Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001973

Physical Location & Seq

Genomic Coordinates Reverse (-)

44782299 .. 44783810

Gene Structure 1512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1320600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGGTAGTCTCTACCGCCTTCTCAAGAGAAAGGTGGAAGGATCTAGCTTGGATGGCAAGGCATCCAATGGGAGAAAGGGTGGAATTGGAAGCAGCTCTGGTGGAAAACAAGGAATGGCTGATGCTCTAGCAGAGATTACAAAGAGATCAGCATACTTTCAACAAATTGAAGAAGATGTTCAGAAGTATGCGAAGCCTATCATGGAAATGAGAACCACCCTTGGTTCTTTCAAAACAAAAGACATGAATGAGTTGATGCAGTTTCACAAGAAAGTCGAATCCGTCCTTGAACACTTGACTGATGAGTCACAGGTGCTCTCACGGTTTGAAGGGTTCCCAACAAAGAAGTTGGAAGCAATCAGGATGGCAGCAGCATTACACACAAATTTAAATACAATGCTCAATGAACTACAAAACTGGAAACTAGTGGTTCCATTGGGTCAGCTCCTTGACAAGGCCGAACGCTGCTTCGATAAGATAAAAGGGAAAATAGACACGATGGAACGAACTAAAGACGACGAAGCCAAGAAGTTTCAGAGCCAGAATATCCATTTCGACTTTAATATCCTCATCCGGATCAAAGAAGCCATGGTGGATGTCTCCTCAAGCTGCATGGAGATGGCACTAAAGGAAAGGAGAGAAGCAAAGGCCGCAGGTAAGACTGGAACAAAAACTGATCAGAAGCAAACAAAGATTTGTGTGAAAATGCTGTGGAAGGCTTTTCAGTTTGCTTTTAGGGTTTACACATTCGCTGGTGGACATGATGATCGGGCTGACATGCTCACAAAAGAACTGGCTAATGAAATCGAGTCTGATGGTCCCCAACACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231

Pfam Domains

Protein Families

No domains found.

Protein Analysis

278

Amino Acids

31.36

Weight (kDa)

9.13

Isoelectric Point (pI)

