Rroxscaffold_1G00068760

At4g04980-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
89839428 .. 89841938
2511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00068760.1

Sequence Viewer

Length: 2118 bp
ATGGCAAGGGACAAGTTTGATATGATGGACGAGGATGAGCAGAAGAGCAACTGCAGCCCTCGCGGTAACTCATTTGGGAGATTCTTAGGCGACACCGATTCAGAGAGTTACACCTCTAGCTGCCCTTCTCCAATCACACCATCCTCTGTCCTTCCTGAGGTGATAGATAGTGGTTCCCCCAAACCTCAAAGGAGATCGAAAGCTTCTTCCAGATCACCCGTTCTCTTGACTTTAAGAGTGCAGGCGGTGGGGAAGCTCAACCCAATTGATGTTAAGCATTTGTCTCTTCACTTATCAAATGAAGGAGCCTCTGATAAAAGTAACAAATTGGTTGATGAACCATCAAGAGAGACAGTGGAAAGCAGCTCCGAGAAGTCATCAGAGGAAGAAAACAGATGTAGCAGCACAAGAGAGGACACAGCAGAGGTCCCAAATCCAAGTTTGAATGAGAATGATAGCAGAACTGTTATAATAGACAACAGAAACTGTGATGATGTTGGCATTTCAACCACAGCCCCTGAAACTTTGGCAGTAGATATAACAGAATTGCCTCCACCCTCACCACCACCAAATCTCACAACAACAATACCTGTAACTCCACCACCACCACCATCACTACCCACATTGCAGCCAAAGGCTGCTGCGGCGCCTCCCTCACCGCCACCACCACCAACACTGCCTGTATCACCATCACTGCCCACGTTGCAGCCAACTGTTGCAGCACTACCACCCCCGCCCCCACCACCACCACCAACATTAGCACCACTAAATGCAGCACCTGCTAGGCGGCCAGCACCACCGCCACCTAAGGCACTGCGATCAACAAAAGCTGCTCCACCACCATCACTACCCACATTGCAGCCAAAGGATTCTGCGACACCCCCTTCACCGCAACTACCACCAACACTGCCTGTACCGCCATCACTGCCCACGTTGCAGCCAACTGTTGCAGCACCGCCACCGCCACCGCCACCACCAACATTAACACCACTATATGCAGCACCTGCTAGGCAGTCACTGCCACCTCCACCTAAGGTACTGGGATCAACAAAAGCTGCTCCACCACCGCCACCACCTCTGCCCATGGCACCAGGATCAACAGCAGCAGGTCCACCAACCCCACTACCGATGCCAGTTGCAACTGCATCTGCTCCACCACCCCCACCACCCATGGGGAGGCCTGCAAATGGAGCTGCTCCACCCCCACCTCCTGCACTTGGTGGAAGATCCTTACTTATGAAGAAATCAAATACTAAATTGAAGAGATCATCCCAAATGGGAAGTCTGTATCGGACTCTCAAGGGGAAGGTGGAAGGATCAAGCTTGAATGGTAAATCATCCAATGGGAGAAAGGGTGGAGCAGCTGGGAGCAGCGCAGCAGGTGGTAAAGGAATGGCTGATGCTCTAGCAGAGATGACAAAGAGATCAGCATACTTTCAACAAATTGAAGAAGATGTTCAGAAATATTCAAAGGCTATAATAAATATGAGAACTACCCTGAGTTCTTTCCAAACAAAAGACATGAATGAGCTGTTAGAGTTCCACAAGAAAGTAGAAACCATTCTTGAAAACTTGACTGACGAGACACAGGTTTTATCAAGGTTTGAAGGATTCCCTACAAAAAAGTTAGAAACAATAAGGGCAGCAGTAGCACTCCACTCACAGCTAAATGCAATGATCACTGAACTACACAATTGGAAAATAGAGGCTCCCCTAGGTCCGCTCCTTGACAAGATTGAACGTTATTTCACCAAGATCAAAGGAGAAATAGATAAACTGGAGCGAACAAAAGATGAAGAAATTAAGAAATTTAAGAGTCAAAATATCCACTTTGATTTCAATATCCTCATCCGGATAAAAGAAGCAATGGTAGATATTTCCTCAGGCTGCATGGAGCTAGCACTAAAGGAAAGAAGAGAAGCAAAGGCCAGTGGAGAGGCACAAACTACTGGAACCAAAACTGATAAAAAGCAATTAAAGATATGCATTAAAATGCTGTGGAGGGCTTTTCAATTTGCCTTCAAGGTCTATACCTTTGCCGGTGGACACGATGATCGTGCCGACATGCTCACAAGAGAACTAGCTACTGAAATTGAGTCTGATCCCTACCAGCACTGA

