Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001973

Physical Location & Seq

Genomic Coordinates Forward (+)

4573610 .. 4578104

Gene Structure 4495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG053300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2622 bp

ATGACCATGAGCTGCTTTGGTCCATTGTTTCGTTGGAAGCCTCCTTCTCGACGCAAGGGAACGAAAGGCTCTAACCGGCCCAAGAGTCTTCCCTCGAAACAGAATGTCACCAGAAGCACACCAGCAGACGACTCTTATGGAGTTGCAGGAAATTCTGCTCTGACGATGGCGCTTAGGAAGAAGATCGTGACCTTCAGGGATGTCATGGACCTGCCAACATGTAATGCTTCTTCACCCATAAATCAGCTGGTGATGGGGTTGATGCTTGATCTCCAAAAGCTCTACCCTGAAATTGTACGTCGTAGTCAATTATCAGAAATGAAGGGAGCATCTACAGAAAAGATCCTGGCCTCCTTCTGCAATGCACTGAAATCTATTGGAGATTCATGGATGACAAACCATGACAGGTTGGACAAACTGAGATATGATATGCCATCATTCAAAGAGAATGCCAATTGGGACCAACACGTTGGAACCGTGTTGGCAACACTTGAGTGCTTGATTAAGATGGCAAGGGATAAGTTTGATATGATGGACGAGGATGAGCAGAAGAGCAACTGCAGCCCTCGCGGTAACTCATTTGGGAGATTCTTAGGCGACACCGATTCAGAGAGTTACACCTCTAGCTGCCCTTCTCCAATCACACCATCCTCTGTCCTTCCTGAGGTGATAGATAGTGGTTCCCCCAAATCTCAAAGGAGATCGAAAGCTTCTTCCAGATCACCCGTTCTCTTGACTTTAAGAGTGCAGGCAGTGGGGAAACTCAACCCAATTGATGTTAAGCATTTGTCTCTTCACTTATCAAATGAAGGAGCCTCTGATAAAAGTAACAAATTGGTTGATGAACCATCAAGAGAGACAGTGGAAAGCAGCTCCGAGAAGTCATCAGAGGAAGAAAACAGATGTAGCAGCACAAGAGAGGACACAGCAGAGGTCCCAAATCCAAGTTTGAATGAGAATGATAGCAGAACTGTTATAATAGACAACAGAAACTGTGATGAAGTTGGCATTTCAACCACAGCCCCTGAAACTTTGGCAGTAGATATAACAGAATTGCCTCCACCCTCACCACCACCAAATCTCACAACAACAATACCTGTAACTCAACCACCACCACCATCACTACCCACACTGCAGCCAAAGGCTGCTGCGGCACCTCCCTCACCGCCACCACCACCAACACTGCCTGTATCACCATCACTGCCCACGTTGCAGCCAACTGTTGCAGCACTACCACCCCCGCCACCACCAACATTAGCACCACTAAATGCAGCACCTGCTAGGCGGCCAGCACCACCTCCACCTAAGGCACTGCGATCAACAAAAGCTGCTCCACCACCATCACTACCCACATTGCAGCCAAAGGCTGCTGCGACACCCCCCTCACCACCACTACCACCAACACTGCCTGTACCGCCATCACTGCCCACGTTGCAGCCAACTGTTGCAGCACCGCCACCCCCACCGCCGCTGCCACCACCAACATTAACACCACTATATGCAGCACCTGCTAGGCAGTCACTGCCACCTCCACCTAAGGTACTGGGATCAACAAAAGCTGCTCCACCACCGCCACCACCTCTGCCCATGGCACCAGGATCAACAGCATTAGGTCCACCAACCCCACTACCGATGCCGGTTGCAACTGCATCTGCTCCACCACCCCCACCACCCATGGGGAGGCCTGCAAATGGAGCTGCTCCACCCCCACCTCCTGCACTTGGTGGAAGATCCTTACTTATGAAGAAATCAAATACTAAATTGAAGAGATCATCCCAAATGGGAAGTCTGTATCGGACTCTCAAGGGGAAGGTGGAAGGGTCAAGCTTGAATGGTAAATCATCCAATGGGAGAAAGGGTGGAGCAGCTGGGAGCAGCACAGCAGGTGGTAAAGGAATGGCTGATGCTCTAGCAGAGATGACAAAGAGATCAGCATACTTTCAACAAATTGAAGAAGATGTTCAGAAATATTCAAAGGCTATAATAAATATGAGAACTACCCTGAGTTCTTTCCAAACAAAAGACATGAATGAGCTGTTAGAGTTCCACAAGAAAGTAGAATCCATTCTTGAAAACTTGACTGATGAGACACAGGTTTTATCAAGGTTTGATGGATTCCCTACAAAAAAGTTAGAAACAATGAGGGCAGCAGTAGCACTCCACTCACAGCTAAATGCAATGATCACTGAACTACACAATTGGAAAATAGAGGCTCCCCTAGGTCCGCTCCTTGACAAGATTGAACGTTATTTCACCAAGATCAAAGGAGAAATAGATAAACTGGAGCGAACAAAAGATGAAGAAATTAAGAAATTTAAGAGTCAAAATATCCACTTTGATTTCAATATCCTCATCCGGATAAAAGAAGCAATGGTGGATGTTTCCTCAGGCTGCATGGAGCTGGCACTAAAGGAAAGAAGAGAAGCAAAGGCCAGTGGAGAGGCACAAACTACTGGAACCAAAACTGATAAAAAGCAATTAAAGATATGCATTAAAATGCTGTGGAGGGCTTTTCAGTTTGCCTTCAAGGTCTATACCTTTGCTGGTGGACACGATGATCGTGCCGACATGCTCACAAGAGAACTAGCTACTGAAATTGAGTCTGACCCCTACCAGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231

