Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001973

Physical Location & Seq

Genomic Coordinates Reverse (-)

44784192 .. 44786485

Gene Structure 2294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1320700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGACTATCGGAAGCTGTTTCAGTCCATTGTTTCGTCGTAAACCTTCTGGAATTAAGGCAATGAAAGACACCAAGGGGGCTAAGAGTCTGCCTGCGAAACAGAAGAACGCTTCTGGGAGAGGCGTGCCAAAAGATAGGTCTTGCGGAGATTCAGCCAACGAGATTCGGATGACCGAACTCCGGAAGAAGATCACCATCTTCAGAGACATCATCGACCTACCAGCATGTGATGCTTCTGCTGCAATAACTGAGATGGTAATGAGGTTGATGGGAGATCTACAGAAGCTTTTCCCTGAAATTGTGCTGCATAAACAATTATCGGAAATAGAGGAAGCATCTATAGAAAAGGTAAATAAGGAATTTTATTTTTTTTGGAACAAAAAAGGTCCTGCCTCCTTCTGCAAGGCATTGAAATCTATTGGAGAGTCTTGGATGACAAGTTATGACAGGTTGGACAAACCGAGATATGATTTCCCATCACTCAAGGAGAATGTCAATCAGGATGAACTCGTTGAGACGGTGCTGGAAACGCTTGATTGCTTGATGAAGATGGCACGGGACAAGTTTGATATGATGGATGAGGATGACCAGAAAAGAGAAGATTACAGCCTTCGGAATAGCTCATTTGGGAAGTTCTTGAGCGATTCAGAGAGCTACGCCTCAGGTTCCACCTGTTCTTCTCCGATCACTCCATCTTCTGTCCTACCCGAGATTGATGGTTCTCCAAGAGCACAAAAGAGAGCCAACATTGGTTCCAAATCACCATTGCTTTGGACTCTGAGAGTGCAAGCAGTTGGGAAGCTAAATCTGATTGATGTTAAGAACTTGTCTCTTCACTTATCAAAACAAGGAGCTCATGGCACCAACAATGGTCTGGACAAGATTGAAAATTTGTTTGAAGAACCATCAATTGGGACAGAATTAGAGAGAACCACTCAAAAGACAATTGCAGCAACAGATGAGGAAGTAGTAGCCCCAAATCTTAGTTTGAATGAGAAGTCTTGTGGAAAGGGTATCGACAACACAAGTGATGATGTTGAAACTCCAACCACAGCCTCTGAAACATTGGAAGCAGACACCAGAGTATCATTGCTTTCACCCTCACCTACACTTCCACAACCAAAATCAGCGCCTCTGCCTCCACCTCCACCTCCACCTCCACCTCCAACAACGCAACAACTTTCACTGCCCAATACAGAAGCAGCAACAAGAATACCAACATTCCCTCCACCACCACCACTACACACTTTGAAGCTAAATGTTGCAACACCACTGCCGCCATCACCATCACTACCCGCCATGCAGCCACAAATTGCAGCAACTCCTCCACCACCACCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231

Pfam Domains

Protein Families

No domains found.

Protein Analysis

448

Amino Acids

48.93

Weight (kDa)

6.0

Isoelectric Point (pI)

