Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001973

Physical Location & Seq

Genomic Coordinates Forward (+)

4846342 .. 4847842

Gene Structure 1501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28864

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAACCAGGATCAACAGCAGCAGGTCCACCAACCCCACTACCGATGCCGGTTGCAACTGCATCTGCTCCACCACCCCCACCACCCTTGCTGGTTGCAAATGGAGCTGCTCCACCACCCCCACCACCCATGGGGAGGCCTGCAAATGGAGCTGCTCCACCCCCACCTCCTGCACTTGGTGGAAGATCCTTACTTATGAAGAAATCAAATACTAAATTGAAGAGATCATCCCAAATGGGAAGTCTGTATCGGACTCTAAAGGGGAAGGTGGAAGGGTCAAGCTTGAATGGTAAATCATCCAATGGGAGAAAGGGTGGAGCAGCTGGGAGCAGCGCAGCAGGTGGTAAAGGAATGGCTGATGCTCTAGCAGAGATGACAAAGAGATCAGCATACTTTCAACAAATTGAAGAAGATGTTCACAAATATTCAAAGGCTATAATAAATATGAGAACTACCCTGAGTTCTTTCCAAACAAAAGACACGAATGAGCTGTTAGAGTTCCACAAGAAAGTAGAATCCATTCTTGAAAACTTGACTGATGAGACACAGGTTTTATCAAGGTTTGAAGGATTCCCTACAAAAAAGTTAGAAACAATGAGGGCAGCAGTAGCACTCCACTCACAGCTAAATGCAATGATCACTGAACTACACAATTGGAAAATAGAGGCTCCCCTAGGTCCTCTCCTTGACAAGATTGAACGTTATTTCACCAAGATCAAAGGAGAAATAGATAAACTGGAGCGAACAAAAGATGAAGAAATTAAGAAATTTAAGAGTCAAAATATCCACTTTGATTTCAATATCCTCATCCGGATAAAAGAAGCAATGGTGGATGTTTCCTCAGGCTGCATGGAGCTGGCACTAAAGGAAAGGTTGATGCAGGAAAGAAGAGAAGCAAAGGCCAGTGGAGAGGCACAAACTACTGGAACCAAAACTGAGAAAAAACAATTGAAGATATGCATTAAAATGCTGTGGAGGGCTTTTCAGTTTGCCTTCAAGGTCTATACCTTTGCTGGTGGACACGATGATCGTGCCGACATGCTCACAAGAGAACTAGCTACTGAAATTGAGTCTGACCCCTACCAGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231

Pfam Domains

Protein Families

No domains found.

Protein Analysis

363

Amino Acids

39.88

Weight (kDa)

