Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001973

Physical Location & Seq

Genomic Coordinates Forward (+)

27129629 .. 27131885

Gene Structure 2257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013181

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGGCAGCTTTGGAAGCGCCAAGAGAGGTCCAAGGGATGCCAAACCACTTCAAGAAAAGCTGGCCAAGAAGGCTGATAATGGTGCAGGGGTGGCCGGAACGAATTCCTCCTCCGGAGGTGAAGCTGGGAGCAGCACAGCAGGTCGAAAAGGCATGGCTGATGCTCTAGCAGATATGACGAAAAGAGTGCAGGATTTATCAGGGTTTGAGGGATTCCCCACAAAGAAGTTAAAAAAAATGAGGACAGCAGCAGCATTCGACTCATGGTTAAATGCAATGATCACAGAACGACACAATTGTAAAATAGACTCCCCTATGTCTGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

110

Amino Acids

11.4

Weight (kDa)

9.87

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11070 AT1G11070 AT1G11070 AT1G11070 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT4G04980 AT4G04980 AT4G04980
malus_domestica	MD05G1320300.v1.1 MD05G1320400.v1.1 MD05G1320600.v1.1 MD05G1320700.v1.1 MD05G1320900.v1.1 MD10G1299500.v1.1
prunus_persica	Prupe.4G041300_v2.0.a1 Prupe.4G041300_v2.0.a1
pyrus_communis	pycom05g29550 pycom05g29570
rosa_chinensis	RchiOBHm_Chr5g0007591 RchiOBHm_Chr5g0007601 RchiOBHm_Chr5g0021911 RchiOBHm_Chr7g0235111
rosa_laevigata	RLG00000013181 RLG00000031475
rosa_multiflora	Rmu_sc0015365.1_g000002 Rmu_sc0042291.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068760 Rroxscaffold_1G00068770 Rroxscaffold_4G00304220
rosa_rugosa	Rorug04G0429100
rosa_samantha	Rh4DG240000 Rh5AG057100 Rh5AG057200 Rh5BG054200 Rh5CG064000 Rh5CG064100 Rh5DG053300 Rh6BG518400 Rh6CG523900
rosa_wichuraiana	Rw5G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	131
AccIII	TCCGGA	1 cut(s)	113
AcoI	YGGCCR	2 cut(s)	63, 93
AcsI	RAATTY	1 cut(s)	103
AgsI	TTSAA	1 cut(s)	53
AluBI	AGCT	3 cut(s)	9, 61, 125
AluI	AGCT	3 cut(s)	9, 61, 125
Aor13HI	TCCGGA	1 cut(s)	113
AoxI	GGCC	2 cut(s)	63, 93
ApeKI	GCWGC	4 cut(s)	6, 132, 248, 251
ApoI	RAATTY	1 cut(s)	103
Asp700I	GAANNNNTTC	1 cut(s)	103
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	29
BalI	TGGCCA	1 cut(s)	65
BbvI	GCAGC	4 cut(s)	18, 144, 260, 263
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BclI	TGATCA	1 cut(s)	279
BfaI	CTAG	1 cut(s)	167
BfoI	RGCGCY	1 cut(s)	21
BfuAI	ACCTGC	1 cut(s)	131
BglI	GCCNNNNNGGC	1 cut(s)	71
BisI	GCNGC	4 cut(s)	7, 133, 249, 252
BlsI	GCNGC	4 cut(s)	8, 134, 250, 253
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	29
BmsI	GCATC	2 cut(s)	28, 151
BsaJI	CCNNGG	1 cut(s)	32
BsaWI	WCCGGW	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	282
BseAI	TCCGGA	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	32
BseGI	GGATG	1 cut(s)	43
BseMI	GCAATG	1 cut(s)	282
BseRI	GAGGAG	1 cut(s)	100
BseXI	GCAGC	4 cut(s)	18, 144, 260, 263
BseYI	CCCAGC	1 cut(s)	125
BsgI	GTGCAG	2 cut(s)	105, 209
BshFI	GGCC	2 cut(s)	65, 95
BsiSI	CCGG	2 cut(s)	96, 114
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	2 cut(s)	65, 95
Bsp13I	TCCGGA	1 cut(s)	113
Bsp143I	GATC	1 cut(s)	279
BspANI	GGCC	2 cut(s)	65, 95
BspEI	TCCGGA	1 cut(s)	113
BspMI	ACCTGC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	32
BssMI	GATC	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	43
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	279