61.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11070 AT1G11070 AT1G11070 AT1G11070 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT4G04980 AT4G04980 AT4G04980
malus_domestica	MD05G1320300.v1.1 MD05G1320400.v1.1 MD05G1320600.v1.1 MD05G1320700.v1.1 MD05G1320900.v1.1 MD10G1299500.v1.1
prunus_persica	Prupe.4G041300_v2.0.a1 Prupe.4G041300_v2.0.a1
pyrus_communis	pycom05g29550 pycom05g29570
rosa_chinensis	RchiOBHm_Chr5g0007591 RchiOBHm_Chr5g0007601 RchiOBHm_Chr5g0021911 RchiOBHm_Chr7g0235111
rosa_laevigata	RLG00000013181 RLG00000031475
rosa_multiflora	Rmu_sc0015365.1_g000002 Rmu_sc0042291.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068760 Rroxscaffold_1G00068770 Rroxscaffold_4G00304220
rosa_rugosa	Rorug04G0429100
rosa_samantha	Rh4DG240000 Rh5AG057100 Rh5AG057200 Rh5BG054200 Rh5CG064000 Rh5CG064100 Rh5DG053300 Rh6BG518400 Rh6CG523900
rosa_wichuraiana	Rw5G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	860
AccB7I	CCANNNNNTGG	1 cut(s)	911
AccIII	TCCGGA	1 cut(s)	180
AciI	CCGC	3 cut(s)	144, 1277, 1296
AcsI	RAATTY	2 cut(s)	359, 889
AcuI	CTGAAG	1 cut(s)	184
AfiI	CCNNNNNNNGG	2 cut(s)	180, 911
AgsI	TTSAA	6 cut(s)	412, 887, 899, 991, 1040, 1252
AjuI	GAANNNNNNNTTGG	2 cut(s)	894, 926
AluBI	AGCT	7 cut(s)	15, 286, 621, 654, 802, 854, 1255
AluI	AGCT	7 cut(s)	15, 286, 621, 654, 802, 854, 1255
Alw21I	GWGCWC	2 cut(s)	733, 856
Alw26I	GTCTC	3 cut(s)	198, 509, 834
AlwNI	CAGNNNCTG	1 cut(s)	1058
Ama87I	CYCGRG	1 cut(s)	707
Aor13HI	TCCGGA	1 cut(s)	180
ApeKI	GCWGC	6 cut(s)	239, 304, 950, 1202, 1303, 1316
ApoI	RAATTY	2 cut(s)	359, 889
ArsI	GACNNNNNNTTYG	2 cut(s)	122, 154
Asp700I	GAANNNNTTC	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	1132
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	5 cut(s)	184, 753, 1089, 1095, 1275
AvaI	CYCGRG	1 cut(s)	707
AvaII	GGWCC	1 cut(s)	386
AxyI	CCTNAGG	1 cut(s)	661
BaeI	ACNNNNGTAYC	2 cut(s)	1068, 1101
BanI	GGYRCC	1 cut(s)	860
BanII	GRGCYC	1 cut(s)	856
Bbv12I	GWGCWC	2 cut(s)	733, 856
BbvI	GCAGC	6 cut(s)	226, 291, 962, 1214, 1315, 1328
BcoDI	GTCTC	3 cut(s)	198, 509, 834
BfmI	CTRYAG	2 cut(s)	278, 339
BfoI	RGCGCY	1 cut(s)	1133
BglII	AGATCT	1 cut(s)	274
BisI	GCNGC	7 cut(s)	240, 305, 951, 1203, 1277, 1304, 1317
BlsI	GCNGC	7 cut(s)	241, 306, 952, 1204, 1278, 1305, 1318
Bme18I	GGWCC	1 cut(s)	386
BmeT110I	CYCGRG	1 cut(s)	707
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	3 cut(s)	667, 754, 862
BmsI	GCATC	2 cut(s)	220, 344
BplI	GAGNNNNNCTC	2 cut(s)	919, 951
BpuEI	CTTGAG	2 cut(s)	467, 658
BsaBI	GATNNNNATC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	72
BsaWI	WCCGGW	1 cut(s)	180
BsaXI	ACNNNNNCTCC	2 cut(s)	1210, 1240
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 911
Bse21I	CCTNAGG	1 cut(s)	661
Bse3DI	GCAATG	3 cut(s)	66, 764, 1088
Bse8I	GATNNNNATC	1 cut(s)	194
BseAI	TCCGGA	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	5 cut(s)	174, 438, 508, 583, 589
BseJI	GATNNNNATC	1 cut(s)	194
BseLI	CCNNNNNNNGG	2 cut(s)	180, 911
BseMI	GCAATG	3 cut(s)	66, 764, 1088
BseMII	CTCAG	3 cut(s)	240, 675, 770
BseRI	GAGGAG	1 cut(s)	1314