Pfam Domains

Protein Families

No domains found.

Protein Analysis

873

Amino Acids

94.35

Weight (kDa)

9.29

Isoelectric Point (pI)

67.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11070 AT1G11070 AT1G11070 AT1G11070 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT4G04980 AT4G04980 AT4G04980
malus_domestica	MD05G1320300.v1.1 MD05G1320400.v1.1 MD05G1320600.v1.1 MD05G1320700.v1.1 MD05G1320900.v1.1 MD10G1299500.v1.1
prunus_persica	Prupe.4G041300_v2.0.a1 Prupe.4G041300_v2.0.a1
pyrus_communis	pycom05g29550 pycom05g29570
rosa_chinensis	RchiOBHm_Chr5g0007591 RchiOBHm_Chr5g0007601 RchiOBHm_Chr5g0021911 RchiOBHm_Chr7g0235111
rosa_laevigata	RLG00000013181 RLG00000031475
rosa_multiflora	Rmu_sc0015365.1_g000002 Rmu_sc0042291.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068760 Rroxscaffold_1G00068770 Rroxscaffold_4G00304220
rosa_rugosa	Rorug04G0429100
rosa_samantha	Rh4DG240000 Rh5AG057100 Rh5AG057200 Rh5BG054200 Rh5CG064000 Rh5CG064100 Rh5DG053300 Rh6BG518400 Rh6CG523900
rosa_wichuraiana	Rw5G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	977
AarI	CACCTGC	3 cut(s)	1285, 1516, 1874
Acc36I	ACCTGC	4 cut(s)	219, 1285, 1516, 1874
AccB1I	GGYRCC	2 cut(s)	1153, 1591
AccBSI	CCGCTC	1 cut(s)	2227
AccII	CGCG	1 cut(s)	570
AccIII	TCCGGA	1 cut(s)	2355
AclI	AACGTT	1 cut(s)	2245
AclWI	GGATC	4 cut(s)	337, 1555, 1606, 1725
AcoI	YGGCCR	1 cut(s)	1286
AcsI	RAATTY	2 cut(s)	151, 2312
AcuI	CTGAAG	1 cut(s)	178
AdeI	CACNNNGTG	1 cut(s)	1724
AfaI	GTAC	3 cut(s)	297, 1413, 1542
AfiI	CCNNNNNNNGG	5 cut(s)	664, 1676, 1680, 1691, 1721
AflIII	ACRYGT	2 cut(s)	218, 466
AjnI	CCWGG	2 cut(s)	345, 1594
AleI	CACNNNNGTG	1 cut(s)	493
Alw26I	GTCTC	3 cut(s)	795, 851, 2081
AlwI	GGATC	4 cut(s)	337, 1555, 1606, 1725
AlwNI	CAGNNNCTG	5 cut(s)	993, 1025, 1277, 1508, 1522
Aor13HI	TCCGGA	1 cut(s)	2355
AoxI	GGCC	5 cut(s)	77, 348, 1286, 1682, 2430
ApoI	RAATTY	2 cut(s)	151, 2312
ArsI	GACNNNNNNTTYG	2 cut(s)	1771, 1803
