	41, 381, 837, 927
MboII	GAAGA	4 cut(s)	11, 201, 380, 785
MflI	RGATCY	1 cut(s)	41
MluCI	AATT	4 cut(s)	84, 435, 479, 652
MlyI	GAGTC	3 cut(s)	376, 581, 1070
MmeI	TCCRAC	2 cut(s)	90, 597
MnlI	CCTC	5 cut(s)	276, 366, 426, 839, 874
MroI	TCCGGA	1 cut(s)	834
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	4 cut(s)	461, 483, 656, 822
MslI	CAYNNNNRTG	2 cut(s)	177, 878
MspA1I	CMGCKG	1 cut(s)	964
MspI	CCGG	2 cut(s)	835, 1021
MspR9I	CCNGG	3 cut(s)	296, 589, 1022
MvaI	CCWGG	2 cut(s)	296, 589
MwoI	GCNNNNNNNGC	3 cut(s)	54, 431, 901
NciI	CCSGG	1 cut(s)	1022
NcoI	CCATGG	2 cut(s)	311, 849
NdeII	GATC	4 cut(s)	41, 381, 837, 927
NlaIII	CATG	8 cut(s)	315, 382, 491, 514, 853, 877, 1016, 1033
NlaIV	GGNNCC	3 cut(s)	602, 699, 1072
NmuCI	GTSAC	2 cut(s)	340, 573
NspI	RCATGY	1 cut(s)	1033
PceI	AGGCCT	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	3 cut(s)	240, 257, 545
PflMI	CCANNNNNTGG	1 cut(s)	312
PkrI	GCNGC	7 cut(s)	95, 337, 637, 640, 872, 903, 963
PleI	GAGTC	3 cut(s)	375, 580, 1069
PpsI	GAGTC	3 cut(s)	375, 580, 1069
PpuMI	RGGWCCY	1 cut(s)	1070
Psp5II	RGGWCCY	1 cut(s)	1070
Psp6I	CCWGG	2 cut(s)	294, 587
PspFI	CCCAGC	1 cut(s)	471
PspGI	CCWGG	2 cut(s)	294, 587
PspN4I	GGNNCC	3 cut(s)	602, 699, 1072
PspPI	GGNCC	1 cut(s)	1070
PspPPI	RGGWCCY	1 cut(s)	1070
PsuI	RGATCY	1 cut(s)	41
RsaI	GTAC	1 cut(s)	582
RsaNI	GTAC	1 cut(s)	581
RseI	CAYNNNNRTG	2 cut(s)	177, 878
SaqAI	TTAA	4 cut(s)	461, 483, 656, 822
SatI	GCNGC	7 cut(s)	94, 336, 636, 639, 871, 902, 962
Sau3AI	GATC	4 cut(s)	41, 381, 837, 927
Sau96I	GGNCC	1 cut(s)	1070
SchI	GAGTC	3 cut(s)	376, 581, 1070
ScrFI	CCNGG	3 cut(s)	296, 589, 1022
SetI	ASST	9 cut(s)	36, 50, 98, 582, 593, 714, 872, 909, 1072
SfaNI	GCATC	3 cut(s)	71, 112, 513
SinI	GGWCC	1 cut(s)	1070
SmiI	ATTTAAAT	1 cut(s)	657
SmiMI	CAYNNNNRTG	2 cut(s)	177, 878
SmlI	CTYRAG	2 cut(s)	23, 865
SmoI	CTYRAG	2 cut(s)	23, 865
SpeI	ACTAGT	1 cut(s)	691
Sse9I	AATT	4 cut(s)	84, 435, 479, 652
SseBI	AGGCCT	1 cut(s)	286
SsiI	CCGC	5 cut(s)	251, 338, 432, 902, 964
SspMI	CTAG	3 cut(s)	45, 128, 692
StuI	AGGCCT	1 cut(s)	286
StyD4I	CCNGG	3 cut(s)	294, 587, 1020
StyI	CCWWGG	2 cut(s)	311, 849
SwaI	ATTTAAAT	1 cut(s)	657
TaaI	ACNGT	2 cut(s)	17, 396
TaqI	TCGA	4 cut(s)	202, 543, 816, 1059
TasI	AATT	4 cut(s)	84, 435, 479, 652
TauI	GCSGC	1 cut(s)	904
TfiI	GAWTC	3 cut(s)	240, 257, 545
Tru1I	TTAA	4 cut(s)	461, 483, 656, 822
Tru9I	TTAA	4 cut(s)	461, 483, 656, 822
TscAI	CASTG	2 cut(s)	274, 399
TseFI	GTSAC	2 cut(s)	340, 573
TseI	GCWGC	6 cut(s)	93, 335, 635, 638, 870, 961
Tsp45I	GTSAC	2 cut(s)	340, 573
TspDTI	ATGAA	2 cut(s)	527, 687
TspGWI	ACGGA	2 cut(s)	189, 538
TspRI	CASTG	2 cut(s)	274, 399
Van91I	CCANNNNNTGG	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	1070
XagI	CCTNNNNNAGG	1 cut(s)	719
XapI	RAATTY	2 cut(s)	479, 652
XceI	RCATGY	1 cut(s)	1033
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	3 cut(s)	45, 128, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.