Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001973

Physical Location & Seq

Genomic Coordinates Forward (+)

4949919 .. 4951743

Gene Structure 1825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG057100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGACTATGAGCTGCTTTGGTCCATTGTTTCGTTGGAAGCCTCCTTCTCGACGCAAGGGAACGAAAGGCTCTAACCGGCCCAAGAGTCTTCCCTCGAAACAGAATGTCACCAAAAGCACACCAGCAGATGACTCTTATGGAGTTGCAGGAAATTCTGCTCTGACAATGGCGCTTAGGAAGACGATCGTGACCTTCAGGGATGTCATGGACCTGCCAACATGTAATGCTTCTTCACCCATAAATCAGCTGGTGATGGGGTTGATGCTTGATCTCCAAAAGCTCTACCCTGAAATTGTACGTCGTAGTCAATTATCAGAAATGAAGGGAGCATCTACAGAAAAGATCCTGGCCTCCTTCTGCAATGCACTGAAATCTATTGGAGATTCATGGATGACAAACCATGACAGGTTGGACAAACTGAGATATGATATGCCATCATTCAAAGAGAATGCCAATTGGGACCAACACGTTGGAACCGTGTTGGCAACACTTGAGTGCTTGATTAAGATGGCAAGGGACAAGTTTGATATGATGGACGAGGATGAGCAGAAGAGCAACTGCAGCCCTCGCGGTAACTCATTTGGGAGATTCTTAGGCGACACCGATTCAGAGAGTTACACCTCTAGCTGCCCTTCTCCAATCACACCATCCTCTGTCCTTCCTGAGGTGATAGATAGTGGTTCCCCCAAATCTCAAAGGAGATCGAAAGCTTCTTCCAGATCACCCGTTCTCTTGACTTTAAGAGTGCAGGCAGTAGGGAAACTCAACCCAATTGATGTTAAGCATTTGTCTCTTCACTTATCAAATGAAGGAGCCTCTAATAAAAGTAACAAATTGGTTGATGAACCATCAAGAGAGACAGTCGAAAGCAGCTCCGAGAAGTCATCAGAGGAAGAAAACAGATGTAGCAGCACAAGAGAGGACACAGCAGAGCCCCTGAATCTTTGGCAGAAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231

Pfam Domains

Protein Families

No domains found.

Protein Analysis

319

Amino Acids

35.39

Weight (kDa)

8.75

Isoelectric Point (pI)

