Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001973

Physical Location & Seq

Genomic Coordinates Reverse (-)

71193653 .. 71203420

Gene Structure 9768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG518400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGAGGTCCACCGCGTCCACTACGTCATCCACCGCAGCCTCTCGTATCCAAAGTGGAGCAGCTGTGGAAGGGCGCGCAATTGAGCTTCGGTGGCTTGGGGGAGCTTCGGTGGCATGGGGGAGCTGCGGTGGAAGCGTGGAGAAGAGGAGACGAGGAGTGAAGCAGAGCTGCAGAGCGAAAGCTGCGGTGGAGGAGACGAGGAGTGAAGCAAAGCTGCGGCTCACAGGTATTTATGTTTTAAGGACCTTCTATGCCATTGCTTCTGCCTCGGGGTACATAAGAGTAAAATTCAGAAGTCCAAAGTCACCAAACGGTTGTTGGACCAAGGTGGTTGGACTCCCGGGGGCCATTTCAGATGATGAAGAAGACCTCATCACCATGCTTCACAACATCTTAGGCAACAGCAAATCTGATATAAAGAGCATAAAGGTGAGGCTAGGGGCGATTAAGAAGAAGAGGAACGCTGTGTTGAACTATCTGAAGAATAATGTTGTTGATCTTCTCAAGATTGGCCTTGATATTAATGTATATGGAAGGGAACCTCATTTTTGTGCTGCTGTGGGTGGAGCTGGGAGCAGCACAGCAGGTCGAAAAGGCATGGCTGATGCTGTAGCAGATATGACAAAAAGATCAGCATACTTTCAACAAATTGAAGAAGATGTTCTGAAATATTCAAAGGCTTTAACAGATATGAGAACTACCGTGAGTTTTTTCCAAACAAAAGACATGAATGAGCTGCTAGAGTTCCACAAGAAATTAGAATCCATTCTTGAACACTTGACTGATGAGACACAGGTCTTATCAAGGTTTGAAGGATTCCCTACAAAGAAGTTAAAAACAATGAGGACAGCAGCAACACTCCACTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

31.66

Weight (kDa)

