Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001973

Physical Location & Seq

Genomic Coordinates Reverse (-)

44772992 .. 44775596

Gene Structure 2605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1320400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGCCAAAAGATAGGTCTTGCGGAGATTCAGCCAATGAGGTTCGGATGACTGAGCTCCGGAAGAAGATCACCATCTTTAGAGGCATCATCGACCTACCAGCATGTGATGCTTCTGCTGCAATAACTGAGATGGTAATGAGGTTGATGGGAGATCTACAGAAGCTTTTCCCTGAAATTGTGCTGCATAAACAATTGTCGGAGATAAAGGAAGCATGTACAGAGAAGGTCATGGCCTCCTTCTGCAAGGCATTGAAATCTATTGGAGAGTCTTGGATGACAAGTTATGACAGGTTGGACAAACCGAGATATGATTTCCCATCACCCAAGGAGAATGTCAATCAGGATGAACTCGTTGAGACGGTGCTGGAAACGTTTGATTGCTTGATGAAGATGGCACTGGACAAGTTTGATATGATGGATGAGGATGGCCAGAAAAGAGAAGATTACAGCCCTCGGAATTGCTCATTTGGGAAGTTCTTGAGCGATTCGGAGAGCTACGCCTCAGGTTCCACCTGTCCTTCTCCGATCACTCCATCTTCTGTCCTACCCGAGATTGATGGTTCTCCGAGAGCACGAAAGAAGGCCAACATTGGTTCCAAATCACCATTACTTTGGACTCTGAGAGTGCAAGCAGTTGGGAAGCTAAATCCGATTGATGTTAAGAACTTGTCTCTTCACTTATCAAAACAAGGAGCTCATGGTACCAACAATGGCCTGGACAAGATTGAAAATTTGTTTGAAGACCCACCAATTGGGACAGAATTAGAGAGCAACCCTCAAAAGACAATTGCAGCAACAGATGAGATGAGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

30.26

Weight (kDa)

5.45

Isoelectric Point (pI)