63.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11070 AT1G11070 AT1G11070 AT1G11070 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT4G04980 AT4G04980 AT4G04980
malus_domestica	MD05G1320300.v1.1 MD05G1320400.v1.1 MD05G1320600.v1.1 MD05G1320700.v1.1 MD05G1320900.v1.1 MD10G1299500.v1.1
prunus_persica	Prupe.4G041300_v2.0.a1 Prupe.4G041300_v2.0.a1
pyrus_communis	pycom05g29550 pycom05g29570
rosa_chinensis	RchiOBHm_Chr5g0007591 RchiOBHm_Chr5g0007601 RchiOBHm_Chr5g0021911 RchiOBHm_Chr7g0235111
rosa_laevigata	RLG00000013181 RLG00000031475
rosa_multiflora	Rmu_sc0015365.1_g000002 Rmu_sc0042291.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068760 Rroxscaffold_1G00068770 Rroxscaffold_4G00304220
rosa_rugosa	Rorug04G0429100
rosa_samantha	Rh4DG240000 Rh5AG057100 Rh5AG057200 Rh5BG054200 Rh5CG064000 Rh5CG064100 Rh5DG053300 Rh6BG518400 Rh6CG523900
rosa_wichuraiana	Rw5G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	219
AccII	CGCG	1 cut(s)	570
AciI	CCGC	1 cut(s)	570
AclWI	GGATC	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	178
AfaI	GTAC	1 cut(s)	297
AfiI	CCNNNNNNNGG	1 cut(s)	664
AflIII	ACRYGT	2 cut(s)	218, 466
AgsI	TTSAA	1 cut(s)	442
AjnI	CCWGG	1 cut(s)	345
AleI	CACNNNNGTG	1 cut(s)	493
AluBI	AGCT	6 cut(s)	12, 247, 280, 627, 710, 873
AluI	AGCT	6 cut(s)	12, 247, 280, 627, 710, 873
Alw26I	GTCTC	2 cut(s)	795, 851
AlwI	GGATC	1 cut(s)	337
AoxI	GGCC	2 cut(s)	77, 348
ApeKI	GCWGC	5 cut(s)	12, 561, 627, 870, 909
ApoI	RAATTY	1 cut(s)	151
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	4 cut(s)	20, 78, 208, 460
AsuHPI	GGTGA	5 cut(s)	100, 225, 262, 679, 714
AvaII	GGWCC	3 cut(s)	20, 208, 460
AxyI	CCTNAGG	1 cut(s)	663
BanII	GRGCYC	1 cut(s)	936
BarI	GAAGNNNNNNTAC	2 cut(s)	214, 246
BbsI	GAAGAC	2 cut(s)	80, 185
BbvI	GCAGC	4 cut(s)	573, 614, 882, 921
BccI	CCATC	6 cut(s)	247, 442, 502, 526, 655, 856
BciT130I	CCWGG	1 cut(s)	347
BcoDI	GTCTC	2 cut(s)	795, 851
BfaI	CTAG	1 cut(s)	624
BfmI	CTRYAG	2 cut(s)	333, 559
BfoI	RGCGCY	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	219
BisI	GCNGC	5 cut(s)	13, 562, 628, 871, 910
BlsI	GCNGC	5 cut(s)	14, 563, 629, 872, 911
Bme1390I	CCNGG	1 cut(s)	347
Bme18I	GGWCC	3 cut(s)	20, 208, 460
BmgT120I	GGNCC	4 cut(s)	20, 78, 208, 460
BmiI	GGNNCC	4 cut(s)	461, 475, 682, 814
BmrFI	CCNGG	1 cut(s)	347
BmsI	GCATC	2 cut(s)	252, 338
BpiI	GAAGAC	2 cut(s)	80, 185
Bpu10I	CCTNAGC	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	1 cut(s)	664
Bse118I	RCCGGY	1 cut(s)	75
Bse21I	CCTNAGG	1 cut(s)	663
Bse3DI	GCAATG	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	347
BseGI	GGATG	4 cut(s)	205, 396, 547, 647
BseLI	CCNNNNNNNGG	1 cut(s)	664
BseMI	GCAATG	1 cut(s)	367
BseMII	CTCAG	2 cut(s)	410, 654
BseXI	GCAGC	4 cut(s)	573, 614, 882, 921
BsgI	GTGCAG	1 cut(s)	767
Bsh1236I	CGCG	1 cut(s)	570
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	79, 350
BsiEI	CGRYCG	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	76
BslFI	GGGAC	2 cut(s)	473, 530
BslI	CCNNNNNNNGG	1 cut(s)	664
BsmAI	GTCTC	2 cut(s)	795, 851
BsmFI	GGGAC	2 cut(s)	473, 530
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	2 cut(s)	79, 350