Asp700I	GAANNNNTTC	2 cut(s)	1959, 2064
AspA2I	CCTAGG	1 cut(s)	2218
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	7 cut(s)	20, 78, 208, 460, 934, 1613, 2222
AvaII	GGWCC	6 cut(s)	20, 208, 460, 934, 1613, 2222
AvrII	CCTAGG	1 cut(s)	2218
AxyI	CCTNAGG	4 cut(s)	663, 1305, 1536, 2386
BanI	GGYRCC	2 cut(s)	1153, 1591
BarI	GAAGNNNNNNTAC	2 cut(s)	214, 246
BbsI	GAAGAC	1 cut(s)	80
BcgI	CGANNNNNNTGC	2 cut(s)	2543, 2577
BciT130I	CCWGG	2 cut(s)	347, 1596
BclI	TGATCA	1 cut(s)	2181
BcoDI	GTCTC	3 cut(s)	795, 851, 2081
BfaI	CTAG	6 cut(s)	624, 1281, 1512, 1910, 2219, 2585
BfmI	CTRYAG	3 cut(s)	333, 559, 1133
BfoI	RGCGCY	1 cut(s)	173
BfuAI	ACCTGC	4 cut(s)	219, 1285, 1516, 1874
BlnI	CCTAGG	1 cut(s)	2218
Bme1390I	CCNGG	2 cut(s)	347, 1596
Bme18I	GGWCC	6 cut(s)	20, 208, 460, 934, 1613, 2222
BmgT120I	GGNCC	7 cut(s)	20, 78, 208, 460, 934, 1613, 2222
BmiI	GGNNCC	9 cut(s)	461, 475, 682, 814, 936, 1155, 1593, 2214, 2458
BmrFI	CCNGG	2 cut(s)	347, 1596
BmrI	ACTGGG	1 cut(s)	1553
BmsI	GCATC	5 cut(s)	252, 338, 1623, 1658, 1894
BmuI	ACTGGG	1 cut(s)	1553
BpiI	GAAGAC	1 cut(s)	80
BpmI	CTGGAG	1 cut(s)	2303
Bpu10I	CCTNAGC	1 cut(s)	173
BpuEI	CTTGAG	2 cut(s)	512, 1787
BsaJI	CCNNGG	3 cut(s)	1587, 1674, 2218
BsaWI	WCCGGW	1 cut(s)	2355
BsaXI	ACNNNNNCTCC	2 cut(s)	1843, 1873
Bsc4I	CCNNNNNNNGG	5 cut(s)	664, 1676, 1680, 1691, 1721
Bse118I	RCCGGY	2 cut(s)	75, 1636
Bse1I	ACTGG	4 cut(s)	1548, 2286, 2433, 2458
Bse21I	CCTNAGG	4 cut(s)	663, 1305, 1536, 2386
Bse3DI	GCAATG	4 cut(s)	367, 1352, 2184, 2376
BseAI	TCCGGA	1 cut(s)	2355
BseBI	CCWGG	2 cut(s)	347, 1596
BseDI	CCNNGG	3 cut(s)	1587, 1674, 2218
BseGI	GGATG	8 cut(s)	205, 396, 547, 647, 1772, 1841, 2352, 2383
BseLI	CCNNNNNNNGG	5 cut(s)	664, 1676, 1680, 1691, 1721
BseMI	GCAATG	4 cut(s)	367, 1352, 2184, 2376
BseMII	CTCAG	4 cut(s)	410, 654, 1994, 2400
BseNI	ACTGG	4 cut(s)	1548, 2286, 2433, 2458
BseYI	CCCAGC	1 cut(s)	1868
BsgI	GTGCAG	2 cut(s)	767, 1701
Bsh1236I	CGCG	1 cut(s)	570
BshFI	GGCC	5 cut(s)	79, 350, 1288, 1684, 2432