9.8

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11070 AT1G11070 AT1G11070 AT1G11070 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT4G04980 AT4G04980 AT4G04980
malus_domestica	MD05G1320300.v1.1 MD05G1320400.v1.1 MD05G1320600.v1.1 MD05G1320700.v1.1 MD05G1320900.v1.1 MD10G1299500.v1.1
prunus_persica	Prupe.4G041300_v2.0.a1 Prupe.4G041300_v2.0.a1
pyrus_communis	pycom05g29550 pycom05g29570
rosa_chinensis	RchiOBHm_Chr5g0007591 RchiOBHm_Chr5g0007601 RchiOBHm_Chr5g0021911 RchiOBHm_Chr7g0235111
rosa_laevigata	RLG00000013181 RLG00000031475
rosa_multiflora	Rmu_sc0015365.1_g000002 Rmu_sc0042291.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068760 Rroxscaffold_1G00068770 Rroxscaffold_4G00304220
rosa_rugosa	Rorug04G0429100
rosa_samantha	Rh4DG240000 Rh5AG057100 Rh5AG057200 Rh5BG054200 Rh5CG064000 Rh5CG064100 Rh5DG053300 Rh6BG518400 Rh6CG523900
rosa_wichuraiana	Rw5G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	575
AccII	CGCG	2 cut(s)	14, 75
AciI	CCGC	5 cut(s)	12, 33, 126, 185, 217
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	500
AfaI	GTAC	1 cut(s)	275
AgsI	TTSAA	6 cut(s)	472, 644, 653, 675, 773, 812
AluBI	AGCT	9 cut(s)	62, 85, 104, 123, 168, 182, 214, 569, 736
AluI	AGCT	9 cut(s)	62, 85, 104, 123, 168, 182, 214, 569, 736
Alw26I	GTCTC	3 cut(s)	142, 188, 782
Ama87I	CYCGRG	2 cut(s)	268, 340
AoxI	GGCC	2 cut(s)	345, 511
ApoI	RAATTY	1 cut(s)	287
AseI	ATTAAT	1 cut(s)	522
Asp700I	GAANNNNTTC	2 cut(s)	660, 765
AspLEI	GCGC	2 cut(s)	75, 77
AspS9I	GGNCC	4 cut(s)	6, 243, 321, 345
AsuC2I	CCSGG	2 cut(s)	341, 342
AsuHPI	GGTGA	3 cut(s)	297, 367, 442
AvaI	CYCGRG	2 cut(s)	268, 340
AvaII	GGWCC	3 cut(s)	6, 243, 321
BbsI	GAAGAC	1 cut(s)	372
BciVI	GTATCC	1 cut(s)	56
BcnI	CCSGG	2 cut(s)	341, 342
BcoDI	GTCTC	3 cut(s)	142, 188, 782
BfaI	CTAG	2 cut(s)	437, 740
BfmI	CTRYAG	2 cut(s)	169, 609
BfuAI	ACCTGC	1 cut(s)	575
BfuI	GTATCC	1 cut(s)	56
Bme1390I	CCNGG	2 cut(s)	341, 342
Bme18I	GGWCC	3 cut(s)	6, 243, 321
BmeT110I	CYCGRG	2 cut(s)	268, 340
BmgT120I	GGNCC	4 cut(s)	6, 243, 321, 345
BmiI	GGNNCC	2 cut(s)	346, 540
BmrFI	CCNGG	2 cut(s)	341, 342
BmsI	GCATC	1 cut(s)	595
BoxI	GACNNNNGTC	1 cut(s)	794
BpiI	GAAGAC	1 cut(s)	372
BpuEI	CTTGAG	1 cut(s)	488
BpuMI	CCSGG	2 cut(s)	341, 342
BsaJI	CCNNGG	4 cut(s)	267, 324, 340, 341
BsaXI	ACNNNNNCTCC	6 cut(s)	48, 78, 93, 112, 123, 142
Bse3DI	GCAATG	1 cut(s)	255
BseDI	CCNNGG	4 cut(s)	267, 324, 340, 341
BseGI	GGATG	1 cut(s)	26
BseMI	GCAATG	1 cut(s)	255
BsePI	GCGCGC	1 cut(s)	73
BseRI	GAGGAG	4 cut(s)	160, 168, 206, 214
BseYI	CCCAGC	1 cut(s)	569
Bsh1236I	CGCG	2 cut(s)	14, 75
BshFI	GGCC	2 cut(s)	347, 513
BsiHKCI	CYCGRG	2 cut(s)	268, 340
BsiSI	CCGG	1 cut(s)	341
