Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001973

Physical Location & Seq

Genomic Coordinates Forward (+)

4845270 .. 4846243

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28863

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCAAGGGACAAGTTTGATATGATGGACGAGGATGAGCAGAAGAGCAACTGCAGCCCTCGCGGTAACTCATTTGGGAGATTCTTAGGCGACACCGATTCAGAGAGTTACACCTCTAGCTGCCCTTCTCCAATCACACCATCCTCTGTCCTTCCTGAGGTGATAGATAGTGGTTCCCCCAAATCTCAAAGGAGATCGAAAGCTTCTTCCAGATCACCCGTTCTCTTGACTTTAAGAGTGCAGGCAGTGGGGAAACTCAACCCAATTGATGTTAAGCATTTGTCTCTTCACTTATCAAATGAAGGAGCCTCTGATAAAAGTAACAAATTGGTTGATGAACCATCAAGAGAGACAGTGGAAAGCAGCTCTGAGAAGTCATCAGAGGAAGAAAACAGATGTAGCAGCACAAGAGAGGACACAGCAGAGGTCCCAAATCCAAGTTTGAATGAGAATGATAGCAGAACTGTTATAATAGACAACAGAAACTGTGATGATGTTGGCATTTCAACCACAACCCCTGAAACTTTGGCAGAAGATATAACAGAATTGCCTCCACCCTCACCACCACCAAATCTCACAACAACAATACCTGTAACTCCACCACCACCACCACCATCACTACCCACATTGCAGCCAAAGGCTGCTGCGGCGCCTCCCTCACCGCCAACAACACTGCCTGTATCACCATCACTGCCCACGTTGCAGCCAACTGTTGCAGCACTACCACCCCCGCCCCCACCGCCACCACCAACATTAGCACCACTAAATGCAGCACCACCTCCACCTAAGGCACTGCGATCAACAAAAGCTGCTCCACCACCATCACTACCCACATTGCAGCCAAAGGCTGCTGCGACACCCCCTCACCACCACTACCACCAACACTGCCTGTACCGCCATCACTGCCCACGTTGCAGCCAACTGTTGCAGCACCGCCACCCCCACCACCAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231

Pfam Domains

Protein Families

No domains found.

Protein Analysis

318

Amino Acids

34.18

Weight (kDa)

6.26

Isoelectric Point (pI)