Protein Analysis

705

Amino Acids

75.51

Weight (kDa)

8.98

Isoelectric Point (pI)

70.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 470
AarI CACCTGC 3 cut(s) 787, 1012, 1370
Acc36I ACCTGC 4 cut(s) 787, 1012, 1097, 1370
AccB1I GGYRCC 2 cut(s) 646, 1087
AccBSI CCGCTC 1 cut(s) 1723
AccII CGCG 1 cut(s) 63
AccIII TCCGGA 1 cut(s) 1851
AclI AACGTT 1 cut(s) 1741
AclWI GGATC 5 cut(s) 1051, 1102, 1221, 1324, 2096
AcoI YGGCCR 1 cut(s) 788
AcsI RAATTY 1 cut(s) 1808
AcyI GRCGYC 1 cut(s) 647
AdeI CACNNNGTG 1 cut(s) 1220
AfaI GTAC 2 cut(s) 915, 1038
AfiI CCNNNNNNNGG 5 cut(s) 157, 1172, 1176, 1187, 1217
AjnI CCWGG 1 cut(s) 1090
Alw26I GTCTC 3 cut(s) 288, 344, 1577
AlwI GGATC 5 cut(s) 1051, 1102, 1221, 1324, 2096
AlwNI CAGNNNCTG 5 cut(s) 486, 518, 779, 1004, 1018
Aor13HI TCCGGA 1 cut(s) 1851
AoxI GGCC 3 cut(s) 788, 1178, 1926
ApoI RAATTY 1 cut(s) 1808
ArsI GACNNNNNNTTYG 2 cut(s) 1267, 1299
Asp700I GAANNNNTTC 2 cut(s) 1455, 1560
AspA2I CCTAGG 1 cut(s) 1714
AspLEI GCGC 2 cut(s) 649, 1376
AspS9I GGNCC 3 cut(s) 427, 1109, 1718
AsuHPI GGTGA 7 cut(s) 172, 207, 552, 648, 678, 879, 1741
AsuNHI GCTAGC 1 cut(s) 1897
AvaII GGWCC 3 cut(s) 427, 1109, 1718
AvrII CCTAGG 1 cut(s) 1714
AxyI CCTNAGG 4 cut(s) 156, 807, 1032, 1882
BanI GGYRCC 2 cut(s) 646, 1087
BccI CCATC 7 cut(s) 19, 148, 349, 619, 697, 850, 928
BcgI CGANNNNNNTGC 2 cut(s) 2039, 2073
BciT130I CCWGG 1 cut(s) 1092
BclI TGATCA 1 cut(s) 1677
BcoDI GTCTC 3 cut(s) 288, 344, 1577
BfaI CTAG 7 cut(s) 117, 783, 1008, 1406, 1715, 1898, 2081
BfmI CTRYAG 1 cut(s) 52
BfoI RGCGCY 1 cut(s) 650
BfuAI ACCTGC 4 cut(s) 787, 1012, 1097, 1370
BlnI CCTAGG 1 cut(s) 1714
Bme1390I CCNGG 1 cut(s) 1092
Bme18I GGWCC 3 cut(s) 427, 1109, 1718
BmgT120I GGNCC 3 cut(s) 427, 1109, 1718
BmiI GGNNCC 7 cut(s) 175, 307, 429, 648, 1089, 1710, 1954
BmrFI CCNGG 1 cut(s) 1092
BmrI ACTGGG 1 cut(s) 1049
BmsI GCATC 3 cut(s) 1119, 1154, 1390
BmtI GCTAGC 1 cut(s) 1901
BmuI ACTGGG 1 cut(s) 1049
BpmI CTGGAG 1 cut(s) 1799
BpuEI CTTGAG 1 cut(s) 1283
BsaHI GRCGYC 1 cut(s) 647
BsaJI CCNNGG 3 cut(s) 1083, 1170, 1714
BsaWI WCCGGW 1 cut(s) 1851