BseXI	GCAGC	6 cut(s)	226, 291, 962, 1214, 1315, 1328
BshNI	GGYRCC	1 cut(s)	860
BsiHKAI	GWGCWC	2 cut(s)	733, 856
BsiHKCI	CYCGRG	1 cut(s)	707
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	2 cut(s)	572, 928
BslI	CCNNNNNNNGG	2 cut(s)	180, 911
BsmAI	GTCTC	3 cut(s)	198, 509, 834
BsmBI	CGTCTC	1 cut(s)	509
BsmFI	GGGAC	2 cut(s)	572, 928
BsoBI	CYCGRG	1 cut(s)	707
Bsp1286I	GDGCHC	2 cut(s)	733, 856
Bsp13I	TCCGGA	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	189, 274, 684
BspACI	CCGC	3 cut(s)	144, 1277, 1296
BspCNI	CTCAG	3 cut(s)	241, 674, 771
BspEI	TCCGGA	1 cut(s)	180
BspLI	GGNNCC	3 cut(s)	667, 754, 862
BspT107I	GGYRCC	1 cut(s)	860
BsrDI	GCAATG	3 cut(s)	66, 764, 1088
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	3 cut(s)	189, 274, 684
BssT1I	CCWWGG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	520
Bst6I	CTCTTC	1 cut(s)	837
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstC8I	GCNNGC	3 cut(s)	93, 125, 789
BstDEI	CTNAG	5 cut(s)	81, 249, 661, 779, 983
BstF5I	GGATG	5 cut(s)	174, 438, 508, 583, 589
BstH2I	RGCGCY	1 cut(s)	1133
BstHHI	GCGC	1 cut(s)	1132
BstKTI	GATC	3 cut(s)	192, 277, 687
BstMAI	GTCTC	3 cut(s)	198, 509, 834
BstMBI	GATC	3 cut(s)	189, 274, 684
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 239, 529
BstNSI	RCATGY	1 cut(s)	228
BstSFI	CTRYAG	2 cut(s)	278, 339
BstV1I	GCAGC	6 cut(s)	226, 291, 962, 1214, 1315, 1328
BstX2I	RGATCY	1 cut(s)	274
BstXI	CCANNNNNNTGG	1 cut(s)	771
BstYI	RGATCY	1 cut(s)	274
Bsu36I	CCTNAGG	1 cut(s)	661
BtsCI	GGATG	5 cut(s)	174, 438, 508, 583, 589
BtsI	GCAGTG	2 cut(s)	1184, 1271
BtsIMutI	CAGTG	2 cut(s)	1184, 1271
Cac8I	GCNNGC	3 cut(s)	93, 125, 789
CaiI	CAGNNNCTG	1 cut(s)	1058
CfoI	GCGC	1 cut(s)	1132
Cfr13I	GGNCC	1 cut(s)	386
CviAII	CATG	4 cut(s)	225, 857, 1300, 1341
DdeI	CTNAG	5 cut(s)	81, 249, 661, 779, 983
DpnI	GATC	3 cut(s)	191, 276, 686
DpnII	GATC	3 cut(s)	189, 274, 684
Eam1104I	CTCTTC	1 cut(s)	837
EarI	CTCTTC	1 cut(s)	837
Ecl136II	GAGCTC	1 cut(s)	854
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	856
Eco47I	GGWCC	1 cut(s)	386
Eco53kI	GAGCTC	1 cut(s)	854
Eco57I	CTGAAG	1 cut(s)	184
Eco81I	CCTNAGG	1 cut(s)	661
Eco88I	CYCGRG	1 cut(s)	707
EcoICRI	GAGCTC	1 cut(s)	854
EcoO109I	RGGNCCY	1 cut(s)	386
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	856
ErhI	CCWWGG	1 cut(s)	72
Esp3I	CGTCTC	1 cut(s)	509
FaeI	CATG	4 cut(s)	228, 860, 1303, 1344
FaiI	YATR	9 cut(s)	226, 309, 341, 444, 468, 572, 858, 1301, 1342
FaqI	GGGAC	2 cut(s)	572, 928
FatI	CATG	4 cut(s)	224, 856, 1299, 1340
FauI	CCCGC	1 cut(s)	1303
Fnu4HI	GCNGC	7 cut(s)	240, 305, 951, 1203, 1277, 1304, 1317
FokI	GGATG	5 cut(s)	181, 445, 515, 590, 596
FriOI	GRGCYC	1 cut(s)	856
Fsp4HI	GCNGC	7 cut(s)	240, 305, 951, 1203, 1277, 1304, 1317
GlaI	GCGC	1 cut(s)	1131
GluI	GCNGC	7 cut(s)	240, 305, 951, 1203, 1277, 1304, 1317
HaeII	RGCGCY	1 cut(s)	1133
HapII	CCGG	1 cut(s)	181
HhaI	GCGC	1 cut(s)	1132
Hin1II	CATG	4 cut(s)	228, 860, 1303, 1344
Hin6I	GCGC	1 cut(s)	1130
HinP1I	GCGC	1 cut(s)	1130
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	6 cut(s)	85, 149, 163, 425, 644, 775