BshNI	GGYRCC	2 cut(s)	1153, 1591
BsiSI	CCGG	3 cut(s)	76, 1637, 2356
BslFI	GGGAC	2 cut(s)	473, 920
BslI	CCNNNNNNNGG	5 cut(s)	664, 1676, 1680, 1691, 1721
BsmAI	GTCTC	3 cut(s)	795, 851, 2081
BsmFI	GGGAC	2 cut(s)	473, 920
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	5 cut(s)	79, 350, 1288, 1684, 2432
Bsp13I	TCCGGA	1 cut(s)	2355
Bsp19I	CCATGG	2 cut(s)	1587, 1674
BspANI	GGCC	5 cut(s)	79, 350, 1288, 1684, 2432
BspCNI	CTCAG	4 cut(s)	411, 655, 1995, 2399
BspEI	TCCGGA	1 cut(s)	2355
BspFNI	CGCG	1 cut(s)	570
BspLI	GGNNCC	9 cut(s)	461, 475, 682, 814, 936, 1155, 1593, 2214, 2458
BspMAI	CTGCAG	2 cut(s)	563, 1137
BspMI	ACCTGC	4 cut(s)	219, 1285, 1516, 1874
BspPI	GGATC	4 cut(s)	337, 1555, 1606, 1725
BspQI	GCTCTTC	1 cut(s)	545
BspT107I	GGYRCC	2 cut(s)	1153, 1591
BsrBI	CCGCTC	1 cut(s)	2227
BsrDI	GCAATG	4 cut(s)	367, 1352, 2184, 2376
BsrFI	RCCGGY	2 cut(s)	75, 1636
BsrI	ACTGG	4 cut(s)	1548, 2286, 2433, 2458
BssAI	RCCGGY	2 cut(s)	75, 1636
BssECI	CCNNGG	3 cut(s)	1587, 1674, 2218
BssT1I	CCWWGG	3 cut(s)	1587, 1674, 2218
Bst2UI	CCWGG	2 cut(s)	347, 1596
Bst4CI	ACNGT	6 cut(s)	478, 862, 973, 995, 1222, 1444
Bst6I	CTCTTC	4 cut(s)	545, 798, 1760, 2413
BstAPI	GCANNNNNTGC	3 cut(s)	1277, 1508, 1522
BstC8I	GCNNGC	4 cut(s)	750, 1290, 1686, 2403
BstDEI	CTNAG	8 cut(s)	173, 419, 592, 663, 1305, 1536, 2003, 2386
BstDSI	CCRYGG	2 cut(s)	1587, 1674
BstENI	CCTNNNNNAGG	1 cut(s)	662
BstF5I	GGATG	8 cut(s)	205, 396, 547, 647, 1772, 1841, 2352, 2383
BstFNI	CGCG	1 cut(s)	570
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	172
BstMAI	GTCTC	3 cut(s)	795, 851, 2081
BstNI	CCWGG	2 cut(s)	347, 1596
BstNSI	RCATGY	2 cut(s)	222, 2572
BstSCI	CCNGG	2 cut(s)	345, 1594
BstSFI	CTRYAG	3 cut(s)	333, 559, 1133
BstUI	CGCG	1 cut(s)	570
BstV2I	GAAGAC	1 cut(s)	80
BstX2I	RGATCY	2 cut(s)	342, 1730
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	2 cut(s)	342, 1730
Bsu36I	CCTNAGG	4 cut(s)	663, 1305, 1536, 2386