BsmAI	GTCTC	3 cut(s)	142, 188, 782
BsmBI	CGTCTC	2 cut(s)	142, 188
BsnI	GGCC	2 cut(s)	347, 513
BsoBI	CYCGRG	2 cut(s)	268, 340
Bsp143I	GATC	2 cut(s)	496, 629
BspACI	CCGC	5 cut(s)	12, 33, 126, 185, 217
BspANI	GGCC	2 cut(s)	347, 513
BspFNI	CGCG	2 cut(s)	14, 75
BspLI	GGNNCC	2 cut(s)	346, 540
BspMAI	CTGCAG	1 cut(s)	173
BspMI	ACCTGC	1 cut(s)	575
BsrDI	GCAATG	1 cut(s)	255
BssECI	CCNNGG	4 cut(s)	267, 324, 340, 341
BssHII	GCGCGC	1 cut(s)	73
BssMI	GATC	2 cut(s)	496, 629
BssT1I	CCWWGG	1 cut(s)	324
Bst4CI	ACNGT	2 cut(s)	314, 703
Bst6I	CTCTTC	2 cut(s)	137, 449
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	394
BstF5I	GGATG	1 cut(s)	26
BstFNI	CGCG	2 cut(s)	14, 75
BstHHI	GCGC	2 cut(s)	75, 77
BstKTI	GATC	2 cut(s)	499, 632
BstMAI	GTCTC	3 cut(s)	142, 188, 782
BstMBI	GATC	2 cut(s)	496, 629
BstMWI	GCNNNNNNNGC	4 cut(s)	91, 110, 132, 182
BstPAI	GACNNNNGTC	1 cut(s)	794
BstSCI	CCNGG	2 cut(s)	339, 340
BstSFI	CTRYAG	2 cut(s)	169, 609
BstUI	CGCG	2 cut(s)	14, 75
BstV2I	GAAGAC	1 cut(s)	372
BsuI	GTATCC	1 cut(s)	56
BsuRI	GGCC	2 cut(s)	347, 513
BtsCI	GGATG	1 cut(s)	26
BveI	ACCTGC	1 cut(s)	575
Cac8I	GCNNGC	1 cut(s)	75
CfoI	GCGC	2 cut(s)	75, 77
Cfr13I	GGNCC	4 cut(s)	6, 243, 321, 345
Cfr9I	CCCGGG	1 cut(s)	340
CseI	GACGC	1 cut(s)	3
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	4 cut(s)	114, 379, 598, 727
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	1 cut(s)	394
DpnI	GATC	2 cut(s)	498, 631
DpnII	GATC	2 cut(s)	496, 629
Eam1104I	CTCTTC	2 cut(s)	137, 449
EarI	CTCTTC	2 cut(s)	137, 449
Eco130I	CCWWGG	1 cut(s)	324
Eco47I	GGWCC	3 cut(s)	6, 243, 321
Eco57I	CTGAAG	1 cut(s)	500
Eco88I	CYCGRG	2 cut(s)	268, 340
EcoO109I	RGGNCCY	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
Esp3I	CGTCTC	2 cut(s)	142, 188
FaeI	CATG	4 cut(s)	117, 382, 601, 730
FatI	CATG	4 cut(s)	113, 378, 597, 726
FokI	GGATG	1 cut(s)	13
FspBI	CTAG	2 cut(s)	437, 740
GlaI	GCGC	2 cut(s)	74, 76
GsaI	CCCAGC	1 cut(s)	573
HaeIII	GGCC	2 cut(s)	347, 513
HapII	CCGG	1 cut(s)	341
HgaI	GACGC	1 cut(s)	3
HhaI	GCGC	2 cut(s)	75, 77
Hin1II	CATG	4 cut(s)	117, 382, 601, 730
Hin6I	GCGC	2 cut(s)	73, 75
HinP1I	GCGC	2 cut(s)	73, 75
HinfI	GANTC	3 cut(s)	336, 761, 816
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	3 cut(s)	297, 367, 442
Hpy166II	GTNNAC	2 cut(s)	9, 18
Hpy188I	TCNGA	5 cut(s)	293, 355, 412, 480, 666
Hpy188III	TCNNGA	2 cut(s)	505, 770
Hpy8I	GTNNAC	2 cut(s)	9, 18
HpyAV	CCTTC	4 cut(s)	62, 256, 528, 806
HpyCH4III	ACNGT	2 cut(s)	314, 703
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	4 cut(s)	91, 110, 132, 182
HpyF3I	CTNAG	1 cut(s)	394
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	4 cut(s)	117, 382, 601, 730
HspAI	GCGC	2 cut(s)	73, 75
Kzo9I	GATC	2 cut(s)	496, 629