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	5 cut(s)	184, 753, 1089, 1095, 1275
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188III	TCNNGA	5 cut(s)	48, 181, 500, 637, 875
Hpy8I	GTNNAC	1 cut(s)	41
Hpy99I	CGWCG	1 cut(s)	39
HpyAV	CCTTC	3 cut(s)	54, 406, 620
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4V	TGCA	8 cut(s)	242, 307, 402, 787, 950, 1265, 1303, 1316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 239, 529
HpyF3I	CTNAG	5 cut(s)	81, 249, 661, 779, 983
Hsp92II	CATG	4 cut(s)	228, 860, 1303, 1344
HspAI	GCGC	1 cut(s)	1130
Kpn2I	TCCGGA	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	189, 274, 684
LmnI	GCTCC	1 cut(s)	851
Lsp1109I	GCAGC	6 cut(s)	226, 291, 962, 1214, 1315, 1328
LweI	GCATC	2 cut(s)	220, 344
MalI	GATC	3 cut(s)	191, 276, 686
MboI	GATC	3 cut(s)	189, 274, 684
MfeI	CAATTG	2 cut(s)	909, 945
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	2 cut(s)	733, 856
MluCI	AATT	9 cut(s)	51, 297, 314, 359, 889, 909, 920, 945, 1311
MlyI	GAGTC	3 cut(s)	94, 434, 769
MmeI	TCCRAC	3 cut(s)	432, 1070, 1190
MroI	TCCGGA	1 cut(s)	180
MroXI	GAANNNNTTC	1 cut(s)	287
MseI	TTAA	2 cut(s)	54, 819
MslI	CAYNNNNRTG	1 cut(s)	1339
MspI	CCGG	1 cut(s)	181
MunI	CAATTG	2 cut(s)	909, 945
MwoI	GCNNNNNNNGC	3 cut(s)	230, 239, 529
NdeII	GATC	3 cut(s)	189, 274, 684
NlaIII	CATG	4 cut(s)	228, 860, 1303, 1344
NlaIV	GGNNCC	3 cut(s)	667, 754, 862
NspI	RCATGY	1 cut(s)	228
PdmI	GAANNNNTTC	1 cut(s)	287
PfeI	GAWTC	3 cut(s)	149, 163, 644
PflMI	CCANNNNNTGG	1 cut(s)	911
PkrI	GCNGC	7 cut(s)	241, 306, 952, 1204, 1278, 1305, 1318
PleI	GAGTC	3 cut(s)	93, 433, 769
PpsI	GAGTC	3 cut(s)	93, 433, 769
PpuMI	RGGWCCY	1 cut(s)	386
Psp124BI	GAGCTC	1 cut(s)	856
Psp5II	RGGWCCY	1 cut(s)	386
PspN4I	GGNNCC	3 cut(s)	667, 754, 862
PspPI	GGNCC	1 cut(s)	386
PspPPI	RGGWCCY	1 cut(s)	386
PstNI	CAGNNNCTG	1 cut(s)	1058
PsuI	RGATCY	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	1339
SacI	GAGCTC	1 cut(s)	856
SaqAI	TTAA	2 cut(s)	54, 819
SatI	GCNGC	7 cut(s)	240, 305, 951, 1203, 1277, 1304, 1317
Sau3AI	GATC	3 cut(s)	189, 274, 684
Sau96I	GGNCC	1 cut(s)	386
SchI	GAGTC	3 cut(s)	94, 434, 769
SduI	GDGCHC	2 cut(s)	733, 856
SfaNI	GCATC	2 cut(s)	220, 344
SfcI	CTRYAG	2 cut(s)	278, 339
SinI	GGWCC	1 cut(s)	386
SmiMI	CAYNNNNRTG	1 cut(s)	1339
SmlI	CTYRAG	2 cut(s)	482, 637
SmoI	CTYRAG	2 cut(s)	482, 637
Sse9I	AATT	9 cut(s)	51, 297, 314, 359, 889, 909, 920, 945, 1311
SsiI	CCGC	3 cut(s)	144, 1277, 1296
SstI	GAGCTC	1 cut(s)	856
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	520
TaqI	TCGA	2 cut(s)	213, 1017
TaqII	GACCGA	1 cut(s)	188
TasI	AATT	9 cut(s)	51, 297, 314, 359, 889, 909, 920, 945, 1311
TauI	GCSGC	1 cut(s)	1279
TfiI	GAWTC	3 cut(s)	149, 163, 644
Tru1I	TTAA	2 cut(s)	54, 819
Tru9I	TTAA	2 cut(s)	54, 819
TscAI	CASTG	2 cut(s)	1191, 1278
TseI	GCWGC	6 cut(s)	239, 304, 950, 1202, 1303, 1316
TspDTI	ATGAA	3 cut(s)	77, 519, 560
TspRI	CASTG	2 cut(s)	1191, 1278
Van91I	CCANNNNNTGG	1 cut(s)	911
VpaK11BI	GGWCC	1 cut(s)	386
XapI	RAATTY	2 cut(s)	359, 889
XceI	RCATGY	1 cut(s)	228
XcmI	CCANNNNNNNNNTGG	1 cut(s)	871
XmnI	GAANNNNTTC	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.