BsuRI	GGCC	5 cut(s)	79, 350, 1288, 1684, 2432
BtgI	CCRYGG	2 cut(s)	1587, 1674
BtsCI	GGATG	8 cut(s)	205, 396, 547, 647, 1772, 1841, 2352, 2383
BtsI	GCAGTG	8 cut(s)	759, 1130, 1181, 1199, 1310, 1403, 1421, 1520
BveI	ACCTGC	4 cut(s)	219, 1285, 1516, 1874
Cac8I	GCNNGC	4 cut(s)	750, 1290, 1686, 2403
CaiI	CAGNNNCTG	5 cut(s)	993, 1025, 1277, 1508, 1522
CfoI	GCGC	1 cut(s)	172
Cfr10I	RCCGGY	2 cut(s)	75, 1636
Cfr13I	GGNCC	7 cut(s)	20, 78, 208, 460, 934, 1613, 2222
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	3 cut(s)	296, 1412, 1541
CviQI	GTAC	3 cut(s)	296, 1412, 1541
DdeI	CTNAG	8 cut(s)	173, 419, 592, 663, 1305, 1536, 2003, 2386
DraIII	CACNNNGTG	1 cut(s)	1724
EaeI	YGGCCR	1 cut(s)	1286
Eam1104I	CTCTTC	4 cut(s)	545, 798, 1760, 2413
EarI	CTCTTC	4 cut(s)	545, 798, 1760, 2413
Eco130I	CCWWGG	3 cut(s)	1587, 1674, 2218
Eco147I	AGGCCT	1 cut(s)	1684
Eco47I	GGWCC	6 cut(s)	20, 208, 460, 934, 1613, 2222
Eco57I	CTGAAG	1 cut(s)	178
Eco81I	CCTNAGG	4 cut(s)	663, 1305, 1536, 2386
EcoNI	CCTNNNNNAGG	1 cut(s)	662
EcoO109I	RGGNCCY	1 cut(s)	934
EcoRII	CCWGG	2 cut(s)	345, 1594
EcoT14I	CCWWGG	3 cut(s)	1587, 1674, 2218
EcoT22I	ATGCAT	1 cut(s)	2492
ErhI	CCWWGG	3 cut(s)	1587, 1674, 2218
FaqI	GGGAC	2 cut(s)	473, 920
FauI	CCCGC	1 cut(s)	1248
FbaI	TGATCA	1 cut(s)	2181
FokI	GGATG	8 cut(s)	212, 403, 554, 634, 1759, 1828, 2339, 2390
FspBI	CTAG	6 cut(s)	624, 1281, 1512, 1910, 2219, 2585
GlaI	GCGC	1 cut(s)	171
GsaI	CCCAGC	1 cut(s)	1872
GsuI	CTGGAG	1 cut(s)	2303
HaeII	RGCGCY	1 cut(s)	173
HaeIII	GGCC	5 cut(s)	79, 350, 1288, 1684, 2432
HapII	CCGG	3 cut(s)	76, 1637, 2356
HgaI	GACGC	1 cut(s)	60
HhaI	GCGC	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HindIII	AAGCTT	2 cut(s)	708, 1825
HpaII	CCGG	3 cut(s)	76, 1637, 2356
Hpy166II	GTNNAC	2 cut(s)	1616, 2549
Hpy188I	TCNGA	9 cut(s)	162, 316, 610, 820, 877, 889, 1797, 1965, 2605
Hpy188III	TCNNGA	8 cut(s)	48, 187, 662, 717, 733, 852, 2069, 2356
Hpy8I	GTNNAC	2 cut(s)	1616, 2549
Hpy99I	CGWCG	2 cut(s)	54, 303