Bsp1286I	GDGCHC	1 cut(s)	936
Bsp143I	GATC	5 cut(s)	183, 268, 342, 701, 719
BspACI	CCGC	1 cut(s)	570
BspANI	GGCC	2 cut(s)	79, 350
BspCNI	CTCAG	2 cut(s)	411, 655
BspFNI	CGCG	1 cut(s)	570
BspLI	GGNNCC	4 cut(s)	461, 475, 682, 814
BspMAI	CTGCAG	1 cut(s)	563
BspMI	ACCTGC	1 cut(s)	219
BspPI	GGATC	1 cut(s)	337
BspQI	GCTCTTC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	367
BsrFI	RCCGGY	1 cut(s)	75
BssAI	RCCGGY	1 cut(s)	75
BssMI	GATC	5 cut(s)	183, 268, 342, 701, 719
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	2 cut(s)	478, 862
Bst6I	CTCTTC	2 cut(s)	545, 798
BstC8I	GCNNGC	1 cut(s)	750
BstDEI	CTNAG	4 cut(s)	173, 419, 592, 663
BstENI	CCTNNNNNAGG	1 cut(s)	662
BstF5I	GGATG	4 cut(s)	205, 396, 547, 647
BstFNI	CGCG	1 cut(s)	570
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	5 cut(s)	186, 271, 345, 704, 722
BstMAI	GTCTC	2 cut(s)	795, 851
BstMBI	GATC	5 cut(s)	183, 268, 342, 701, 719
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	2 cut(s)	561, 567
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	345
BstSFI	CTRYAG	2 cut(s)	333, 559
BstUI	CGCG	1 cut(s)	570
BstV1I	GCAGC	4 cut(s)	573, 614, 882, 921
BstV2I	GAAGAC	2 cut(s)	80, 185
BstX2I	RGATCY	1 cut(s)	342
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	342
Bsu36I	CCTNAGG	1 cut(s)	663
BsuRI	GGCC	2 cut(s)	79, 350
BtsCI	GGATG	4 cut(s)	205, 396, 547, 647
BtsIMutI	CAGTG	1 cut(s)	365
BveI	ACCTGC	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	750
CfoI	GCGC	1 cut(s)	172
Cfr10I	RCCGGY	1 cut(s)	75
Cfr13I	GGNCC	4 cut(s)	20, 78, 208, 460
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	296
CviAII	CATG	4 cut(s)	205, 219, 387, 401
CviQI	GTAC	1 cut(s)	296
DdeI	CTNAG	4 cut(s)	173, 419, 592, 663
DpnI	GATC	5 cut(s)	185, 270, 344, 703, 721
DpnII	GATC	5 cut(s)	183, 268, 342, 701, 719
Eam1104I	CTCTTC	2 cut(s)	545, 798
EarI	CTCTTC	2 cut(s)	545, 798
Eco24I	GRGCYC	1 cut(s)	936
Eco47I	GGWCC	3 cut(s)	20, 208, 460
Eco57I	CTGAAG	1 cut(s)	178
Eco81I	CCTNAGG	1 cut(s)	663
EcoNI	CCTNNNNNAGG	1 cut(s)	662
EcoRII	CCWGG	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	936
FaeI	CATG	4 cut(s)	208, 222, 390, 404
FaqI	GGGAC	2 cut(s)	473, 530
FatI	CATG	4 cut(s)	204, 218, 386, 400
Fnu4HI	GCNGC	5 cut(s)	13, 562, 628, 871, 910
FokI	GGATG	4 cut(s)	212, 403, 554, 634
FriOI	GRGCYC	1 cut(s)	936
Fsp4HI	GCNGC	5 cut(s)	13, 562, 628, 871, 910
FspBI	CTAG	1 cut(s)	624
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	5 cut(s)	13, 562, 628, 871, 910
HaeII	RGCGCY	1 cut(s)	173
HaeIII	GGCC	2 cut(s)	79, 350
HapII	CCGG	1 cut(s)	76
HgaI	GACGC	1 cut(s)	60
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	4 cut(s)	208, 222, 390, 404
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HindIII	AAGCTT	1 cut(s)	708
HinfI	GANTC	6 cut(s)	85, 131, 383, 588, 605, 940
HpaII	CCGG	1 cut(s)	76
HphI	GGTGA	5 cut(s)	100, 225, 262, 679, 714
Hpy188I	TCNGA	5 cut(s)	162, 316, 610, 877, 889
Hpy188III	TCNNGA	6 cut(s)	48, 187, 662, 717, 733, 852
Hpy99I	CGWCG	2 cut(s)	54, 303
HpyAV	CCTTC	7 cut(s)	54, 202, 316, 364, 642, 668, 803
HpyCH4III	ACNGT	2 cut(s)	478, 862
HpyCH4IV	ACGT	2 cut(s)	298, 468
HpyCH4V	TGCA	5 cut(s)	146, 360, 365, 561, 748
