Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001973

Physical Location & Seq

Genomic Coordinates Reverse (-)

58654801 .. 58655178

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0429100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCCTCCTCCCCCGACCACAACCACAACCACAACCACAACCACACCCTGAACGACGATTCCAACACCCACGCCTCCAAAAAGCCCAAACTCTCCTTCATCACCCCCTCCGAAATCGCCGCCGAATTCTCCCACCACGACCCCACCGTCGCCCGAATCAACAACGGCAGCTTCGGGTCCTGCCCCGACTCCGTCCTCCAGGCCCAGCGCCGCTGGCAGCTCAAGTACCTCTCCCAGCCCGATCACTTCTACTTCAACCACCTCCAAACCAGCATCCTCCACTCCCGCACCCTCATCAAGGACCTCATCAACGCCGACCACGTCGACGAGGTCTCCATCATCGACAACGCCACCACCGCCGCCGCCATCGTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

14.0

Weight (kDa)

6.27

Isoelectric Point (pI)

48.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11070 AT1G11070 AT1G11070 AT1G11070 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT4G04980 AT4G04980 AT4G04980
malus_domestica	MD05G1320300.v1.1 MD05G1320400.v1.1 MD05G1320600.v1.1 MD05G1320700.v1.1 MD05G1320900.v1.1 MD10G1299500.v1.1
prunus_persica	Prupe.4G041300_v2.0.a1 Prupe.4G041300_v2.0.a1
pyrus_communis	pycom05g29550 pycom05g29570
rosa_chinensis	RchiOBHm_Chr5g0007591 RchiOBHm_Chr5g0007601 RchiOBHm_Chr5g0021911 RchiOBHm_Chr7g0235111
rosa_laevigata	RLG00000013181 RLG00000031475
rosa_multiflora	Rmu_sc0015365.1_g000002 Rmu_sc0042291.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068760 Rroxscaffold_1G00068770 Rroxscaffold_4G00304220
rosa_rugosa	Rorug04G0429100
rosa_samantha	Rh4DG240000 Rh5AG057100 Rh5AG057200 Rh5BG054200 Rh5CG064000 Rh5CG064100 Rh5DG053300 Rh6BG518400 Rh6CG523900
rosa_wichuraiana	Rw5G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	324
AciI	CCGC	6 cut(s)	120, 211, 286, 357, 360, 363
AcsI	RAATTY	1 cut(s)	125
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	1 cut(s)	256
AjiI	CACGTC	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	198
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
AloI	GAACNNNNNNTCC	2 cut(s)	44, 76
AluBI	AGCT	2 cut(s)	171, 220
AluI	AGCT	2 cut(s)	171, 220
Alw26I	GTCTC	1 cut(s)	337
AoxI	GGCC	2 cut(s)	3, 201
ApeKI	GCWGC	2 cut(s)	168, 217
ApoI	RAATTY	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	210
AspS9I	GGNCC	3 cut(s)	177, 202, 301
AsuHPI	GGTGA	1 cut(s)	94
AvaII	GGWCC	2 cut(s)	177, 301
BbvI	GCAGC	2 cut(s)	180, 229
BccI	CCATC	2 cut(s)	344, 374
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	337
BfaI	CTAG	1 cut(s)	376
BfoI	RGCGCY	1 cut(s)	211
BisI	GCNGC	6 cut(s)	120, 169, 211, 218, 360, 363
BlsI	GCNGC	6 cut(s)	121, 170, 212, 219, 361, 364
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	2 cut(s)	177, 301
BmgBI	CACGTC	1 cut(s)	322
BmgT120I	GGNCC	3 cut(s)	177, 202, 301
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	337
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	200
BseGI	GGATG	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseXI	GCAGC	2 cut(s)	180, 229
BseYI	CCCAGC	2 cut(s)	204, 234
BshFI	GGCC	2 cut(s)	5, 203
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	1 cut(s)	337
BsnI	GGCC	2 cut(s)	5, 203
Bso31I	GGTCTC	1 cut(s)	337
Bsp143I	GATC	1 cut(s)	241
BspACI	CCGC	6 cut(s)	120, 211, 286, 357, 360, 363
BspANI	GGCC	2 cut(s)	5, 203
BspLI	GGNNCC	1 cut(s)	178
BspTNI	GGTCTC	1 cut(s)	337
BssMI	GATC	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	215
BstENI	CCTNNNNNAGG	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	273
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	1 cut(s)	244
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	2 cut(s)	214, 356