HpyCH4III	ACNGT	6 cut(s)	478, 862, 973, 995, 1222, 1444
HpyCH4IV	ACGT	5 cut(s)	298, 468, 1208, 1430, 2245
HpyF3I	CTNAG	8 cut(s)	173, 419, 592, 663, 1305, 1536, 2003, 2386
HpySE526I	ACGT	5 cut(s)	298, 468, 1208, 1430, 2245
HspAI	GCGC	1 cut(s)	170
Kpn2I	TCCGGA	1 cut(s)	2355
Ksp22I	TGATCA	1 cut(s)	2181
LguI	GCTCTTC	1 cut(s)	545
LweI	GCATC	5 cut(s)	252, 338, 1623, 1658, 1894
MaeI	CTAG	6 cut(s)	624, 1281, 1512, 1910, 2219, 2585
MaeII	ACGT	5 cut(s)	298, 468, 1208, 1430, 2245
MaeIII	GTNAC	7 cut(s)	106, 187, 572, 614, 827, 1099, 1518
MbiI	CCGCTC	1 cut(s)	2227
MfeI	CAATTG	3 cut(s)	454, 771, 2197
MflI	RGATCY	2 cut(s)	342, 1730
MlyI	GAGTC	5 cut(s)	94, 125, 1792, 2329, 2609
MmeI	TCCRAC	3 cut(s)	14, 390, 451
Mph1103I	ATGCAT	1 cut(s)	2492
MroI	TCCGGA	1 cut(s)	2355
MroXI	GAANNNNTTC	2 cut(s)	1959, 2064
MseI	TTAA	8 cut(s)	504, 740, 780, 1487, 2307, 2316, 2480, 2493
MslI	CAYNNNNRTG	2 cut(s)	493, 2495
MspA1I	CMGCKG	3 cut(s)	247, 1471, 1868
MspI	CCGG	3 cut(s)	76, 1637, 2356
MspR9I	CCNGG	2 cut(s)	347, 1596
MunI	CAATTG	3 cut(s)	454, 771, 2197
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	2 cut(s)	347, 1596
MvnI	CGCG	1 cut(s)	570
NcoI	CCATGG	2 cut(s)	1587, 1674
NlaIV	GGNNCC	9 cut(s)	461, 475, 682, 814, 936, 1155, 1593, 2214, 2458
NmuCI	GTSAC	3 cut(s)	106, 187, 1518
NsiI	ATGCAT	1 cut(s)	2492
NspI	RCATGY	2 cut(s)	222, 2572
OliI	CACNNNNGTG	1 cut(s)	493
PaqCI	CACCTGC	3 cut(s)	1285, 1516, 1874
PceI	AGGCCT	1 cut(s)	1684
PciI	ACATGT	1 cut(s)	218
PciSI	GCTCTTC	1 cut(s)	545
PcsI	WCGNNNNNNNCGW	1 cut(s)	474
PctI	GAATGC	1 cut(s)	454
PdmI	GAANNNNTTC	2 cut(s)	1959, 2064
PfeI	GAWTC	5 cut(s)	383, 588, 605, 2060, 2115
PleI	GAGTC	5 cut(s)	93, 125, 1792, 2328, 2608
PpsI	GAGTC	5 cut(s)	93, 125, 1792, 2328, 2608
PpuMI	RGGWCCY	1 cut(s)	934
PscI	ACATGT	1 cut(s)	218
PsiI	TTATAA	1 cut(s)	977
Psp1406I	AACGTT	1 cut(s)	2245
Psp5II	RGGWCCY	1 cut(s)	934
Psp6I	CCWGG	2 cut(s)	345, 1594
PspFI	CCCAGC	1 cut(s)	1868
PspGI	CCWGG	2 cut(s)	345, 1594