56.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11070 AT1G11070 AT1G11070 AT1G11070 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT4G04980 AT4G04980 AT4G04980
malus_domestica	MD05G1320300.v1.1 MD05G1320400.v1.1 MD05G1320600.v1.1 MD05G1320700.v1.1 MD05G1320900.v1.1 MD10G1299500.v1.1
prunus_persica	Prupe.4G041300_v2.0.a1 Prupe.4G041300_v2.0.a1
pyrus_communis	pycom05g29550 pycom05g29570
rosa_chinensis	RchiOBHm_Chr5g0007591 RchiOBHm_Chr5g0007601 RchiOBHm_Chr5g0021911 RchiOBHm_Chr7g0235111
rosa_laevigata	RLG00000013181 RLG00000031475
rosa_multiflora	Rmu_sc0015365.1_g000002 Rmu_sc0042291.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068760 Rroxscaffold_1G00068770 Rroxscaffold_4G00304220
rosa_rugosa	Rorug04G0429100
rosa_samantha	Rh4DG240000 Rh5AG057100 Rh5AG057200 Rh5BG054200 Rh5CG064000 Rh5CG064100 Rh5DG053300 Rh6BG518400 Rh6CG523900
rosa_wichuraiana	Rw5G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	701
AccB1I	GGYRCC	1 cut(s)	701
AccB7I	CCANNNNNTGG	1 cut(s)	752
AccIII	TCCGGA	1 cut(s)	57
AciI	CCGC	1 cut(s)	21
AclI	AACGTT	1 cut(s)	371
AcoI	YGGCCR	1 cut(s)	427
AcsI	RAATTY	1 cut(s)	730
AfaI	GTAC	2 cut(s)	217, 703
AfiI	CCNNNNNNNGG	1 cut(s)	752
AgsI	TTSAA	3 cut(s)	253, 728, 740
AjnI	CCWGG	1 cut(s)	714
AluBI	AGCT	5 cut(s)	55, 163, 495, 643, 695
AluI	AGCT	5 cut(s)	55, 163, 495, 643, 695
Alw21I	GWGCWC	3 cut(s)	57, 574, 697
Alw26I	GTCTC	2 cut(s)	350, 675
Ama87I	CYCGRG	1 cut(s)	548
Aor13HI	TCCGGA	1 cut(s)	57
AoxI	GGCC	4 cut(s)	231, 427, 582, 712
ApeKI	GCWGC	3 cut(s)	116, 181, 791
ApoI	RAATTY	1 cut(s)	730
ArsI	GACNNNNNNTTYG	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	164
Asp718I	GGTACC	1 cut(s)	701
AsuHPI	GGTGA	3 cut(s)	61, 312, 594
AvaI	CYCGRG	1 cut(s)	548
AxyI	CCTNAGG	1 cut(s)	502
BalI	TGGCCA	1 cut(s)	429
BanI	GGYRCC	1 cut(s)	701
BanII	GRGCYC	2 cut(s)	57, 697
BbsI	GAAGAC	1 cut(s)	747
Bbv12I	GWGCWC	3 cut(s)	57, 574, 697
BbvI	GCAGC	3 cut(s)	103, 168, 803
BccI	CCATC	9 cut(s)	80, 124, 139, 325, 385, 409, 419, 541, 551
BciT130I	CCWGG	1 cut(s)	716
BcoDI	GTCTC	2 cut(s)	350, 675
BfmI	CTRYAG	1 cut(s)	155
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	3 cut(s)	117, 182, 792
BlsI	GCNGC	3 cut(s)	118, 183, 793
Bme1390I	CCNGG	1 cut(s)	716
BmeT110I	CYCGRG	1 cut(s)	548
BmiI	GGNNCC	3 cut(s)	508, 595, 703
BmrFI	CCNGG	1 cut(s)	716
BmsI	GCATC	2 cut(s)	93, 97
BpiI	GAAGAC	1 cut(s)	747
BplI	GAGNNNNNCTC	2 cut(s)	760, 792
BpuEI	CTTGAG	1 cut(s)	499
BsaBI	GATNNNNATC	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	324, 452
BsaWI	WCCGGW	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	1 cut(s)	752
Bse1I	ACTGG	1 cut(s)	402
Bse21I	CCTNAGG	1 cut(s)	502
Bse8I	GATNNNNATC	1 cut(s)	71
BseAI	TCCGGA	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	716
BseDI	CCNNGG	2 cut(s)	324, 452
BseGI	GGATG	5 cut(s)	51, 279, 349, 424, 430
BseJI	GATNNNNATC	1 cut(s)	71
BseLI	CCNNNNNNNGG	1 cut(s)	752
BseMII	CTCAG	4 cut(s)	42, 117, 516, 611
BseNI	ACTGG	1 cut(s)	402
BseXI	GCAGC	3 cut(s)	103, 168, 803
