Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042291.1

Orthogroup ID

OG0001973

Physical Location & Seq

Genomic Coordinates Forward (+)

732 .. 1632

Gene Structure 901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042291.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgccggttgcaactgcatctgctccaccacccccaccacccttgctggttgcaaatggagctgctccaccacccccaccacccatggggaggcctgcaagtggagctgctccacccccacctcctgcacttggtggaagatccttacttatgaagaaatcaaatactaaattgaagagatcatcccaaatgggaagtctgtatcggactctcaaggggaaggtggaagggtcaagcttgaatggtaaatcatccaatgggagaaagggtggagcagctgggagcagcgcagcaggtggtaaaggaatggctgatgctctagcagagatgacaaagagatcagcatactttcaacaaattgaagaagatgttcacaaatattcaaaggcaataataaatatgagaactaccctgagttctttccaaacaaaagacatgaatgacctgttagagttccacaagaaagtagaatccattcttgaaaacttgactgatgagacacaggttttatcaaggtttgaaggattccctacaaaaaagttagaaacaatgagggcagcagtagcactccactcacagctaaatgcaatgatcactgaactacacaattggaaaatagaggctcccctaggtccgctccttgacaagattgaacgttatttcaccaaggtaaactcaacctcctatacaaagtatttcatttcatgtattttgatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

25.74

Weight (kDa)