PspN4I	GGNNCC	9 cut(s)	461, 475, 682, 814, 936, 1155, 1593, 2214, 2458
PspPI	GGNCC	7 cut(s)	20, 78, 208, 460, 934, 1613, 2222
PspPPI	RGGWCCY	1 cut(s)	934
PstI	CTGCAG	2 cut(s)	563, 1137
PstNI	CAGNNNCTG	5 cut(s)	993, 1025, 1277, 1508, 1522
PsuI	RGATCY	2 cut(s)	342, 1730
PvuII	CAGCTG	2 cut(s)	247, 1868
RsaI	GTAC	3 cut(s)	297, 1413, 1542
RsaNI	GTAC	3 cut(s)	296, 1412, 1541
RseI	CAYNNNNRTG	2 cut(s)	493, 2495
SapI	GCTCTTC	1 cut(s)	545
SaqAI	TTAA	8 cut(s)	504, 740, 780, 1487, 2307, 2316, 2480, 2493
Sau96I	GGNCC	7 cut(s)	20, 78, 208, 460, 934, 1613, 2222
SchI	GAGTC	5 cut(s)	94, 125, 1792, 2329, 2609
ScrFI	CCNGG	2 cut(s)	347, 1596
SfaNI	GCATC	5 cut(s)	252, 338, 1623, 1658, 1894
SfcI	CTRYAG	3 cut(s)	333, 559, 1133
SinI	GGWCC	6 cut(s)	20, 208, 460, 934, 1613, 2222
SmiMI	CAYNNNNRTG	2 cut(s)	493, 2495
SmlI	CTYRAG	2 cut(s)	491, 1802
SmoI	CTYRAG	2 cut(s)	491, 1802
SseBI	AGGCCT	1 cut(s)	1684
SspI	AATATT	1 cut(s)	1970
SspMI	CTAG	6 cut(s)	624, 1281, 1512, 1910, 2219, 2585
StuI	AGGCCT	1 cut(s)	1684
StyD4I	CCNGG	2 cut(s)	345, 1594
StyI	CCWWGG	3 cut(s)	1587, 1674, 2218
TaaI	ACNGT	6 cut(s)	478, 862, 973, 995, 1222, 1444
TaiI	ACGT	5 cut(s)	301, 471, 1211, 1433, 2248
TaqI	TCGA	3 cut(s)	49, 95, 704
TauI	GCSGC	3 cut(s)	1154, 1288, 1471
TfiI	GAWTC	5 cut(s)	383, 588, 605, 2060, 2115
Tru1I	TTAA	8 cut(s)	504, 740, 780, 1487, 2307, 2316, 2480, 2493
Tru9I	TTAA	8 cut(s)	504, 740, 780, 1487, 2307, 2316, 2480, 2493
TseFI	GTSAC	3 cut(s)	106, 187, 1518
Tsp45I	GTSAC	3 cut(s)	106, 187, 1518
TspDTI	ATGAA	8 cut(s)	335, 375, 822, 858, 1014, 1757, 2042, 2313
VpaK11BI	GGWCC	6 cut(s)	20, 208, 460, 934, 1613, 2222
XagI	CCTNNNNNAGG	1 cut(s)	662
XapI	RAATTY	2 cut(s)	151, 2312
XceI	RCATGY	2 cut(s)	222, 2572
XcmI	CCANNNNNNNNNTGG	2 cut(s)	30, 244
XmaJI	CCTAGG	1 cut(s)	2218
XmnI	GAANNNNTTC	2 cut(s)	1959, 2064
XspI	CTAG	6 cut(s)	624, 1281, 1512, 1910, 2219, 2585
Zsp2I	ATGCAT	1 cut(s)	2492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.