LmnI	GCTCC	5 cut(s)	56, 101, 120, 566, 573
LpnPI	CCDG	5 cut(s)	210, 354, 555, 570, 779
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	2 cut(s)	437, 740
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	303
MalI	GATC	2 cut(s)	498, 631
MboI	GATC	2 cut(s)	496, 629
MboII	GAAGA	9 cut(s)	154, 374, 377, 463, 466, 491, 493, 665, 668
MfeI	CAATTG	1 cut(s)	78
MluCI	AATT	4 cut(s)	78, 287, 648, 755
MlyI	GAGTC	1 cut(s)	330
MmeI	TCCRAC	2 cut(s)	299, 313
MroXI	GAANNNNTTC	2 cut(s)	660, 765
MseI	TTAA	5 cut(s)	239, 447, 522, 683, 833
MslI	CAYNNNNRTG	3 cut(s)	377, 428, 549
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	1 cut(s)	341
MspR9I	CCNGG	2 cut(s)	341, 342
MunI	CAATTG	1 cut(s)	78
MvnI	CGCG	2 cut(s)	14, 75
MwoI	GCNNNNNNNGC	4 cut(s)	91, 110, 132, 182
NciI	CCSGG	2 cut(s)	341, 342
NdeII	GATC	2 cut(s)	496, 629
NlaIII	CATG	4 cut(s)	117, 382, 601, 730
NlaIV	GGNNCC	2 cut(s)	346, 540
NmuCI	GTSAC	1 cut(s)	303
PauI	GCGCGC	1 cut(s)	73
PdmI	GAANNNNTTC	2 cut(s)	660, 765
PfeI	GAWTC	2 cut(s)	761, 816
PleI	GAGTC	1 cut(s)	330
PpsI	GAGTC	1 cut(s)	330
PpuMI	RGGWCCY	1 cut(s)	243
PshAI	GACNNNNGTC	1 cut(s)	794
PshBI	ATTAAT	1 cut(s)	522
Psp5II	RGGWCCY	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	569
PspN4I	GGNNCC	2 cut(s)	346, 540
PspPI	GGNCC	4 cut(s)	6, 243, 321, 345
PspPPI	RGGWCCY	1 cut(s)	243
PstI	CTGCAG	1 cut(s)	173
PteI	GCGCGC	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
RseI	CAYNNNNRTG	3 cut(s)	377, 428, 549
SaqAI	TTAA	5 cut(s)	239, 447, 522, 683, 833
Sau3AI	GATC	2 cut(s)	496, 629
Sau96I	GGNCC	4 cut(s)	6, 243, 321, 345
SchI	GAGTC	1 cut(s)	330
ScrFI	CCNGG	2 cut(s)	341, 342
SfaNI	GCATC	1 cut(s)	595
SfcI	CTRYAG	2 cut(s)	169, 609
SinI	GGWCC	3 cut(s)	6, 243, 321
SmaI	CCCGGG	1 cut(s)	342
SmiMI	CAYNNNNRTG	3 cut(s)	377, 428, 549
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	4 cut(s)	78, 287, 648, 755
SsiI	CCGC	5 cut(s)	12, 33, 126, 185, 217
SspI	AATATT	1 cut(s)	671
SspMI	CTAG	2 cut(s)	437, 740
StyD4I	CCNGG	2 cut(s)	339, 340
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	2 cut(s)	314, 703
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	589
TasI	AATT	4 cut(s)	78, 287, 648, 755
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	2 cut(s)	761, 816
Tru1I	TTAA	5 cut(s)	239, 447, 522, 683, 833
Tru9I	TTAA	5 cut(s)	239, 447, 522, 683, 833
TseFI	GTSAC	1 cut(s)	303
Tsp45I	GTSAC	1 cut(s)	303
TspDTI	ATGAA	2 cut(s)	375, 743
TspMI	CCCGGG	1 cut(s)	340
VpaK11BI	GGWCC	3 cut(s)	6, 243, 321
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	315
XmaI	CCCGGG	1 cut(s)	340
XmnI	GAANNNNTTC	2 cut(s)	660, 765
XspI	CTAG	2 cut(s)	437, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.