HpyF10VI	GCNNNNNNNGC	2 cut(s)	561, 567
HpyF3I	CTNAG	4 cut(s)	173, 419, 592, 663
HpySE526I	ACGT	2 cut(s)	298, 468
Hsp92II	CATG	4 cut(s)	208, 222, 390, 404
HspAI	GCGC	1 cut(s)	170
Kzo9I	GATC	5 cut(s)	183, 268, 342, 701, 719
LguI	GCTCTTC	1 cut(s)	545
LmnI	GCTCC	3 cut(s)	326, 812, 878
Lsp1109I	GCAGC	4 cut(s)	573, 614, 882, 921
LweI	GCATC	2 cut(s)	252, 338
MaeI	CTAG	1 cut(s)	624
MaeII	ACGT	2 cut(s)	298, 468
MaeIII	GTNAC	5 cut(s)	106, 187, 572, 614, 827
MalI	GATC	5 cut(s)	185, 270, 344, 703, 721
MboI	GATC	5 cut(s)	183, 268, 342, 701, 719
MboII	GAAGA	7 cut(s)	80, 190, 222, 562, 705, 785, 905
MfeI	CAATTG	2 cut(s)	454, 771
MflI	RGATCY	1 cut(s)	342
MhlI	GDGCHC	1 cut(s)	936
MluCI	AATT	6 cut(s)	151, 291, 308, 454, 771, 833
MlyI	GAGTC	2 cut(s)	94, 125
MmeI	TCCRAC	3 cut(s)	14, 390, 451
MseI	TTAA	3 cut(s)	504, 740, 780
MslI	CAYNNNNRTG	1 cut(s)	493
MspA1I	CMGCKG	1 cut(s)	247
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	347
MunI	CAATTG	2 cut(s)	454, 771
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	1 cut(s)	570
MwoI	GCNNNNNNNGC	2 cut(s)	561, 567
NdeII	GATC	5 cut(s)	183, 268, 342, 701, 719
NlaIII	CATG	4 cut(s)	208, 222, 390, 404
NlaIV	GGNNCC	4 cut(s)	461, 475, 682, 814
NmuCI	GTSAC	2 cut(s)	106, 187
NspI	RCATGY	1 cut(s)	222
OliI	CACNNNNGTG	1 cut(s)	493
PciI	ACATGT	1 cut(s)	218
PciSI	GCTCTTC	1 cut(s)	545
PcsI	WCGNNNNNNNCGW	1 cut(s)	474
PctI	GAATGC	1 cut(s)	454
PfeI	GAWTC	4 cut(s)	383, 588, 605, 940
PkrI	GCNGC	5 cut(s)	14, 563, 629, 872, 911
Ple19I	CGATCG	1 cut(s)	186
PleI	GAGTC	2 cut(s)	93, 125
PpsI	GAGTC	2 cut(s)	93, 125
PscI	ACATGT	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	4 cut(s)	461, 475, 682, 814
PspPI	GGNCC	4 cut(s)	20, 78, 208, 460
PstI	CTGCAG	1 cut(s)	563
PsuI	RGATCY	1 cut(s)	342
PvuI	CGATCG	1 cut(s)	186
PvuII	CAGCTG	1 cut(s)	247
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
RseI	CAYNNNNRTG	1 cut(s)	493
SapI	GCTCTTC	1 cut(s)	545
SaqAI	TTAA	3 cut(s)	504, 740, 780
SatI	GCNGC	5 cut(s)	13, 562, 628, 871, 910
Sau3AI	GATC	5 cut(s)	183, 268, 342, 701, 719
Sau96I	GGNCC	4 cut(s)	20, 78, 208, 460
SchI	GAGTC	2 cut(s)	94, 125
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	936
SfaNI	GCATC	2 cut(s)	252, 338
SfcI	CTRYAG	2 cut(s)	333, 559
SinI	GGWCC	3 cut(s)	20, 208, 460
SmiMI	CAYNNNNRTG	1 cut(s)	493
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	6 cut(s)	151, 291, 308, 454, 771, 833
SsiI	CCGC	1 cut(s)	570
SspMI	CTAG	1 cut(s)	624
StyD4I	CCNGG	1 cut(s)	345
TaaI	ACNGT	2 cut(s)	478, 862
TaiI	ACGT	2 cut(s)	301, 471
TaqI	TCGA	4 cut(s)	49, 95, 704, 864
TasI	AATT	6 cut(s)	151, 291, 308, 454, 771, 833
TfiI	GAWTC	4 cut(s)	383, 588, 605, 940
Tru1I	TTAA	3 cut(s)	504, 740, 780
Tru9I	TTAA	3 cut(s)	504, 740, 780
TscAI	CASTG	1 cut(s)	372
TseFI	GTSAC	2 cut(s)	106, 187
TseI	GCWGC	5 cut(s)	12, 561, 627, 870, 909
Tsp45I	GTSAC	2 cut(s)	106, 187
TspDTI	ATGAA	4 cut(s)	335, 375, 822, 858
TspRI	CASTG	1 cut(s)	372
VpaK11BI	GGWCC	3 cut(s)	20, 208, 460
XagI	CCTNNNNNAGG	1 cut(s)	662
XapI	RAATTY	1 cut(s)	151
XceI	RCATGY	1 cut(s)	222
XcmI	CCANNNNNNNNNTGG	2 cut(s)	30, 244
XspI	CTAG	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.