9.42

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11070 AT1G11070 AT1G11070 AT1G11070 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT4G04980 AT4G04980 AT4G04980
malus_domestica	MD05G1320300.v1.1 MD05G1320400.v1.1 MD05G1320600.v1.1 MD05G1320700.v1.1 MD05G1320900.v1.1 MD10G1299500.v1.1
prunus_persica	Prupe.4G041300_v2.0.a1 Prupe.4G041300_v2.0.a1
pyrus_communis	pycom05g29550 pycom05g29570
rosa_chinensis	RchiOBHm_Chr5g0007591 RchiOBHm_Chr5g0007601 RchiOBHm_Chr5g0021911 RchiOBHm_Chr7g0235111
rosa_laevigata	RLG00000013181 RLG00000031475
rosa_multiflora	Rmu_sc0015365.1_g000002 Rmu_sc0042291.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068760 Rroxscaffold_1G00068770 Rroxscaffold_4G00304220
rosa_rugosa	Rorug04G0429100
rosa_samantha	Rh4DG240000 Rh5AG057100 Rh5AG057200 Rh5BG054200 Rh5CG064000 Rh5CG064100 Rh5DG053300 Rh6BG518400 Rh6CG523900
rosa_wichuraiana	Rw5G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	329
Acc36I	ACCTGC	2 cut(s)	14, 329
AccIII	TCCGGA	1 cut(s)	810
AclI	AACGTT	1 cut(s)	700
AclWI	GGATC	2 cut(s)	19, 180
AcsI	RAATTY	1 cut(s)	767
AdeI	CACNNNGTG	1 cut(s)	179
AfiI	CCNNNNNNNGG	4 cut(s)	131, 135, 146, 176
AjnI	CCWGG	1 cut(s)	7
AluBI	AGCT	8 cut(s)	107, 152, 282, 323, 490, 625, 856, 1058
AluI	AGCT	8 cut(s)	107, 152, 282, 323, 490, 625, 856, 1058
Alw26I	GTCTC	1 cut(s)	536
AlwI	GGATC	2 cut(s)	19, 180
Aor13HI	TCCGGA	1 cut(s)	810
AoxI	GGCC	2 cut(s)	137, 900
ApeKI	GCWGC	8 cut(s)	20, 107, 152, 320, 330, 335, 602, 846
ApoI	RAATTY	1 cut(s)	767
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
Asp700I	GAANNNNTTC	2 cut(s)	414, 519
AspA2I	CCTAGG	1 cut(s)	673
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	2 cut(s)	26, 677
AsuHPI	GGTGA	1 cut(s)	700
AvaII	GGWCC	2 cut(s)	26, 677
AvrII	CCTAGG	1 cut(s)	673
AxyI	CCTNAGG	1 cut(s)	841
BbvI	GCAGC	8 cut(s)	32, 94, 139, 332, 342, 347, 614, 833
BcgI	CGANNNNNNTGC	2 cut(s)	1013, 1047
BciT130I	CCWGG	1 cut(s)	9
BclI	TGATCA	1 cut(s)	636
BcoDI	GTCTC	1 cut(s)	536
BfaI	CTAG	3 cut(s)	365, 674, 1055
BfuAI	ACCTGC	2 cut(s)	14, 329
BisI	GCNGC	8 cut(s)	21, 108, 153, 321, 331, 336, 603, 847
BlnI	CCTAGG	1 cut(s)	673
BlsI	GCNGC	8 cut(s)	22, 109, 154, 322, 332, 337, 604, 848
Bme1390I	CCNGG	1 cut(s)	9
Bme18I	GGWCC	2 cut(s)	26, 677
BmgT120I	GGNCC	2 cut(s)	26, 677
BmiI	GGNNCC	3 cut(s)	6, 669, 928
BmrFI	CCNGG	1 cut(s)	9
BmsI	GCATC	4 cut(s)	36, 71, 349, 867
BpmI	CTGGAG	1 cut(s)	758
BsaJI	CCNNGG	2 cut(s)	129, 673
BsaWI	WCCGGW	1 cut(s)	810
BsaXI	ACNNNNNCTCC	2 cut(s)	298, 328
Bsc4I	CCNNNNNNNGG	4 cut(s)	131, 135, 146, 176
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	3 cut(s)	741, 903, 928
Bse21I	CCTNAGG	1 cut(s)	841
Bse3DI	GCAATG	2 cut(s)	639, 831
BseAI	TCCGGA	1 cut(s)	810
BseBI	CCWGG	1 cut(s)	9
BseDI	CCNNGG	2 cut(s)	129, 673
BseGI	GGATG	4 cut(s)	227, 296, 807, 838
BseLI	CCNNNNNNNGG	4 cut(s)	131, 135, 146, 176
BseMI	GCAATG	2 cut(s)	639, 831
BseMII	CTCAG	3 cut(s)	449, 855, 927
BseNI	ACTGG	3 cut(s)	741, 903, 928
BseXI	GCAGC	8 cut(s)	32, 94, 139, 332, 342, 347, 614, 833
BseYI	CCCAGC	1 cut(s)	323
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	139, 902
BsiSI	CCGG	2 cut(s)	50, 811
BslI	CCNNNNNNNGG	4 cut(s)	131, 135, 146, 176
BsmAI	GTCTC	1 cut(s)	536
BsnI	GGCC	2 cut(s)	139, 902