37.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11070 AT1G11070 AT1G11070 AT1G11070 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT4G04980 AT4G04980 AT4G04980
malus_domestica	MD05G1320300.v1.1 MD05G1320400.v1.1 MD05G1320600.v1.1 MD05G1320700.v1.1 MD05G1320900.v1.1 MD10G1299500.v1.1
prunus_persica	Prupe.4G041300_v2.0.a1 Prupe.4G041300_v2.0.a1
pyrus_communis	pycom05g29550 pycom05g29570
rosa_chinensis	RchiOBHm_Chr5g0007591 RchiOBHm_Chr5g0007601 RchiOBHm_Chr5g0021911 RchiOBHm_Chr7g0235111
rosa_laevigata	RLG00000013181 RLG00000031475
rosa_multiflora	Rmu_sc0015365.1_g000002 Rmu_sc0042291.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068760 Rroxscaffold_1G00068770 Rroxscaffold_4G00304220
rosa_rugosa	Rorug04G0429100
rosa_samantha	Rh4DG240000 Rh5AG057100 Rh5AG057200 Rh5BG054200 Rh5CG064000 Rh5CG064100 Rh5DG053300 Rh6BG518400 Rh6CG523900
rosa_wichuraiana	Rw5G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	304
Acc36I	ACCTGC	1 cut(s)	644
AccIII	TCCGGA	1 cut(s)	573
AciI	CCGC	2 cut(s)	16, 651
AclWI	GGATC	2 cut(s)	49, 584
AcsI	RAATTY	1 cut(s)	385
AfiI	CCNNNNNNNGG	1 cut(s)	454
AgsI	TTSAA	5 cut(s)	161, 170, 232, 290, 329
AhlI	ACTAGT	1 cut(s)	424
AluBI	AGCT	4 cut(s)	48, 96, 445, 609
AluI	AGCT	4 cut(s)	48, 96, 445, 609
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	2 cut(s)	14, 604
AlwI	GGATC	2 cut(s)	49, 584
Aor13HI	TCCGGA	1 cut(s)	573
AoxI	GGCC	2 cut(s)	456, 648
ApeKI	GCWGC	5 cut(s)	93, 368, 371, 465, 609
ApoI	RAATTY	1 cut(s)	385
Asp700I	GAANNNNTTC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	818
AvaII	GGWCC	1 cut(s)	818
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	5 cut(s)	105, 380, 383, 452, 596
BccI	CCATC	5 cut(s)	47, 358, 493, 613, 809
BclI	TGATCA	1 cut(s)	676
BcoDI	GTCTC	2 cut(s)	14, 604
BcuI	ACTAGT	1 cut(s)	424
BfaI	CTAG	3 cut(s)	45, 128, 425
BfuAI	ACCTGC	1 cut(s)	644
BisI	GCNGC	6 cut(s)	94, 369, 372, 466, 610, 651
BlsI	GCNGC	6 cut(s)	95, 370, 373, 467, 611, 652
Bme18I	GGWCC	1 cut(s)	818
BmgT120I	GGNCC	1 cut(s)	818
BmiI	GGNNCC	3 cut(s)	335, 432, 820
BmsI	GCATC	3 cut(s)	71, 112, 246
BpuEI	CTTGAG	2 cut(s)	8, 589
BsaJI	CCNNGG	2 cut(s)	220, 588
BsaWI	WCCGGW	1 cut(s)	573
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse1I	ACTGG	3 cut(s)	422, 667, 798
BseAI	TCCGGA	1 cut(s)	573
BseDI	CCNNGG	2 cut(s)	220, 588
BseGI	GGATG	5 cut(s)	58, 62, 369, 570, 601
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseNI	ACTGG	3 cut(s)	422, 667, 798
BseRI	GAGGAG	1 cut(s)	592
BseXI	GCAGC	5 cut(s)	105, 380, 383, 452, 596
BshFI	GGCC	2 cut(s)	458, 650
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	574
BslFI	GGGAC	1 cut(s)	804
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmAI	GTCTC	2 cut(s)	14, 604
BsmFI	GGGAC	1 cut(s)	804
BsnI	GGCC	2 cut(s)	458, 650
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp13I	TCCGGA	1 cut(s)	573
Bsp143I	GATC	5 cut(s)	41, 146, 576, 676, 766
Bsp19I	CCATGG	1 cut(s)	588
BspACI	CCGC	2 cut(s)	16, 651
BspANI	GGCC	2 cut(s)	458, 650
BspEI	TCCGGA	1 cut(s)	573
BspLI	GGNNCC	3 cut(s)	335, 432, 820
BspMI	ACCTGC	1 cut(s)	644
BspPI	GGATC	2 cut(s)	49, 584
BsrI	ACTGG	3 cut(s)	422, 667, 798
BssECI	CCNNGG	2 cut(s)	220, 588
BssMI	GATC	5 cut(s)	41, 146, 576, 676, 766
BssT1I	CCWWGG	2 cut(s)	220, 588
Bst4CI	ACNGT	1 cut(s)	324
BstDSI	CCRYGG	1 cut(s)	588
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstF5I	GGATG	5 cut(s)	58, 62, 369, 570, 601
BstKTI	GATC	5 cut(s)	44, 149, 579, 679, 769
BstMAI	GTCTC	2 cut(s)	14, 604
BstMBI	GATC	5 cut(s)	41, 146, 576, 676, 766
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 650
BstNSI	RCATGY	1 cut(s)	781
BstV1I	GCAGC	5 cut(s)	105, 380, 383, 452, 596
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
BsuRI	GGCC	2 cut(s)	458, 650
BtgI	CCRYGG	1 cut(s)	588
BtsCI	GGATG	5 cut(s)	58, 62, 369, 570, 601
BveI	ACCTGC	1 cut(s)	644
Cfr13I	GGNCC	1 cut(s)	818
CviAII	CATG	6 cut(s)	202, 244, 589, 613, 761, 778