83.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11070 AT1G11070 AT1G11070 AT1G11070 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT4G04980 AT4G04980 AT4G04980
malus_domestica	MD05G1320300.v1.1 MD05G1320400.v1.1 MD05G1320600.v1.1 MD05G1320700.v1.1 MD05G1320900.v1.1 MD10G1299500.v1.1
prunus_persica	Prupe.4G041300_v2.0.a1 Prupe.4G041300_v2.0.a1
pyrus_communis	pycom05g29550 pycom05g29570
rosa_chinensis	RchiOBHm_Chr5g0007591 RchiOBHm_Chr5g0007601 RchiOBHm_Chr5g0021911 RchiOBHm_Chr7g0235111
rosa_laevigata	RLG00000013181 RLG00000031475
rosa_multiflora	Rmu_sc0015365.1_g000002 Rmu_sc0042291.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068760 Rroxscaffold_1G00068770 Rroxscaffold_4G00304220
rosa_rugosa	Rorug04G0429100
rosa_samantha	Rh4DG240000 Rh5AG057100 Rh5AG057200 Rh5BG054200 Rh5CG064000 Rh5CG064100 Rh5DG053300 Rh6BG518400 Rh6CG523900
rosa_wichuraiana	Rw5G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
AccB1I	GGYRCC	1 cut(s)	649
AccII	CGCG	1 cut(s)	63
AciI	CCGC	7 cut(s)	63, 647, 662, 731, 740, 895, 934
AcyI	GRCGYC	1 cut(s)	650
AfaI	GTAC	1 cut(s)	893
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	2 cut(s)	445, 507
AluBI	AGCT	4 cut(s)	120, 203, 366, 809
AluI	AGCT	4 cut(s)	120, 203, 366, 809
Alw26I	GTCTC	2 cut(s)	288, 344
AlwNI	CAGNNNCTG	1 cut(s)	486
AspLEI	GCGC	1 cut(s)	652
AspS9I	GGNCC	1 cut(s)	427
AsuHPI	GGTGA	6 cut(s)	172, 207, 552, 651, 675, 857
AvaII	GGWCC	1 cut(s)	427
AxyI	CCTNAGG	2 cut(s)	156, 786
BanI	GGYRCC	1 cut(s)	649
BccI	CCATC	7 cut(s)	19, 148, 349, 622, 694, 829, 906
BcoDI	GTCTC	2 cut(s)	288, 344
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	52
BfoI	RGCGCY	1 cut(s)	653
Bme18I	GGWCC	1 cut(s)	427
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	4 cut(s)	175, 307, 429, 651
BsaHI	GRCGYC	1 cut(s)	650
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse21I	CCTNAGG	2 cut(s)	156, 786
Bse3DI	GCAATG	2 cut(s)	626, 833
BseGI	GGATG	2 cut(s)	40, 140
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMI	GCAATG	2 cut(s)	626, 833
BseMII	CTCAG	2 cut(s)	147, 360
BsgI	GTGCAG	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	63
BshNI	GGYRCC	1 cut(s)	649
BslFI	GGGAC	2 cut(s)	23, 413
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	2 cut(s)	288, 344
BsmFI	GGGAC	2 cut(s)	23, 413
Bsp143I	GATC	3 cut(s)	194, 212, 797
BspACI	CCGC	7 cut(s)	63, 647, 662, 731, 740, 895, 934
BspCNI	CTCAG	2 cut(s)	148, 361
BspFNI	CGCG	1 cut(s)	63
BspLI	GGNNCC	4 cut(s)	175, 307, 429, 651
BspMAI	CTGCAG	1 cut(s)	56
BspQI	GCTCTTC	1 cut(s)	38
BspT107I	GGYRCC	1 cut(s)	649
BsrDI	GCAATG	2 cut(s)	626, 833
BssMI	GATC	3 cut(s)	194, 212, 797
BssNI	GRCGYC	1 cut(s)	650
Bst4CI	ACNGT	5 cut(s)	355, 466, 488, 712, 924
Bst6I	CTCTTC	2 cut(s)	38, 291
BstACI	GRCGYC	1 cut(s)	650
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	4 cut(s)	85, 156, 369, 786
BstENI	CCTNNNNNAGG	1 cut(s)	155
BstF5I	GGATG	2 cut(s)	40, 140
BstFNI	CGCG	1 cut(s)	63
BstH2I	RGCGCY	1 cut(s)	653
BstHHI	GCGC	1 cut(s)	652
BstKTI	GATC	3 cut(s)	197, 215, 800
BstMAI	GTCTC	2 cut(s)	288, 344
BstMBI	GATC	3 cut(s)	194, 212, 797
BstMWI	GCNNNNNNNGC	8 cut(s)	54, 60, 647, 700, 739, 894, 903, 912
BstSFI	CTRYAG	1 cut(s)	52
BstUI	CGCG	1 cut(s)	63
Bsu36I	CCTNAGG	2 cut(s)	156, 786
BtsCI	GGATG	2 cut(s)	40, 140
BtsI	GCAGTG	6 cut(s)	252, 671, 689, 791, 883, 901
BtsIMutI	CAGTG	7 cut(s)	252, 360, 671, 689, 791, 883, 901