9.78

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11070 AT1G11070 AT1G11070 AT1G11070 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT4G04980 AT4G04980 AT4G04980
malus_domestica	MD05G1320300.v1.1 MD05G1320400.v1.1 MD05G1320600.v1.1 MD05G1320700.v1.1 MD05G1320900.v1.1 MD10G1299500.v1.1
prunus_persica	Prupe.4G041300_v2.0.a1 Prupe.4G041300_v2.0.a1
pyrus_communis	pycom05g29550 pycom05g29570
rosa_chinensis	RchiOBHm_Chr5g0007591 RchiOBHm_Chr5g0007601 RchiOBHm_Chr5g0021911 RchiOBHm_Chr7g0235111
rosa_laevigata	RLG00000013181 RLG00000031475
rosa_multiflora	Rmu_sc0015365.1_g000002 Rmu_sc0042291.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068760 Rroxscaffold_1G00068770 Rroxscaffold_4G00304220
rosa_rugosa	Rorug04G0429100
rosa_samantha	Rh4DG240000 Rh5AG057100 Rh5AG057200 Rh5BG054200 Rh5CG064000 Rh5CG064100 Rh5DG053300 Rh6BG518400 Rh6CG523900
rosa_wichuraiana	Rw5G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	284
Acc36I	ACCTGC	1 cut(s)	284
AccBSI	CCGCTC	1 cut(s)	637
AciI	CCGC	1 cut(s)	635
AclI	AACGTT	1 cut(s)	655
AclWI	GGATC	1 cut(s)	135
AdeI	CACNNNGTG	1 cut(s)	134
AfiI	CCNNNNNNNGG	4 cut(s)	86, 90, 101, 131
AgsI	TTSAA	8 cut(s)	175, 241, 353, 362, 384, 482, 521, 653
AluBI	AGCT	5 cut(s)	62, 107, 237, 278, 580
AluI	AGCT	5 cut(s)	62, 107, 237, 278, 580
Alw26I	GTCTC	1 cut(s)	491
AlwI	GGATC	1 cut(s)	135
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	6 cut(s)	62, 107, 275, 285, 290, 557
ArsI	GACNNNNNNTTYG	2 cut(s)	181, 213
Asp700I	GAANNNNTTC	2 cut(s)	369, 474
AspA2I	CCTAGG	1 cut(s)	628
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	632
AsuHPI	GGTGA	1 cut(s)	655
AvaII	GGWCC	1 cut(s)	632
AvrII	CCTAGG	1 cut(s)	628
BbvI	GCAGC	6 cut(s)	49, 94, 287, 297, 302, 569
BclI	TGATCA	1 cut(s)	591
BcoDI	GTCTC	1 cut(s)	491
BfaI	CTAG	2 cut(s)	320, 629
BfuAI	ACCTGC	1 cut(s)	284
BisI	GCNGC	6 cut(s)	63, 108, 276, 286, 291, 558
BlnI	CCTAGG	1 cut(s)	628
BlsI	GCNGC	6 cut(s)	64, 109, 277, 287, 292, 559
Bme18I	GGWCC	1 cut(s)	632
BmgT120I	GGNCC	1 cut(s)	632
BmiI	GGNNCC	1 cut(s)	624
BmsI	GCATC	2 cut(s)	26, 304
BpuEI	CTTGAG	1 cut(s)	197
BsaJI	CCNNGG	3 cut(s)	84, 628, 666
BsaXI	ACNNNNNCTCC	4 cut(s)	253, 283, 665, 695
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 90, 101, 131
Bse118I	RCCGGY	1 cut(s)	4
Bse3DI	GCAATG	1 cut(s)	594
BseDI	CCNNGG	3 cut(s)	84, 628, 666
BseGI	GGATG	2 cut(s)	182, 251
BseLI	CCNNNNNNNGG	4 cut(s)	86, 90, 101, 131
BseMI	GCAATG	1 cut(s)	594
BseMII	CTCAG	1 cut(s)	404
BseXI	GCAGC	6 cut(s)	49, 94, 287, 297, 302, 569
BseYI	CCCAGC	1 cut(s)	278
BsgI	GTGCAG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	5
BslI	CCNNNNNNNGG	4 cut(s)	86, 90, 101, 131
BsmAI	GTCTC	1 cut(s)	491
BsnI	GGCC	1 cut(s)	94
Bsp143I	GATC	4 cut(s)	140, 179, 338, 591
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	1 cut(s)	635
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	1 cut(s)	405
BspLI	GGNNCC	1 cut(s)	624
BspMI	ACCTGC	1 cut(s)	284
BspPI	GGATC	1 cut(s)	135
BsrBI	CCGCTC	1 cut(s)	637
BsrDI	GCAATG	1 cut(s)	594
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	3 cut(s)	84, 628, 666
BssMI	GATC	4 cut(s)	140, 179, 338, 591
BssT1I	CCWWGG	3 cut(s)	84, 628, 666
Bst6I	CTCTTC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	413
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	2 cut(s)	182, 251
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	4 cut(s)	143, 182, 341, 594
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	4 cut(s)	140, 179, 338, 591
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 104, 563
BstV1I	GCAGC	6 cut(s)	49, 94, 287, 297, 302, 569
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	94
BtgI	CCRYGG	1 cut(s)	84
BtsCI	GGATG	2 cut(s)	182, 251
BtsIMutI	CAGTG	1 cut(s)	594
BveI	ACCTGC	1 cut(s)	284
Cac8I	GCNNGC	1 cut(s)	96
CfoI	GCGC	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	632
CspCI	CAANNNNNGTGG	2 cut(s)	24, 59