BsaXI ACNNNNNCTCC 2 cut(s) 1339, 1369
Bsc4I CCNNNNNNNGG 5 cut(s) 157, 1172, 1176, 1187, 1217
Bse118I RCCGGY 1 cut(s) 2039
Bse1I ACTGG 5 cut(s) 1044, 1133, 1782, 1929, 1954
Bse21I CCTNAGG 4 cut(s) 156, 807, 1032, 1882
Bse3DI GCAATG 4 cut(s) 623, 854, 1680, 1872
BseAI TCCGGA 1 cut(s) 1851
BseBI CCWGG 1 cut(s) 1092
BseDI CCNNGG 3 cut(s) 1083, 1170, 1714
BseGI GGATG 5 cut(s) 40, 140, 1268, 1337, 1848
BseLI CCNNNNNNNGG 5 cut(s) 157, 1172, 1176, 1187, 1217
BseMI GCAATG 4 cut(s) 623, 854, 1680, 1872
BseMII CTCAG 3 cut(s) 147, 1490, 1896
BseNI ACTGG 5 cut(s) 1044, 1133, 1782, 1929, 1954
BseYI CCCAGC 1 cut(s) 1364
BsgI GTGCAG 2 cut(s) 260, 1197
Bsh1236I CGCG 1 cut(s) 63
BshFI GGCC 3 cut(s) 790, 1180, 1928
BshNI GGYRCC 2 cut(s) 646, 1087
BsiSI CCGG 2 cut(s) 1852, 2040
BslFI GGGAC 2 cut(s) 23, 413
BslI CCNNNNNNNGG 5 cut(s) 157, 1172, 1176, 1187, 1217
BsmAI GTCTC 3 cut(s) 288, 344, 1577
BsmFI GGGAC 2 cut(s) 23, 413
BsnI GGCC 3 cut(s) 790, 1180, 1928
Bsp13I TCCGGA 1 cut(s) 1851
Bsp19I CCATGG 2 cut(s) 1083, 1170
BspANI GGCC 3 cut(s) 790, 1180, 1928
BspCNI CTCAG 3 cut(s) 148, 1491, 1895
BspEI TCCGGA 1 cut(s) 1851
BspFNI CGCG 1 cut(s) 63
BspLI GGNNCC 7 cut(s) 175, 307, 429, 648, 1089, 1710, 1954
BspMAI CTGCAG 1 cut(s) 56
BspMI ACCTGC 4 cut(s) 787, 1012, 1097, 1370
BspOI GCTAGC 1 cut(s) 1901
BspPI GGATC 5 cut(s) 1051, 1102, 1221, 1324, 2096
BspQI GCTCTTC 1 cut(s) 38
BspT107I GGYRCC 2 cut(s) 646, 1087
BsrBI CCGCTC 1 cut(s) 1723
BsrDI GCAATG 4 cut(s) 623, 854, 1680, 1872
BsrFI RCCGGY 1 cut(s) 2039
BsrI ACTGG 5 cut(s) 1044, 1133, 1782, 1929, 1954
BssAI RCCGGY 1 cut(s) 2039
BssECI CCNNGG 3 cut(s) 1083, 1170, 1714
BssNI GRCGYC 1 cut(s) 647
BssT1I CCWWGG 3 cut(s) 1083, 1170, 1714
Bst2UI CCWGG 1 cut(s) 1092
Bst4CI ACNGT 5 cut(s) 355, 466, 488, 715, 946
Bst6I CTCTTC 4 cut(s) 38, 291, 1256, 1909
BstACI GRCGYC 1 cut(s) 647
BstAPI GCANNNNNTGC 3 cut(s) 779, 1004, 1018
BstC8I GCNNGC 4 cut(s) 243, 792, 1182, 1899
BstDEI CTNAG 6 cut(s) 85, 156, 807, 1032, 1499, 1882
BstDSI CCRYGG 2 cut(s) 1083, 1170
BstENI CCTNNNNNAGG 1 cut(s) 155