BshFI	GGCC	4 cut(s)	233, 429, 584, 714
BshNI	GGYRCC	1 cut(s)	701
BsiHKAI	GWGCWC	3 cut(s)	57, 574, 697
BsiHKCI	CYCGRG	1 cut(s)	548
BsiSI	CCGG	1 cut(s)	58
BslFI	GGGAC	1 cut(s)	769
BslI	CCNNNNNNNGG	1 cut(s)	752
BsmAI	GTCTC	2 cut(s)	350, 675
BsmBI	CGTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	769
BsnI	GGCC	4 cut(s)	233, 429, 584, 714
BsoBI	CYCGRG	1 cut(s)	548
Bsp1286I	GDGCHC	3 cut(s)	57, 574, 697
Bsp13I	TCCGGA	1 cut(s)	57
Bsp1407I	TGTACA	1 cut(s)	215
Bsp143I	GATC	3 cut(s)	66, 151, 525
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	4 cut(s)	233, 429, 584, 714
BspCNI	CTCAG	4 cut(s)	43, 118, 515, 612
BspEI	TCCGGA	1 cut(s)	57
BspLI	GGNNCC	3 cut(s)	508, 595, 703
BspT107I	GGYRCC	1 cut(s)	701
BsrGI	TGTACA	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	402
BssECI	CCNNGG	2 cut(s)	324, 452
BssMI	GATC	3 cut(s)	66, 151, 525
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	716
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	678
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstAUI	TGTACA	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	630
BstDEI	CTNAG	4 cut(s)	51, 126, 502, 620
BstF5I	GGATG	5 cut(s)	51, 279, 349, 424, 430
BstKTI	GATC	3 cut(s)	69, 154, 528
BstMAI	GTCTC	2 cut(s)	350, 675
BstMBI	GATC	3 cut(s)	66, 151, 525
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 116
BstNI	CCWGG	1 cut(s)	716
BstNSI	RCATGY	2 cut(s)	105, 216
BstSCI	CCNGG	1 cut(s)	714
BstSFI	CTRYAG	1 cut(s)	155
BstV1I	GCAGC	3 cut(s)	103, 168, 803
BstV2I	GAAGAC	1 cut(s)	747
BstX2I	RGATCY	1 cut(s)	151
BstXI	CCANNNNNNTGG	1 cut(s)	612
BstYI	RGATCY	1 cut(s)	151
Bsu36I	CCTNAGG	1 cut(s)	502
BsuRI	GGCC	4 cut(s)	233, 429, 584, 714
BtsCI	GGATG	5 cut(s)	51, 279, 349, 424, 430
BtsIMutI	CAGTG	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	630
Csp6I	GTAC	2 cut(s)	216, 702
CviAII	CATG	4 cut(s)	102, 213, 229, 698
CviQI	GTAC	2 cut(s)	216, 702
DdeI	CTNAG	4 cut(s)	51, 126, 502, 620
DpnI	GATC	3 cut(s)	68, 153, 527
DpnII	GATC	3 cut(s)	66, 151, 525
EaeI	YGGCCR	1 cut(s)	427
Eam1104I	CTCTTC	1 cut(s)	678
EarI	CTCTTC	1 cut(s)	678
Ecl136II	GAGCTC	2 cut(s)	55, 695
Eco130I	CCWWGG	1 cut(s)	324
Eco24I	GRGCYC	2 cut(s)	57, 697
Eco53kI	GAGCTC	2 cut(s)	55, 695
Eco81I	CCTNAGG	1 cut(s)	502
Eco88I	CYCGRG	1 cut(s)	548
EcoICRI	GAGCTC	2 cut(s)	55, 695
EcoRII	CCWGG	1 cut(s)	714
EcoT14I	CCWWGG	1 cut(s)	324
EcoT38I	GRGCYC	2 cut(s)	57, 697
ErhI	CCWWGG	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	350
FaeI	CATG	4 cut(s)	105, 216, 232, 701
FaiI	YATR	8 cut(s)	103, 186, 214, 230, 285, 309, 413, 699
FaqI	GGGAC	1 cut(s)	769
FatI	CATG	4 cut(s)	101, 212, 228, 697
Fnu4HI	GCNGC	3 cut(s)	117, 182, 792
FokI	GGATG	5 cut(s)	58, 286, 356, 431, 437
FriOI	GRGCYC	2 cut(s)	57, 697
Fsp4HI	GCNGC	3 cut(s)	117, 182, 792
GluI	GCNGC	3 cut(s)	117, 182, 792
HaeIII	GGCC	4 cut(s)	233, 429, 584, 714
HapII	CCGG	1 cut(s)	58
Hin1II	CATG	4 cut(s)	105, 216, 232, 701
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	4 cut(s)	26, 266, 485, 616
HpaII	CCGG	1 cut(s)	58