CviAII	CATG	3 cut(s)	85, 436, 705
CviJI	RGCY	8 cut(s)	62, 94, 107, 237, 278, 311, 580, 623
CviKI_1	RGCY	8 cut(s)	62, 94, 107, 237, 278, 311, 580, 623
DdeI	CTNAG	1 cut(s)	413
DpnI	GATC	4 cut(s)	142, 181, 340, 593
DpnII	GATC	4 cut(s)	140, 179, 338, 591
DraIII	CACNNNGTG	1 cut(s)	134
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Eco130I	CCWWGG	3 cut(s)	84, 628, 666
Eco147I	AGGCCT	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	632
EcoT14I	CCWWGG	3 cut(s)	84, 628, 666
ErhI	CCWWGG	3 cut(s)	84, 628, 666
FaeI	CATG	3 cut(s)	88, 439, 708
FaiI	YATR	7 cut(s)	86, 152, 346, 401, 437, 687, 706
FatI	CATG	3 cut(s)	84, 435, 704
FbaI	TGATCA	1 cut(s)	591
Fnu4HI	GCNGC	6 cut(s)	63, 108, 276, 286, 291, 558
FokI	GGATG	2 cut(s)	169, 238
Fsp4HI	GCNGC	6 cut(s)	63, 108, 276, 286, 291, 558
FspBI	CTAG	2 cut(s)	320, 629
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	6 cut(s)	63, 108, 276, 286, 291, 558
GsaI	CCCAGC	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	1 cut(s)	5
HhaI	GCGC	1 cut(s)	290
Hin1II	CATG	3 cut(s)	88, 439, 708
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HindIII	AAGCTT	1 cut(s)	235
HinfI	GANTC	3 cut(s)	208, 470, 525
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	1 cut(s)	655
Hpy166II	GTNNAC	2 cut(s)	373, 673
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	1 cut(s)	479
Hpy8I	GTNNAC	2 cut(s)	373, 673
HpyAV	CCTTC	3 cut(s)	214, 221, 515
HpyCH4IV	ACGT	1 cut(s)	655
HpyCH4V	TGCA	6 cut(s)	11, 17, 53, 98, 128, 587
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 104, 563
HpyF3I	CTNAG	1 cut(s)	413
HpySE526I	ACGT	1 cut(s)	655
Hsp92II	CATG	3 cut(s)	88, 439, 708
HspAI	GCGC	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	591
Kzo9I	GATC	4 cut(s)	140, 179, 338, 591
LmnI	GCTCC	9 cut(s)	28, 59, 70, 104, 115, 272, 282, 628, 642
LpnPI	CCDG	9 cut(s)	18, 32, 108, 138, 264, 279, 425, 458, 488
Lsp1109I	GCAGC	6 cut(s)	49, 94, 287, 297, 302, 569
LweI	GCATC	2 cut(s)	26, 304
MaeI	CTAG	2 cut(s)	320, 629
MaeII	ACGT	1 cut(s)	655
MalI	GATC	4 cut(s)	142, 181, 340, 593
MbiI	CCGCTC	1 cut(s)	637
MboI	GATC	4 cut(s)	140, 179, 338, 591
MboII	GAAGA	5 cut(s)	150, 166, 187, 374, 377
MfeI	CAATTG	1 cut(s)	607
MflI	RGATCY	1 cut(s)	140
MluCI	AATT	3 cut(s)	170, 357, 607
MlyI	GAGTC	1 cut(s)	202
MnlI	CCTC	5 cut(s)	84, 132, 546, 613, 691
MroXI	GAANNNNTTC	2 cut(s)	369, 474
MseI	TTAA	1 cut(s)	718
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	1 cut(s)	5
MunI	CAATTG	1 cut(s)	607
MwoI	GCNNNNNNNGC	3 cut(s)	59, 104, 563
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	4 cut(s)	140, 179, 338, 591
NlaIII	CATG	3 cut(s)	88, 439, 708
NlaIV	GGNNCC	1 cut(s)	624
PaqCI	CACCTGC	1 cut(s)	284
PceI	AGGCCT	1 cut(s)	94
PdmI	GAANNNNTTC	2 cut(s)	369, 474
PfeI	GAWTC	2 cut(s)	470, 525
PkrI	GCNGC	6 cut(s)	64, 109, 277, 287, 292, 559
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp1406I	AACGTT	1 cut(s)	655
PspFI	CCCAGC	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	624
PspPI	GGNCC	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	718
SatI	GCNGC	6 cut(s)	63, 108, 276, 286, 291, 558
Sau3AI	GATC	4 cut(s)	140, 179, 338, 591
Sau96I	GGNCC	1 cut(s)	632
SchI	GAGTC	1 cut(s)	202
SfaNI	GCATC	2 cut(s)	26, 304
SinI	GGWCC	1 cut(s)	632
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	3 cut(s)	170, 357, 607
SseBI	AGGCCT	1 cut(s)	94
SsiI	CCGC	1 cut(s)	635
SspI	AATATT	1 cut(s)	380
SspMI	CTAG	2 cut(s)	320, 629
StuI	AGGCCT	1 cut(s)	94
StyI	CCWWGG	3 cut(s)	84, 628, 666
TaiI	ACGT	1 cut(s)	658
TasI	AATT	3 cut(s)	170, 357, 607
TfiI	GAWTC	2 cut(s)	470, 525
Tru1I	TTAA	1 cut(s)	718
Tru9I	TTAA	1 cut(s)	718
TscAI	CASTG	1 cut(s)	601
TseI	GCWGC	6 cut(s)	62, 107, 275, 285, 290, 557
TspDTI	ATGAA	4 cut(s)	167, 452, 688, 693
TspRI	CASTG	1 cut(s)	601
VpaK11BI	GGWCC	1 cut(s)	632
XmaJI	CCTAGG	1 cut(s)	628
XmnI	GAANNNNTTC	2 cut(s)	369, 474
XspI	CTAG	2 cut(s)	320, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.