BstF5I GGATG 5 cut(s) 40, 140, 1268, 1337, 1848
BstFNI CGCG 1 cut(s) 63
BstH2I RGCGCY 1 cut(s) 650
BstHHI GCGC 2 cut(s) 649, 1376
BstMAI GTCTC 3 cut(s) 288, 344, 1577
BstNI CCWGG 1 cut(s) 1092
BstNSI RCATGY 1 cut(s) 2068
BstSCI CCNGG 1 cut(s) 1090
BstSFI CTRYAG 1 cut(s) 52
BstUI CGCG 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 1226
BstYI RGATCY 1 cut(s) 1226
Bsu36I CCTNAGG 4 cut(s) 156, 807, 1032, 1882
BsuRI GGCC 3 cut(s) 790, 1180, 1928
BtgI CCRYGG 2 cut(s) 1083, 1170
BtsCI GGATG 5 cut(s) 40, 140, 1268, 1337, 1848
BtsI GCAGTG 6 cut(s) 674, 692, 812, 905, 923, 1016
BveI ACCTGC 4 cut(s) 787, 1012, 1097, 1370
Cac8I GCNNGC 4 cut(s) 243, 792, 1182, 1899
CaiI CAGNNNCTG 5 cut(s) 486, 518, 779, 1004, 1018
CfoI GCGC 2 cut(s) 649, 1376
Cfr10I RCCGGY 1 cut(s) 2039
Cfr13I GGNCC 3 cut(s) 427, 1109, 1718
Csp6I GTAC 2 cut(s) 914, 1037
CviAII CATG 5 cut(s) 1084, 1171, 1522, 1891, 2065
CviQI GTAC 2 cut(s) 914, 1037
DdeI CTNAG 6 cut(s) 85, 156, 807, 1032, 1499, 1882
DinI GGCGCC 1 cut(s) 648
DraIII CACNNNGTG 1 cut(s) 1220
EaeI YGGCCR 1 cut(s) 788
Eam1104I CTCTTC 4 cut(s) 38, 291, 1256, 1909
EarI CTCTTC 4 cut(s) 38, 291, 1256, 1909
Eco130I CCWWGG 3 cut(s) 1083, 1170, 1714
Eco147I AGGCCT 1 cut(s) 1180
Eco47I GGWCC 3 cut(s) 427, 1109, 1718
Eco81I CCTNAGG 4 cut(s) 156, 807, 1032, 1882
EcoNI CCTNNNNNAGG 1 cut(s) 155
EcoO109I RGGNCCY 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 1090
EcoT14I CCWWGG 3 cut(s) 1083, 1170, 1714
EcoT22I ATGCAT 1 cut(s) 1988
EgeI GGCGCC 1 cut(s) 648
EheI GGCGCC 1 cut(s) 648
ErhI CCWWGG 3 cut(s) 1083, 1170, 1714
FaeI CATG 5 cut(s) 1087, 1174, 1525, 1894, 2068
FaqI GGGAC 2 cut(s) 23, 413
FatI CATG 5 cut(s) 1083, 1170, 1521, 1890, 2064
FauI CCCGC 1 cut(s) 741
FbaI TGATCA 1 cut(s) 1677
FokI GGATG 5 cut(s) 47, 127, 1255, 1324, 1835
FspBI CTAG 7 cut(s) 117, 783, 1008, 1406, 1715, 1898, 2081
GlaI GCGC 2 cut(s) 648, 1375
GsaI CCCAGC 1 cut(s) 1368
GsuI CTGGAG 1 cut(s) 1799
HaeII RGCGCY 1 cut(s) 650
HaeIII GGCC 3 cut(s) 790, 1180, 1928
HapII CCGG 2 cut(s) 1852, 2040
HhaI GCGC 2 cut(s) 649, 1376
Hin1I GRCGYC 1 cut(s) 647