DpnI	GATC	5 cut(s)	43, 148, 578, 678, 768
DpnII	GATC	5 cut(s)	41, 146, 576, 676, 766
DraI	TTTAAA	1 cut(s)	390
DrdI	GACNNNNNNGTC	1 cut(s)	304
DseDI	GACNNNNNNGTC	1 cut(s)	304
Eco130I	CCWWGG	2 cut(s)	220, 588
Eco47I	GGWCC	1 cut(s)	818
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoT14I	CCWWGG	2 cut(s)	220, 588
ErhI	CCWWGG	2 cut(s)	220, 588
FaeI	CATG	6 cut(s)	205, 247, 592, 616, 764, 781
FaiI	YATR	8 cut(s)	154, 189, 203, 245, 590, 614, 762, 779
FaqI	GGGAC	1 cut(s)	804
FatI	CATG	6 cut(s)	201, 243, 588, 612, 760, 777
FbaI	TGATCA	1 cut(s)	676
Fnu4HI	GCNGC	6 cut(s)	94, 369, 372, 466, 610, 651
FokI	GGATG	5 cut(s)	49, 65, 376, 557, 608
Fsp4HI	GCNGC	6 cut(s)	94, 369, 372, 466, 610, 651
FspBI	CTAG	3 cut(s)	45, 128, 425
GluI	GCNGC	6 cut(s)	94, 369, 372, 466, 610, 651
HaeIII	GGCC	2 cut(s)	458, 650
HapII	CCGG	1 cut(s)	574
Hin1II	CATG	6 cut(s)	205, 247, 592, 616, 764, 781
HinfI	GANTC	3 cut(s)	278, 305, 809
HpaII	CCGG	1 cut(s)	574
Hpy166II	GTNNAC	2 cut(s)	742, 758
Hpy188I	TCNGA	4 cut(s)	183, 537, 681, 814
Hpy188III	TCNNGA	3 cut(s)	25, 361, 574
Hpy8I	GTNNAC	2 cut(s)	742, 758
Hpy99I	CGWCG	1 cut(s)	521
HpyAV	CCTTC	4 cut(s)	29, 32, 323, 709
HpyCH4III	ACNGT	1 cut(s)	324
HpyCH4V	TGCA	2 cut(s)	259, 612
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 650
Hsp92II	CATG	6 cut(s)	205, 247, 592, 616, 764, 781
Kpn2I	TCCGGA	1 cut(s)	573
Ksp22I	TGATCA	1 cut(s)	676
Kzo9I	GATC	5 cut(s)	41, 146, 576, 676, 766
LmnI	GCTCC	1 cut(s)	450
Lsp1109I	GCAGC	5 cut(s)	105, 380, 383, 452, 596
LweI	GCATC	3 cut(s)	71, 112, 246
MaeI	CTAG	3 cut(s)	45, 128, 425
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	5 cut(s)	43, 148, 578, 678, 768
MboI	GATC	5 cut(s)	41, 146, 576, 676, 766
MboII	GAAGA	2 cut(s)	182, 185
MflI	RGATCY	1 cut(s)	41
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	3 cut(s)	84, 165, 385
MlyI	GAGTC	2 cut(s)	314, 818
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	2 cut(s)	578, 613
MroI	TCCGGA	1 cut(s)	573
MroXI	GAANNNNTTC	1 cut(s)	177
MseI	TTAA	2 cut(s)	389, 561
MslI	CAYNNNNRTG	2 cut(s)	206, 617
MspI	CCGG	1 cut(s)	574
MwoI	GCNNNNNNNGC	2 cut(s)	54, 650
NcoI	CCATGG	1 cut(s)	588
NdeII	GATC	5 cut(s)	41, 146, 576, 676, 766
NlaIII	CATG	6 cut(s)	205, 247, 592, 616, 764, 781
NlaIV	GGNNCC	3 cut(s)	335, 432, 820
NmuCI	GTSAC	1 cut(s)	306
NspI	RCATGY	1 cut(s)	781
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	6 cut(s)	95, 370, 373, 467, 611, 652
PleI	GAGTC	2 cut(s)	313, 817
PpsI	GAGTC	2 cut(s)	313, 817
PspN4I	GGNNCC	3 cut(s)	335, 432, 820
PspPI	GGNCC	1 cut(s)	818
PsuI	RGATCY	1 cut(s)	41
RseI	CAYNNNNRTG	2 cut(s)	206, 617
SaqAI	TTAA	2 cut(s)	389, 561
SatI	GCNGC	6 cut(s)	94, 369, 372, 466, 610, 651
Sau3AI	GATC	5 cut(s)	41, 146, 576, 676, 766
Sau96I	GGNCC	1 cut(s)	818
SchI	GAGTC	2 cut(s)	314, 818
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	7 cut(s)	36, 50, 98, 315, 447, 611, 658
SfaNI	GCATC	3 cut(s)	71, 112, 246
SinI	GGWCC	1 cut(s)	818
SmiI	ATTTAAAT	1 cut(s)	390
SmiMI	CAYNNNNRTG	2 cut(s)	206, 617
SmlI	CTYRAG	2 cut(s)	23, 604
SmoI	CTYRAG	2 cut(s)	23, 604
SpeI	ACTAGT	1 cut(s)	424
Sse9I	AATT	3 cut(s)	84, 165, 385
SsiI	CCGC	2 cut(s)	16, 651
SspMI	CTAG	3 cut(s)	45, 128, 425
StyI	CCWWGG	2 cut(s)	220, 588
SwaI	ATTTAAAT	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	324
TaqI	TCGA	4 cut(s)	276, 471, 555, 807
TasI	AATT	3 cut(s)	84, 165, 385
TauI	GCSGC	1 cut(s)	653
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	2 cut(s)	389, 561
Tru9I	TTAA	2 cut(s)	389, 561
TseFI	GTSAC	1 cut(s)	306
TseI	GCWGC	5 cut(s)	93, 368, 371, 465, 609
Tsp45I	GTSAC	1 cut(s)	306
TspDTI	ATGAA	3 cut(s)	260, 420, 816
TspGWI	ACGGA	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	818
XagI	CCTNNNNNAGG	1 cut(s)	452
XapI	RAATTY	1 cut(s)	385
XceI	RCATGY	1 cut(s)	781
XmnI	GAANNNNTTC	1 cut(s)	177
XspI	CTAG	3 cut(s)	45, 128, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.