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	180, 229
BsuRI	GGCC	2 cut(s)	5, 203
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	215
CfoI	GCGC	1 cut(s)	210
Cfr13I	GGNCC	3 cut(s)	177, 202, 301
Csp6I	GTAC	1 cut(s)	226
CviJI	RGCY	6 cut(s)	5, 85, 171, 203, 220, 238
CviKI_1	RGCY	6 cut(s)	5, 85, 171, 203, 220, 238
CviQI	GTAC	1 cut(s)	226
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
Eco31I	GGTCTC	1 cut(s)	337
Eco47I	GGWCC	2 cut(s)	177, 301
EcoNI	CCTNNNNNAGG	1 cut(s)	296
EcoO109I	RGGNCCY	2 cut(s)	177, 301
EcoRI	GAATTC	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	198
FauI	CCCGC	1 cut(s)	293
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	6 cut(s)	120, 169, 211, 218, 360, 363
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	6 cut(s)	120, 169, 211, 218, 360, 363
FspBI	CTAG	1 cut(s)	376
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	6 cut(s)	120, 169, 211, 218, 360, 363
GsaI	CCCAGC	2 cut(s)	208, 238
GsuI	CTGGAG	1 cut(s)	182
HaeII	RGCGCY	1 cut(s)	211
HaeIII	GGCC	2 cut(s)	5, 203
HhaI	GCGC	1 cut(s)	210
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	3 cut(s)	59, 156, 188
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	1 cut(s)	112
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	4 cut(s)	59, 152, 326, 329
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4IV	ACGT	1 cut(s)	321
HpyF10VI	GCNNNNNNNGC	2 cut(s)	214, 356
HpySE526I	ACGT	1 cut(s)	321
HspAI	GCGC	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	241
LpnPI	CCDG	8 cut(s)	62, 185, 193, 199, 212, 218, 248, 283
Lsp1109I	GCAGC	2 cut(s)	180, 229
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	1 cut(s)	376
MaeII	ACGT	1 cut(s)	321
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MluCI	AATT	1 cut(s)	125
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	2 cut(s)	214, 356
NdeII	GATC	1 cut(s)	241
NlaIV	GGNNCC	1 cut(s)	178
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 318
PfeI	GAWTC	2 cut(s)	59, 156
PflFI	GACNNNGTC	3 cut(s)	191, 320, 329
PkrI	GCNGC	6 cut(s)	121, 170, 212, 219, 361, 364
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PpuMI	RGGWCCY	2 cut(s)	177, 301
Psp5II	RGGWCCY	2 cut(s)	177, 301
Psp6I	CCWGG	1 cut(s)	198
PspFI	CCCAGC	2 cut(s)	204, 234
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	3 cut(s)	177, 202, 301
PspPPI	RGGWCCY	2 cut(s)	177, 301
PsyI	GACNNNGTC	3 cut(s)	191, 320, 329
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SalI	GTCGAC	1 cut(s)	323
SatI	GCNGC	6 cut(s)	120, 169, 211, 218, 360, 363
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	3 cut(s)	177, 202, 301
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	200
SetI	ASST	7 cut(s)	173, 222, 231, 264, 306, 324, 333
SfaNI	GCATC	1 cut(s)	282
SgrDI	CGTCGACG	1 cut(s)	323
SinI	GGWCC	2 cut(s)	177, 301
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	1 cut(s)	125
SsiI	CCGC	6 cut(s)	120, 211, 286, 357, 360, 363
SspMI	CTAG	1 cut(s)	376
StyD4I	CCNGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	148
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	2 cut(s)	324, 342
TasI	AATT	1 cut(s)	125
TauI	GCSGC	4 cut(s)	122, 213, 362, 365
TfiI	GAWTC	2 cut(s)	59, 156
TseI	GCWGC	2 cut(s)	168, 217
TspDTI	ATGAA	1 cut(s)	88
TspGWI	ACGGA	1 cut(s)	181
Tth111I	GACNNNGTC	3 cut(s)	191, 320, 329
VpaK11BI	GGWCC	2 cut(s)	177, 301
XagI	CCTNNNNNAGG	1 cut(s)	296
XapI	RAATTY	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	324
XspI	CTAG	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.