Hin1II CATG 5 cut(s) 1087, 1174, 1525, 1894, 2068
Hin6I GCGC 2 cut(s) 647, 1374
HinP1I GCGC 2 cut(s) 647, 1374
HindIII AAGCTT 2 cut(s) 201, 1321
HinfI GANTC 7 cut(s) 81, 98, 869, 1294, 1611, 1816, 2096
HpaII CCGG 2 cut(s) 1852, 2040
HphI GGTGA 7 cut(s) 172, 207, 552, 648, 678, 879, 1741
Hpy166II GTNNAC 2 cut(s) 1112, 2045
Hpy188I TCNGA 7 cut(s) 103, 313, 370, 382, 1293, 1461, 2101
Hpy188III TCNNGA 6 cut(s) 155, 210, 226, 345, 1565, 1852
Hpy8I GTNNAC 2 cut(s) 1112, 2045
HpyAV CCTTC 8 cut(s) 135, 161, 296, 894, 1300, 1307, 1601, 2029
HpyCH4III ACNGT 5 cut(s) 355, 466, 488, 715, 946
HpyCH4IV ACGT 3 cut(s) 701, 932, 1741
HpyF3I CTNAG 6 cut(s) 85, 156, 807, 1032, 1499, 1882
HpySE526I ACGT 3 cut(s) 701, 932, 1741
Hsp92I GRCGYC 1 cut(s) 647
Hsp92II CATG 5 cut(s) 1087, 1174, 1525, 1894, 2068
HspAI GCGC 2 cut(s) 647, 1374
KasI GGCGCC 1 cut(s) 646
Kpn2I TCCGGA 1 cut(s) 1851
Ksp22I TGATCA 1 cut(s) 1677
LguI GCTCTTC 1 cut(s) 38
LweI GCATC 3 cut(s) 1119, 1154, 1390
MaeI CTAG 7 cut(s) 117, 783, 1008, 1406, 1715, 1898, 2081
MaeII ACGT 3 cut(s) 701, 932, 1741
MaeIII GTNAC 5 cut(s) 65, 107, 320, 592, 1014
MbiI CCGCTC 1 cut(s) 1723
MfeI CAATTG 2 cut(s) 264, 1693
MflI RGATCY 1 cut(s) 1226
Mly113I GGCGCC 1 cut(s) 647
MlyI GAGTC 3 cut(s) 1288, 1825, 2105
Mph1103I ATGCAT 1 cut(s) 1988
MroI TCCGGA 1 cut(s) 1851
MroXI GAANNNNTTC 2 cut(s) 1455, 1560
MseI TTAA 7 cut(s) 233, 273, 983, 1803, 1812, 1976, 1989
MslI CAYNNNNRTG 1 cut(s) 1991
MspA1I CMGCKG 1 cut(s) 1364
MspI CCGG 2 cut(s) 1852, 2040
MspR9I CCNGG 1 cut(s) 1092
MunI CAATTG 2 cut(s) 264, 1693
MvaI CCWGG 1 cut(s) 1092
MvnI CGCG 1 cut(s) 63
NarI GGCGCC 1 cut(s) 647
NcoI CCATGG 2 cut(s) 1083, 1170
NheI GCTAGC 1 cut(s) 1897
NlaIII CATG 5 cut(s) 1087, 1174, 1525, 1894, 2068
NlaIV GGNNCC 7 cut(s) 175, 307, 429, 648, 1089, 1710, 1954
NmuCI GTSAC 1 cut(s) 1014
NsiI ATGCAT 1 cut(s) 1988
NspI RCATGY 1 cut(s) 2068
PaqCI CACCTGC 3 cut(s) 787, 1012, 1370
PceI AGGCCT 1 cut(s) 1180
PciSI GCTCTTC 1 cut(s) 38
PdmI GAANNNNTTC 2 cut(s) 1455, 1560
PfeI GAWTC 4 cut(s) 81, 98, 869, 1611
PleI GAGTC 3 cut(s) 1288, 1824, 2104