HphI	GGTGA	3 cut(s)	61, 312, 594
Hpy188I	TCNGA	8 cut(s)	45, 199, 456, 490, 525, 567, 621, 651
Hpy188III	TCNNGA	3 cut(s)	58, 341, 478
HpyAV	CCTTC	4 cut(s)	217, 247, 528, 574
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	5 cut(s)	119, 184, 243, 628, 791
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 116
HpyF3I	CTNAG	4 cut(s)	51, 126, 502, 620
HpySE526I	ACGT	1 cut(s)	371
Hsp92II	CATG	4 cut(s)	105, 216, 232, 701
Kpn2I	TCCGGA	1 cut(s)	57
KpnI	GGTACC	1 cut(s)	705
Kzo9I	GATC	3 cut(s)	66, 151, 525
LmnI	GCTCC	2 cut(s)	60, 692
Lsp1109I	GCAGC	3 cut(s)	103, 168, 803
LweI	GCATC	2 cut(s)	93, 97
MaeII	ACGT	1 cut(s)	371
MalI	GATC	3 cut(s)	68, 153, 527
MboI	GATC	3 cut(s)	66, 151, 525
MboII	GAAGA	7 cut(s)	73, 76, 400, 452, 528, 665, 752
MfeI	CAATTG	3 cut(s)	191, 750, 786
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	3 cut(s)	57, 574, 697
MlsI	TGGCCA	1 cut(s)	429
MluCI	AATT	7 cut(s)	174, 191, 457, 730, 750, 761, 786
MluNI	TGGCCA	1 cut(s)	429
MlyI	GAGTC	2 cut(s)	275, 610
MmeI	TCCRAC	2 cut(s)	177, 273
MnlI	CCTC	9 cut(s)	31, 74, 132, 244, 415, 462, 511, 786, 801
Mox20I	TGGCCA	1 cut(s)	429
MroI	TCCGGA	1 cut(s)	57
MroXI	GAANNNNTTC	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	429
MseI	TTAA	1 cut(s)	660
Msp20I	TGGCCA	1 cut(s)	429
MspI	CCGG	1 cut(s)	58
MspR9I	CCNGG	1 cut(s)	716
MunI	CAATTG	3 cut(s)	191, 750, 786
MvaI	CCWGG	1 cut(s)	716
MwoI	GCNNNNNNNGC	2 cut(s)	107, 116
NdeII	GATC	3 cut(s)	66, 151, 525
NlaIII	CATG	4 cut(s)	105, 216, 232, 701
NlaIV	GGNNCC	3 cut(s)	508, 595, 703
NspI	RCATGY	2 cut(s)	105, 216
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	2 cut(s)	26, 485
PflMI	CCANNNNNTGG	1 cut(s)	752
PkrI	GCNGC	3 cut(s)	118, 183, 793
PleI	GAGTC	2 cut(s)	274, 610
PpsI	GAGTC	2 cut(s)	274, 610
Psp124BI	GAGCTC	2 cut(s)	57, 697
Psp1406I	AACGTT	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	714
PspGI	CCWGG	1 cut(s)	714
PspN4I	GGNNCC	3 cut(s)	508, 595, 703
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	2 cut(s)	217, 703
RsaNI	GTAC	2 cut(s)	216, 702
SacI	GAGCTC	2 cut(s)	57, 697
SaqAI	TTAA	1 cut(s)	660
SatI	GCNGC	3 cut(s)	117, 182, 792
Sau3AI	GATC	3 cut(s)	66, 151, 525
SchI	GAGTC	2 cut(s)	275, 610
ScrFI	CCNGG	1 cut(s)	716
SduI	GDGCHC	3 cut(s)	57, 574, 697
SfaNI	GCATC	2 cut(s)	93, 97
SfcI	CTRYAG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
Sse9I	AATT	7 cut(s)	174, 191, 457, 730, 750, 761, 786
SsiI	CCGC	1 cut(s)	21
SstI	GAGCTC	2 cut(s)	57, 697
StyD4I	CCNGG	1 cut(s)	714
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	1 cut(s)	90
TasI	AATT	7 cut(s)	174, 191, 457, 730, 750, 761, 786
TatI	WGTACW	1 cut(s)	215
TfiI	GAWTC	2 cut(s)	26, 485
Tru1I	TTAA	1 cut(s)	660
Tru9I	TTAA	1 cut(s)	660
TscAI	CASTG	1 cut(s)	402
TseI	GCWGC	3 cut(s)	116, 181, 791
TspDTI	ATGAA	2 cut(s)	360, 401
TspRI	CASTG	1 cut(s)	402
Van91I	CCANNNNNTGG	1 cut(s)	752
XapI	RAATTY	1 cut(s)	730
XceI	RCATGY	2 cut(s)	105, 216
XcmI	CCANNNNNNNNNTGG	1 cut(s)	712
XmnI	GAANNNNTTC	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.