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 71, 92
BstV1I	GCAGC	4 cut(s)	18, 144, 260, 263
BsuRI	GGCC	2 cut(s)	65, 95
BtsCI	GGATG	1 cut(s)	43
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	1 cut(s)	63
CfoI	GCGC	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	29
CviAII	CATG	2 cut(s)	154, 264
CviJI	RGCY	7 cut(s)	9, 61, 65, 74, 95, 125, 158
CviKI_1	RGCY	7 cut(s)	9, 61, 65, 74, 95, 125, 158
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
EaeI	YGGCCR	2 cut(s)	63, 93
Eco130I	CCWWGG	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	29
EcoRI	GAATTC	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	2 cut(s)	157, 267
FaiI	YATR	4 cut(s)	155, 176, 265, 317
FatI	CATG	2 cut(s)	153, 263
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	4 cut(s)	7, 133, 249, 252
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	4 cut(s)	7, 133, 249, 252
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	4 cut(s)	7, 133, 249, 252
GsaI	CCCAGC	1 cut(s)	129
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	2 cut(s)	65, 95
HapII	CCGG	2 cut(s)	96, 114
HhaI	GCGC	1 cut(s)	20
Hin1II	CATG	2 cut(s)	157, 267
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HinfI	GANTC	3 cut(s)	213, 260, 308
HpaII	CCGG	2 cut(s)	96, 114
HphI	GGTGA	1 cut(s)	131
Hpy188III	TCNNGA	2 cut(s)	53, 114
HpyAV	CCTTC	1 cut(s)	64
HpyCH4V	TGCA	3 cut(s)	86, 190, 275
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 71, 92
Hsp92II	CATG	2 cut(s)	157, 267
HspAI	GCGC	1 cut(s)	18
Kpn2I	TCCGGA	1 cut(s)	113
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	1 cut(s)	279
LmnI	GCTCC	1 cut(s)	129
LpnPI	CCDG	8 cut(s)	47, 72, 109, 111, 126, 127, 176, 186
Lsp1109I	GCAGC	4 cut(s)	18, 144, 260, 263
LweI	GCATC	2 cut(s)	28, 151
MaeI	CTAG	1 cut(s)	167
MalI	GATC	1 cut(s)	281
MboI	GATC	1 cut(s)	279
MfeI	CAATTG	1 cut(s)	295
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	2 cut(s)	103, 295
MluNI	TGGCCA	1 cut(s)	65
MlyI	GAGTC	2 cut(s)	254, 302
MnlI	CCTC	6 cut(s)	20, 110, 118, 121, 202, 234
Mox20I	TGGCCA	1 cut(s)	65
MroI	TCCGGA	1 cut(s)	113
MroXI	GAANNNNTTC	1 cut(s)	103
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	2 cut(s)	230, 269
Msp20I	TGGCCA	1 cut(s)	65
MspI	CCGG	2 cut(s)	96, 114
MunI	CAATTG	1 cut(s)	295
Mva1269I	GAATGC	1 cut(s)	254
MwoI	GCNNNNNNNGC	3 cut(s)	15, 71, 92
NdeII	GATC	1 cut(s)	279
NlaIII	CATG	2 cut(s)	157, 267
PctI	GAATGC	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	213
PkrI	GCNGC	4 cut(s)	8, 134, 250, 253
PleI	GAGTC	2 cut(s)	254, 302
PpsI	GAGTC	2 cut(s)	254, 302
PspFI	CCCAGC	1 cut(s)	125
PspPI	GGNCC	1 cut(s)	29
SaqAI	TTAA	2 cut(s)	230, 269
SatI	GCNGC	4 cut(s)	7, 133, 249, 252
Sau3AI	GATC	1 cut(s)	279
Sau96I	GGNCC	1 cut(s)	29
SchI	GAGTC	2 cut(s)	254, 302
SetI	ASST	6 cut(s)	11, 31, 63, 121, 127, 145
SfaNI	GCATC	2 cut(s)	28, 151
SinI	GGWCC	1 cut(s)	29
Sse9I	AATT	2 cut(s)	103, 295
SspMI	CTAG	1 cut(s)	167
StyI	CCWWGG	1 cut(s)	32
TaqI	TCGA	2 cut(s)	145, 258
TasI	AATT	2 cut(s)	103, 295
TfiI	GAWTC	1 cut(s)	213
Tru1I	TTAA	2 cut(s)	230, 269
Tru9I	TTAA	2 cut(s)	230, 269
TseI	GCWGC	4 cut(s)	6, 132, 248, 251
VpaK11BI	GGWCC	1 cut(s)	29
XapI	RAATTY	1 cut(s)	103
XmnI	GAANNNNTTC	1 cut(s)	103
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.