PluTI GGCGCC 1 cut(s) 650
PpsI GAGTC 3 cut(s) 1288, 1824, 2104
PpuMI RGGWCCY 1 cut(s) 427
PsiI TTATAA 1 cut(s) 470
Psp1406I AACGTT 1 cut(s) 1741
Psp5II RGGWCCY 1 cut(s) 427
Psp6I CCWGG 1 cut(s) 1090
PspFI CCCAGC 1 cut(s) 1364
PspGI CCWGG 1 cut(s) 1090
PspN4I GGNNCC 7 cut(s) 175, 307, 429, 648, 1089, 1710, 1954
PspPI GGNCC 3 cut(s) 427, 1109, 1718
PspPPI RGGWCCY 1 cut(s) 427
PstI CTGCAG 1 cut(s) 56
PstNI CAGNNNCTG 5 cut(s) 486, 518, 779, 1004, 1018
PsuI RGATCY 1 cut(s) 1226
PvuII CAGCTG 1 cut(s) 1364
RsaI GTAC 2 cut(s) 915, 1038
RsaNI GTAC 2 cut(s) 914, 1037
RseI CAYNNNNRTG 1 cut(s) 1991
SapI GCTCTTC 1 cut(s) 38
SaqAI TTAA 7 cut(s) 233, 273, 983, 1803, 1812, 1976, 1989
Sau96I GGNCC 3 cut(s) 427, 1109, 1718
SchI GAGTC 3 cut(s) 1288, 1825, 2105
ScrFI CCNGG 1 cut(s) 1092
SfaNI GCATC 3 cut(s) 1119, 1154, 1390
SfcI CTRYAG 1 cut(s) 52
SfoI GGCGCC 1 cut(s) 648
SinI GGWCC 3 cut(s) 427, 1109, 1718
SmiMI CAYNNNNRTG 1 cut(s) 1991
SmlI CTYRAG 1 cut(s) 1298
SmoI CTYRAG 1 cut(s) 1298
SseBI AGGCCT 1 cut(s) 1180
SspDI GGCGCC 1 cut(s) 646
SspI AATATT 1 cut(s) 1466
SspMI CTAG 7 cut(s) 117, 783, 1008, 1406, 1715, 1898, 2081
StuI AGGCCT 1 cut(s) 1180
StyD4I CCNGG 1 cut(s) 1090
StyI CCWWGG 3 cut(s) 1083, 1170, 1714
TaaI ACNGT 5 cut(s) 355, 466, 488, 715, 946
TaiI ACGT 3 cut(s) 704, 935, 1744
TaqI TCGA 1 cut(s) 197
TauI GCSGC 2 cut(s) 647, 790
TfiI GAWTC 4 cut(s) 81, 98, 869, 1611
Tru1I TTAA 7 cut(s) 233, 273, 983, 1803, 1812, 1976, 1989
Tru9I TTAA 7 cut(s) 233, 273, 983, 1803, 1812, 1976, 1989
TscAI CASTG 9 cut(s) 360, 681, 699, 819, 912, 930, 1023, 1687, 1936
TseFI GTSAC 1 cut(s) 1014
Tsp45I GTSAC 1 cut(s) 1014
TspDTI ATGAA 5 cut(s) 315, 351, 1253, 1538, 1809
TspRI CASTG 9 cut(s) 360, 681, 699, 819, 912, 930, 1023, 1687, 1936
VpaK11BI GGWCC 3 cut(s) 427, 1109, 1718
XagI CCTNNNNNAGG 1 cut(s) 155
XapI RAATTY 1 cut(s) 1808
XceI RCATGY 1 cut(s) 2068
XmaJI CCTAGG 1 cut(s) 1714
XmnI GAANNNNTTC 2 cut(s) 1455, 1560
XspI CTAG 7 cut(s) 117, 783, 1008, 1406, 1715, 1898, 2081
Zsp2I ATGCAT 1 cut(s) 1988
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.