Cac8I	GCNNGC	1 cut(s)	243
CaiI	CAGNNNCTG	1 cut(s)	486
CfoI	GCGC	1 cut(s)	652
Cfr13I	GGNCC	1 cut(s)	427
Csp6I	GTAC	1 cut(s)	892
CviQI	GTAC	1 cut(s)	892
DdeI	CTNAG	4 cut(s)	85, 156, 369, 786
DinI	GGCGCC	1 cut(s)	651
DpnI	GATC	3 cut(s)	196, 214, 799
DpnII	GATC	3 cut(s)	194, 212, 797
Eam1104I	CTCTTC	2 cut(s)	38, 291
EarI	CTCTTC	2 cut(s)	38, 291
Eco47I	GGWCC	1 cut(s)	427
Eco81I	CCTNAGG	2 cut(s)	156, 786
EcoNI	CCTNNNNNAGG	1 cut(s)	155
EcoO109I	RGGNCCY	1 cut(s)	427
EgeI	GGCGCC	1 cut(s)	651
EheI	GGCGCC	1 cut(s)	651
FaiI	YATR	3 cut(s)	23, 470, 539
FaqI	GGGAC	2 cut(s)	23, 413
FauI	CCCGC	1 cut(s)	738
FokI	GGATG	2 cut(s)	47, 127
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	651
HaeII	RGCGCY	1 cut(s)	653
HhaI	GCGC	1 cut(s)	652
Hin1I	GRCGYC	1 cut(s)	650
Hin6I	GCGC	1 cut(s)	650
HinP1I	GCGC	1 cut(s)	650
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	2 cut(s)	81, 98
HphI	GGTGA	6 cut(s)	172, 207, 552, 651, 675, 857
Hpy188I	TCNGA	4 cut(s)	103, 313, 370, 382
Hpy188III	TCNNGA	4 cut(s)	155, 210, 226, 345
HpyAV	CCTTC	3 cut(s)	135, 161, 296
HpyCH4III	ACNGT	5 cut(s)	355, 466, 488, 712, 924
HpyCH4IV	ACGT	2 cut(s)	698, 910
HpyCH4V	TGCA	9 cut(s)	54, 241, 631, 703, 716, 770, 838, 915, 928
HpyF10VI	GCNNNNNNNGC	8 cut(s)	54, 60, 647, 700, 739, 894, 903, 912
HpyF3I	CTNAG	4 cut(s)	85, 156, 369, 786
HpySE526I	ACGT	2 cut(s)	698, 910
Hsp92I	GRCGYC	1 cut(s)	650
HspAI	GCGC	1 cut(s)	650
KasI	GGCGCC	1 cut(s)	649
Kzo9I	GATC	3 cut(s)	194, 212, 797
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	2 cut(s)	305, 817
LpnPI	CCDG	7 cut(s)	168, 223, 227, 531, 603, 690, 902
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	2 cut(s)	698, 910
MaeIII	GTNAC	4 cut(s)	65, 107, 320, 592
MalI	GATC	3 cut(s)	196, 214, 799
MboI	GATC	3 cut(s)	194, 212, 797
MboII	GAAGA	5 cut(s)	55, 198, 278, 398, 545
MfeI	CAATTG	1 cut(s)	264
MluCI	AATT	3 cut(s)	264, 326, 545
Mly113I	GGCGCC	1 cut(s)	650
MseI	TTAA	3 cut(s)	233, 273, 955
MunI	CAATTG	1 cut(s)	264
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	8 cut(s)	54, 60, 647, 700, 739, 894, 903, 912
NarI	GGCGCC	1 cut(s)	650
NdeII	GATC	3 cut(s)	194, 212, 797
NlaIV	GGNNCC	4 cut(s)	175, 307, 429, 651
PciSI	GCTCTTC	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	81, 98
PluTI	GGCGCC	1 cut(s)	653
PpuMI	RGGWCCY	1 cut(s)	427
PsiI	TTATAA	1 cut(s)	470
Psp5II	RGGWCCY	1 cut(s)	427
PspN4I	GGNNCC	4 cut(s)	175, 307, 429, 651
PspPI	GGNCC	1 cut(s)	427
PspPPI	RGGWCCY	1 cut(s)	427
PstI	CTGCAG	1 cut(s)	56
PstNI	CAGNNNCTG	1 cut(s)	486
RsaI	GTAC	1 cut(s)	893
RsaNI	GTAC	1 cut(s)	892
SapI	GCTCTTC	1 cut(s)	38
SaqAI	TTAA	3 cut(s)	233, 273, 955
Sau3AI	GATC	3 cut(s)	194, 212, 797
Sau96I	GGNCC	1 cut(s)	427
SfcI	CTRYAG	1 cut(s)	52
SfoI	GGCGCC	1 cut(s)	651
SinI	GGWCC	1 cut(s)	427
Sse9I	AATT	3 cut(s)	264, 326, 545
SsiI	CCGC	7 cut(s)	63, 647, 662, 731, 740, 895, 934
SspDI	GGCGCC	1 cut(s)	649
SspMI	CTAG	1 cut(s)	117
TaaI	ACNGT	5 cut(s)	355, 466, 488, 712, 924
TaiI	ACGT	2 cut(s)	701, 913
TaqI	TCGA	1 cut(s)	197
TasI	AATT	3 cut(s)	264, 326, 545
TauI	GCSGC	1 cut(s)	650
TfiI	GAWTC	2 cut(s)	81, 98
Tru1I	TTAA	3 cut(s)	233, 273, 955
Tru9I	TTAA	3 cut(s)	233, 273, 955
TscAI	CASTG	7 cut(s)	252, 360, 678, 696, 798, 890, 908
TspDTI	ATGAA	2 cut(s)	315, 351
TspRI	CASTG	7 cut(s)	252, 360, 678, 696, 798, 890, 908
VpaK11BI	GGWCC	1 cut(s)	427
XagI	CCTNNNNNAGG	1 cut(s)	155
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.