Bsp13I	TCCGGA	1 cut(s)	810
Bsp143I	GATC	7 cut(s)	11, 185, 224, 383, 636, 714, 1027
Bsp19I	CCATGG	1 cut(s)	129
BspANI	GGCC	2 cut(s)	139, 902
BspCNI	CTCAG	3 cut(s)	450, 854, 928
BspEI	TCCGGA	1 cut(s)	810
BspLI	GGNNCC	3 cut(s)	6, 669, 928
BspMI	ACCTGC	2 cut(s)	14, 329
BspPI	GGATC	2 cut(s)	19, 180
BsrDI	GCAATG	2 cut(s)	639, 831
BsrFI	RCCGGY	1 cut(s)	49
BsrI	ACTGG	3 cut(s)	741, 903, 928
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	2 cut(s)	129, 673
BssMI	GATC	7 cut(s)	11, 185, 224, 383, 636, 714, 1027
BssT1I	CCWWGG	2 cut(s)	129, 673
Bst2UI	CCWGG	1 cut(s)	9
Bst6I	CTCTTC	2 cut(s)	215, 883
BstC8I	GCNNGC	2 cut(s)	141, 858
BstDEI	CTNAG	3 cut(s)	458, 841, 936
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	4 cut(s)	227, 296, 807, 838
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	7 cut(s)	14, 188, 227, 386, 639, 717, 1030
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	7 cut(s)	11, 185, 224, 383, 636, 714, 1027
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 149, 608
BstNI	CCWGG	1 cut(s)	9
BstNSI	RCATGY	1 cut(s)	1042
BstSCI	CCNGG	1 cut(s)	7
BstV1I	GCAGC	8 cut(s)	32, 94, 139, 332, 342, 347, 614, 833
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
Bsu36I	CCTNAGG	1 cut(s)	841
BsuRI	GGCC	2 cut(s)	139, 902
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	4 cut(s)	227, 296, 807, 838
BtsIMutI	CAGTG	3 cut(s)	639, 910, 1087
BveI	ACCTGC	2 cut(s)	14, 329
Cac8I	GCNNGC	2 cut(s)	141, 858
CfoI	GCGC	1 cut(s)	335
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	2 cut(s)	26, 677
CspCI	CAANNNNNGTGG	2 cut(s)	69, 104
CviAII	CATG	3 cut(s)	130, 850, 1039
DdeI	CTNAG	3 cut(s)	458, 841, 936
DpnI	GATC	7 cut(s)	13, 187, 226, 385, 638, 716, 1029
DpnII	GATC	7 cut(s)	11, 185, 224, 383, 636, 714, 1027
DraIII	CACNNNGTG	1 cut(s)	179
Eam1104I	CTCTTC	2 cut(s)	215, 883
EarI	CTCTTC	2 cut(s)	215, 883
Eco130I	CCWWGG	2 cut(s)	129, 673
Eco147I	AGGCCT	1 cut(s)	139
Eco47I	GGWCC	2 cut(s)	26, 677
Eco81I	CCTNAGG	1 cut(s)	841
EcoO109I	RGGNCCY	1 cut(s)	677
EcoRII	CCWGG	1 cut(s)	7
EcoT14I	CCWWGG	2 cut(s)	129, 673
EcoT22I	ATGCAT	1 cut(s)	962
ErhI	CCWWGG	2 cut(s)	129, 673
FaeI	CATG	3 cut(s)	133, 853, 1042
FaiI	YATR	9 cut(s)	131, 197, 391, 437, 446, 851, 958, 1005, 1040
FatI	CATG	3 cut(s)	129, 849, 1038
FbaI	TGATCA	1 cut(s)	636
Fnu4HI	GCNGC	8 cut(s)	21, 108, 153, 321, 331, 336, 603, 847
FokI	GGATG	4 cut(s)	214, 283, 794, 845
Fsp4HI	GCNGC	8 cut(s)	21, 108, 153, 321, 331, 336, 603, 847
FspBI	CTAG	3 cut(s)	365, 674, 1055
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	8 cut(s)	21, 108, 153, 321, 331, 336, 603, 847
GsaI	CCCAGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	758
HaeIII	GGCC	2 cut(s)	139, 902
HapII	CCGG	2 cut(s)	50, 811
HhaI	GCGC	1 cut(s)	335
Hin1II	CATG	3 cut(s)	133, 853, 1042
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HindIII	AAGCTT	1 cut(s)	280
HinfI	GANTC	5 cut(s)	253, 515, 570, 775, 1070
HpaII	CCGG	2 cut(s)	50, 811
HphI	GGTGA	1 cut(s)	700
Hpy166II	GTNNAC	3 cut(s)	29, 418, 1019
Hpy188I	TCNGA	2 cut(s)	252, 1075
Hpy188III	TCNNGA	2 cut(s)	524, 811
Hpy8I	GTNNAC	3 cut(s)	29, 418, 1019
HpyAV	CCTTC	4 cut(s)	259, 266, 560, 1003
HpyCH4IV	ACGT	1 cut(s)	700
HpyCH4V	TGCA	9 cut(s)	56, 62, 98, 143, 173, 632, 849, 880, 960
