Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001973

Physical Location & Seq

Genomic Coordinates Reverse (-)

89842112 .. 89845904

Gene Structure 3793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00068770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGATGGAAATTCATATAGCTAGAAGCTGGAATACAATCCCAGCAATCTGTAAAAATTCTCTTCCTGCATGCCCCGAGTTATGGGATCAAGGAACAAAAGGCTCTAACCGGCCCAAGAGTCAGAATGTCACCAAAAGCACACCAGCAGACGACTCTTATGGAGTTGCAGGAAATTCTGCTCTGACGATGGCGCTTAGGAAGAAGATCGTGACCTTCAGGGATGTCATGGACCTGCCAACATGTAATGCTTCTTCACCCATAAATCAGCTGGTGATGGGGTTGATGCTTGATCTCCAAAAGCTCTACCCTGAAATTGTACGTCGTAGTCAATTATCAGAAATGAAGGGAGCATCTACAGAAAAGGCTGATGCACATAAAATCTTCGTGAAGATCCTGGCCTCCTTCTGCAATGCACTGAAATCTATTGGAGATTCATGGATGACAAACCATGATAGGTTGGACAAACTGAGATATGATATGCCATCATTCAAAGAGAATGCCAATTGGGACCAACACGGTATGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.58

Weight (kDa)

8.9

Isoelectric Point (pI)

