Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001973

Physical Location & Seq

Genomic Coordinates Reverse (-)

59769311 .. 59773370

Gene Structure 4060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21072

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGCTGATGCTGTAGCAGATATGACAAAAAGATCAGCATACTTTCAACAAATTGAAGAAGATGTTCTGAAATATTCAAAGGCTTTAACAGATATGAGAACTACCCTGAGTTTTTTCCAAACAAAAGACATGAATGAGCTGCTAGAGTTCCACAAGAAATTAGAATCCATTCTTGAACACTTGACTGATGAGACACAGGTCTTATCAAGGTTTGAAGGATTCCCTACAAAGAAGTTAAAAACAATGAGGACAGCAGCAACACTCCACTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231

Pfam Domains

Protein Families

No domains found.

Protein Analysis

90

Amino Acids

10.48

Weight (kDa)

6.28

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11070 AT1G11070 AT1G11070 AT1G11070 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT4G04980 AT4G04980 AT4G04980
malus_domestica	MD05G1320300.v1.1 MD05G1320400.v1.1 MD05G1320600.v1.1 MD05G1320700.v1.1 MD05G1320900.v1.1 MD10G1299500.v1.1
prunus_persica	Prupe.4G041300_v2.0.a1 Prupe.4G041300_v2.0.a1
pyrus_communis	pycom05g29550 pycom05g29570
rosa_chinensis	RchiOBHm_Chr5g0007591 RchiOBHm_Chr5g0007601 RchiOBHm_Chr5g0021911 RchiOBHm_Chr7g0235111
rosa_laevigata	RLG00000013181 RLG00000031475
rosa_multiflora	Rmu_sc0015365.1_g000002 Rmu_sc0042291.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068760 Rroxscaffold_1G00068770 Rroxscaffold_4G00304220
rosa_rugosa	Rorug04G0429100
rosa_samantha	Rh4DG240000 Rh5AG057100 Rh5AG057200 Rh5BG054200 Rh5CG064000 Rh5CG064100 Rh5DG053300 Rh6BG518400 Rh6CG523900
rosa_wichuraiana	Rw5G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	5 cut(s)	47, 56, 78, 176, 215
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw26I	GTCTC	1 cut(s)	185
ApeKI	GCWGC	2 cut(s)	139, 254
Asp700I	GAANNNNTTC	2 cut(s)	63, 168
BbvI	GCAGC	2 cut(s)	126, 266
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	12
BisI	GCNGC	2 cut(s)	140, 255
BlsI	GCNGC	2 cut(s)	141, 256
BoxI	GACNNNNGTC	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	98
BseXI	GCAGC	2 cut(s)	126, 266
BsmAI	GTCTC	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	32
BspCNI	CTCAG	1 cut(s)	99
BssMI	GATC	1 cut(s)	32
BstDEI	CTNAG	1 cut(s)	107
BstKTI	GATC	1 cut(s)	35
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	1 cut(s)	32
BstPAI	GACNNNNGTC	1 cut(s)	197
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	2 cut(s)	126, 266
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	3 cut(s)	5, 83, 139
CviKI_1	RGCY	3 cut(s)	5, 83, 139
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	1 cut(s)	34
DpnII	GATC	1 cut(s)	32
FaeI	CATG	1 cut(s)	133
FaiI	YATR	5 cut(s)	23, 40, 95, 131, 271
FatI	CATG	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	140, 255
Fsp4HI	GCNGC	2 cut(s)	140, 255
FspBI	CTAG	1 cut(s)	143
GluI	GCNGC	2 cut(s)	140, 255
Hin1II	CATG	1 cut(s)	133
HinfI	GANTC	2 cut(s)	164, 219
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	209
HpyF3I	CTNAG	1 cut(s)	107
Hsp92II	CATG	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	32
LpnPI	CCDG	2 cut(s)	119, 182
Lsp1109I	GCAGC	2 cut(s)	126, 266
MaeI	CTAG	1 cut(s)	143
MalI	GATC	1 cut(s)	34
MboI	GATC	1 cut(s)	32
MboII	GAAGA	2 cut(s)	68, 71
MluCI	AATT	2 cut(s)	51, 158
MnlI	CCTC	1 cut(s)	240
MroXI	GAANNNNTTC	2 cut(s)	63, 168
MseI	TTAA	2 cut(s)	86, 236
NdeII	GATC	1 cut(s)	32
NlaIII	CATG	1 cut(s)	133
PdmI	GAANNNNTTC	2 cut(s)	63, 168
PfeI	GAWTC	2 cut(s)	164, 219
PkrI	GCNGC	2 cut(s)	141, 256
PshAI	GACNNNNGTC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	86, 236
SatI	GCNGC	2 cut(s)	140, 255
Sau3AI	GATC	1 cut(s)	32
SetI	ASST	3 cut(s)	141, 201, 212
SfcI	CTRYAG	1 cut(s)	12
SgeI	CNNG	8 cut(s)	118, 142, 155, 166, 185, 193, 209, 219
Sse9I	AATT	2 cut(s)	51, 158
SspI	AATATT	1 cut(s)	74
SspMI	CTAG	1 cut(s)	143
TasI	AATT	2 cut(s)	51, 158
TfiI	GAWTC	2 cut(s)	164, 219
Tru1I	TTAA	2 cut(s)	86, 236
Tru9I	TTAA	2 cut(s)	86, 236
TseI	GCWGC	2 cut(s)	139, 254
TspDTI	ATGAA	1 cut(s)	146
XmnI	GAANNNNTTC	2 cut(s)	63, 168
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.