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 149, 608
HpyF3I	CTNAG	3 cut(s)	458, 841, 936
HpySE526I	ACGT	1 cut(s)	700
Hsp92II	CATG	3 cut(s)	133, 853, 1042
HspAI	GCGC	1 cut(s)	333
Kpn2I	TCCGGA	1 cut(s)	810
Ksp22I	TGATCA	1 cut(s)	636
Kzo9I	GATC	7 cut(s)	11, 185, 224, 383, 636, 714, 1027
Lsp1109I	GCAGC	8 cut(s)	32, 94, 139, 332, 342, 347, 614, 833
LweI	GCATC	4 cut(s)	36, 71, 349, 867
MaeI	CTAG	3 cut(s)	365, 674, 1055
MaeII	ACGT	1 cut(s)	700
MalI	GATC	7 cut(s)	13, 187, 226, 385, 638, 716, 1029
MboI	GATC	7 cut(s)	11, 185, 224, 383, 636, 714, 1027
MboII	GAAGA	8 cut(s)	195, 211, 232, 419, 422, 767, 900, 964
MfeI	CAATTG	2 cut(s)	652, 947
MflI	RGATCY	1 cut(s)	185
MluCI	AATT	7 cut(s)	215, 402, 652, 759, 767, 947, 1065
MlyI	GAGTC	3 cut(s)	247, 784, 1079
MnlI	CCTC	9 cut(s)	129, 177, 591, 658, 690, 815, 850, 904, 969
Mph1103I	ATGCAT	1 cut(s)	962
MroI	TCCGGA	1 cut(s)	810
MroXI	GAANNNNTTC	2 cut(s)	414, 519
MseI	TTAA	3 cut(s)	762, 771, 963
MslI	CAYNNNNRTG	1 cut(s)	965
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	2 cut(s)	50, 811
MspR9I	CCNGG	1 cut(s)	9
MunI	CAATTG	2 cut(s)	652, 947
MvaI	CCWGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	3 cut(s)	104, 149, 608
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	7 cut(s)	11, 185, 224, 383, 636, 714, 1027
NlaIII	CATG	3 cut(s)	133, 853, 1042
NlaIV	GGNNCC	3 cut(s)	6, 669, 928
NsiI	ATGCAT	1 cut(s)	962
NspI	RCATGY	1 cut(s)	1042
PaqCI	CACCTGC	1 cut(s)	329
PceI	AGGCCT	1 cut(s)	139
PdmI	GAANNNNTTC	2 cut(s)	414, 519
PfeI	GAWTC	2 cut(s)	515, 570
PkrI	GCNGC	8 cut(s)	22, 109, 154, 322, 332, 337, 604, 848
PleI	GAGTC	3 cut(s)	247, 783, 1078
PpsI	GAGTC	3 cut(s)	247, 783, 1078
PpuMI	RGGWCCY	1 cut(s)	677
Psp1406I	AACGTT	1 cut(s)	700
Psp5II	RGGWCCY	1 cut(s)	677
Psp6I	CCWGG	1 cut(s)	7
PspFI	CCCAGC	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	7
PspN4I	GGNNCC	3 cut(s)	6, 669, 928
PspPI	GGNCC	2 cut(s)	26, 677
PspPPI	RGGWCCY	1 cut(s)	677
PsuI	RGATCY	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	323
RseI	CAYNNNNRTG	1 cut(s)	965
SaqAI	TTAA	3 cut(s)	762, 771, 963
SatI	GCNGC	8 cut(s)	21, 108, 153, 321, 331, 336, 603, 847
Sau3AI	GATC	7 cut(s)	11, 185, 224, 383, 636, 714, 1027
Sau96I	GGNCC	2 cut(s)	26, 677
SchI	GAGTC	3 cut(s)	247, 784, 1079
ScrFI	CCNGG	1 cut(s)	9
SfaNI	GCATC	4 cut(s)	36, 71, 349, 867
SinI	GGWCC	2 cut(s)	26, 677
SmiMI	CAYNNNNRTG	1 cut(s)	965
Sse9I	AATT	7 cut(s)	215, 402, 652, 759, 767, 947, 1065
SseBI	AGGCCT	1 cut(s)	139
SspI	AATATT	1 cut(s)	425
SspMI	CTAG	3 cut(s)	365, 674, 1055
StuI	AGGCCT	1 cut(s)	139
StyD4I	CCNGG	1 cut(s)	7
StyI	CCWWGG	2 cut(s)	129, 673
TaiI	ACGT	1 cut(s)	703
TasI	AATT	7 cut(s)	215, 402, 652, 759, 767, 947, 1065
TfiI	GAWTC	2 cut(s)	515, 570
Tru1I	TTAA	3 cut(s)	762, 771, 963
Tru9I	TTAA	3 cut(s)	762, 771, 963
TscAI	CASTG	2 cut(s)	646, 910
TseI	GCWGC	8 cut(s)	20, 107, 152, 320, 330, 335, 602, 846
TspDTI	ATGAA	2 cut(s)	212, 768
TspRI	CASTG	2 cut(s)	646, 910
VpaK11BI	GGWCC	2 cut(s)	26, 677
XapI	RAATTY	1 cut(s)	767
XceI	RCATGY	1 cut(s)	1042
XmaJI	CCTAGG	1 cut(s)	673
XmnI	GAANNNNTTC	2 cut(s)	414, 519
XspI	CTAG	3 cut(s)	365, 674, 1055
Zsp2I	ATGCAT	1 cut(s)	962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.