50.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11070 AT1G11070 AT1G11070 AT1G11070 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT4G04980 AT4G04980 AT4G04980
malus_domestica	MD05G1320300.v1.1 MD05G1320400.v1.1 MD05G1320600.v1.1 MD05G1320700.v1.1 MD05G1320900.v1.1 MD10G1299500.v1.1
prunus_persica	Prupe.4G041300_v2.0.a1 Prupe.4G041300_v2.0.a1
pyrus_communis	pycom05g29550 pycom05g29570
rosa_chinensis	RchiOBHm_Chr5g0007591 RchiOBHm_Chr5g0007601 RchiOBHm_Chr5g0021911 RchiOBHm_Chr7g0235111
rosa_laevigata	RLG00000013181 RLG00000031475
rosa_multiflora	Rmu_sc0015365.1_g000002 Rmu_sc0042291.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068760 Rroxscaffold_1G00068770 Rroxscaffold_4G00304220
rosa_rugosa	Rorug04G0429100
rosa_samantha	Rh4DG240000 Rh5AG057100 Rh5AG057200 Rh5BG054200 Rh5CG064000 Rh5CG064100 Rh5DG053300 Rh6BG518400 Rh6CG523900
rosa_wichuraiana	Rw5G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	240
AclWI	GGATC	2 cut(s)	93, 385
AcsI	RAATTY	3 cut(s)	9, 55, 172
AcuI	CTGAAG	1 cut(s)	199
AfaI	GTAC	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	81
AflIII	ACRYGT	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	490
AjnI	CCWGG	1 cut(s)	393
AluBI	AGCT	4 cut(s)	20, 27, 268, 301
AluI	AGCT	4 cut(s)	20, 27, 268, 301
AlwI	GGATC	2 cut(s)	93, 385
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	2 cut(s)	110, 396
ApoI	RAATTY	3 cut(s)	9, 55, 172
AspLEI	GCGC	1 cut(s)	193
AspS9I	GGNCC	3 cut(s)	111, 229, 508
AsuHPI	GGTGA	3 cut(s)	121, 246, 283
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	2 cut(s)	229, 508
BarI	GAAGNNNNNNTAC	4 cut(s)	16, 48, 235, 267
BccI	CCATC	3 cut(s)	181, 268, 490
BciT130I	CCWGG	1 cut(s)	395
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	354
BfoI	RGCGCY	1 cut(s)	194
BfuAI	ACCTGC	1 cut(s)	240
Bme1390I	CCNGG	1 cut(s)	395
Bme18I	GGWCC	2 cut(s)	229, 508
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	3 cut(s)	111, 229, 508
BmiI	GGNNCC	1 cut(s)	509
BmrFI	CCNGG	1 cut(s)	395
BmsI	GCATC	3 cut(s)	273, 358, 359
Bpu10I	CCTNAGC	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse118I	RCCGGY	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	395
BseGI	GGATG	2 cut(s)	226, 444
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMI	GCAATG	1 cut(s)	415
BseMII	CTCAG	1 cut(s)	458
BseYI	CCCAGC	1 cut(s)	40
BshFI	GGCC	2 cut(s)	112, 398
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	521
BsmI	GAATGC	1 cut(s)	502
BsnI	GGCC	2 cut(s)	112, 398
BsoBI	CYCGRG	1 cut(s)	74
Bsp143I	GATC	4 cut(s)	85, 204, 289, 390
BspANI	GGCC	2 cut(s)	112, 398
BspCNI	CTCAG	1 cut(s)	459
BspLI	GGNNCC	1 cut(s)	509
BspMI	ACCTGC	1 cut(s)	240
BspPI	GGATC	2 cut(s)	93, 385
BsrDI	GCAATG	1 cut(s)	415
BsrFI	RCCGGY	1 cut(s)	108
BssAI	RCCGGY	1 cut(s)	108
BssMI	GATC	4 cut(s)	85, 204, 289, 390
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	1 cut(s)	518
Bst6I	CTCTTC	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	2 cut(s)	194, 467
BstF5I	GGATG	2 cut(s)	226, 444
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	4 cut(s)	88, 207, 292, 393
BstMBI	GATC	4 cut(s)	85, 204, 289, 390
BstNI	CCWGG	1 cut(s)	395
BstNSI	RCATGY	2 cut(s)	72, 243
BstSCI	CCNGG	1 cut(s)	393
BstSFI	CTRYAG	1 cut(s)	354
BstX2I	RGATCY	1 cut(s)	390
BstYI	RGATCY	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	112, 398
BtsCI	GGATG	2 cut(s)	226, 444
BtsIMutI	CAGTG	1 cut(s)	413
BveI	ACCTGC	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	70
CfoI	GCGC	1 cut(s)	193
Cfr10I	RCCGGY	1 cut(s)	108
Cfr13I	GGNCC	3 cut(s)	111, 229, 508
Csp6I	GTAC	1 cut(s)	317
CviAII	CATG	5 cut(s)	69, 226, 240, 435, 449
CviJI	RGCY	8 cut(s)	20, 27, 102, 112, 268, 301, 365, 398
CviKI_1	RGCY	8 cut(s)	20, 27, 102, 112, 268, 301, 365, 398
CviQI	GTAC	1 cut(s)	317
DdeI	CTNAG	2 cut(s)	194, 467
DpnI	GATC	4 cut(s)	87, 206, 291, 392
DpnII	GATC	4 cut(s)	85, 204, 289, 390
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Eco47I	GGWCC	2 cut(s)	229, 508
Eco57I	CTGAAG	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	393
FaeI	CATG	5 cut(s)	72, 229, 243, 438, 452
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	5 cut(s)	68, 225, 239, 434, 448
FokI	GGATG	2 cut(s)	233, 451
FspBI	CTAG	1 cut(s)	21
GlaI	GCGC	1 cut(s)	192
GsaI	CCCAGC	1 cut(s)	44
HaeII	RGCGCY	1 cut(s)	194
HaeIII	GGCC	2 cut(s)	112, 398
HapII	CCGG	1 cut(s)	109
HhaI	GCGC	1 cut(s)	193
Hin1II	CATG	5 cut(s)	72, 229, 243, 438, 452
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HinfI	GANTC	3 cut(s)	118, 152, 431
HpaII	CCGG	1 cut(s)	109
HphI	GGTGA	3 cut(s)	121, 246, 283
Hpy188I	TCNGA	3 cut(s)	123, 183, 337
Hpy188III	TCNNGA	2 cut(s)	208, 385
Hpy99I	CGWCG	1 cut(s)	324
HpyAV	CCTTC	3 cut(s)	223, 337, 412
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	5 cut(s)	68, 167, 371, 408, 413
HpyF3I	CTNAG	2 cut(s)	194, 467
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	5 cut(s)	72, 229, 243, 438, 452
HspAI	GCGC	1 cut(s)	191
Kzo9I	GATC	4 cut(s)	85, 204, 289, 390
LmnI	GCTCC	1 cut(s)	347
LweI	GCATC	3 cut(s)	273, 358, 359
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	2 cut(s)	127, 208
MalI	GATC	4 cut(s)	87, 206, 291, 392
MboI	GATC	4 cut(s)	85, 204, 289, 390
MboII	GAAGA	6 cut(s)	53, 211, 214, 243, 373, 400
MfeI	CAATTG	1 cut(s)	502
MflI	RGATCY	1 cut(s)	390
MluCI	AATT	6 cut(s)	9, 55, 172, 312, 329, 502
MlyI	GAGTC	2 cut(s)	127, 146
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	1 cut(s)	409
MspA1I	CMGCKG	1 cut(s)	268
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	1 cut(s)	395
MunI	CAATTG	1 cut(s)	502
Mva1269I	GAATGC	1 cut(s)	502
MvaI	CCWGG	1 cut(s)	395
NdeII	GATC	4 cut(s)	85, 204, 289, 390
NlaIII	CATG	5 cut(s)	72, 229, 243, 438, 452
NlaIV	GGNNCC	1 cut(s)	509
NmuCI	GTSAC	2 cut(s)	127, 208
NspI	RCATGY	2 cut(s)	72, 243
PaeI	GCATGC	1 cut(s)	72
PciI	ACATGT	1 cut(s)	239
PctI	GAATGC	1 cut(s)	502
PfeI	GAWTC	1 cut(s)	431
PleI	GAGTC	2 cut(s)	126, 146
PpsI	GAGTC	2 cut(s)	126, 146
PscI	ACATGT	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	393
PspFI	CCCAGC	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	1 cut(s)	509
PspPI	GGNCC	3 cut(s)	111, 229, 508
PsuI	RGATCY	1 cut(s)	390
PvuII	CAGCTG	1 cut(s)	268
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
Sau3AI	GATC	4 cut(s)	85, 204, 289, 390
Sau96I	GGNCC	3 cut(s)	111, 229, 508
SchI	GAGTC	2 cut(s)	127, 146
ScrFI	CCNGG	1 cut(s)	395
SetI	ASST	8 cut(s)	22, 29, 215, 234, 270, 303, 322, 458
SfaNI	GCATC	3 cut(s)	273, 358, 359
SfcI	CTRYAG	1 cut(s)	354
SinI	GGWCC	2 cut(s)	229, 508
SphI	GCATGC	1 cut(s)	72
Sse9I	AATT	6 cut(s)	9, 55, 172, 312, 329, 502
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	518
TaiI	ACGT	1 cut(s)	322
TasI	AATT	6 cut(s)	9, 55, 172, 312, 329, 502
TfiI	GAWTC	1 cut(s)	431
TscAI	CASTG	1 cut(s)	420
TseFI	GTSAC	2 cut(s)	127, 208
Tsp45I	GTSAC	2 cut(s)	127, 208
TspDTI	ATGAA	2 cut(s)	356, 423
TspRI	CASTG	1 cut(s)	420
VpaK11BI	GGWCC	2 cut(s)	229, 508
XapI	RAATTY	3 cut(s)	9, 55, 172
XceI	RCATGY	2 cut(s)	72, 243
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.