Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001973

Physical Location & Seq

Genomic Coordinates Reverse (-)

29959471 .. 29959974

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g29550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAAGAAGGCACTGGACAAGTTTGATATGATGGATGAGGATGACCAGAAAAGAGAAGATTACAGCCCTCGGAATAGCTCATTTGGGAAGTTCTTGAGCGATTCGGAGGGTTACGCCTCAGGTTCCACCTATCCTTCTCCGATCATTCCATCTTCTGTCCTACCTGAAATTGATGGTTCTCCGAAAGCACGAAAAAATGCCAACATTGGATCCAAATCACGATTGCTTTGGACTCTGAGAGTGCAAACAGTTGGGAAGCTAAATCCGATTGATGTTAAGAACTTGTCTCTTCACTTATCAAAACAAGAAGCTCATGGCACCAACAATGGCCTGGACAAGATTGAAAATTTGTTTGAAGAACCACCAATTGGGACAAAATTAGAGAGCAACCCTCAAAAGACAATTGCAGCAACAGATGAGGAAGTAGTGGCCCCAAATCTTAGTTTGGATGAAAATCTAGTGGAAAGGGTATCGACAACACAAGTGATGATGTTGAAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.49

Weight (kDa)

5.28

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11070 AT1G11070 AT1G11070 AT1G11070 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT1G61080 AT4G04980 AT4G04980 AT4G04980
malus_domestica	MD05G1320300.v1.1 MD05G1320400.v1.1 MD05G1320600.v1.1 MD05G1320700.v1.1 MD05G1320900.v1.1 MD10G1299500.v1.1
prunus_persica	Prupe.4G041300_v2.0.a1 Prupe.4G041300_v2.0.a1
pyrus_communis	pycom05g29550 pycom05g29570
rosa_chinensis	RchiOBHm_Chr5g0007591 RchiOBHm_Chr5g0007601 RchiOBHm_Chr5g0021911 RchiOBHm_Chr7g0235111
rosa_laevigata	RLG00000013181 RLG00000031475
rosa_multiflora	Rmu_sc0015365.1_g000002 Rmu_sc0042291.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068760 Rroxscaffold_1G00068770 Rroxscaffold_4G00304220
rosa_rugosa	Rorug04G0429100
rosa_samantha	Rh4DG240000 Rh5AG057100 Rh5AG057200 Rh5BG054200 Rh5CG064000 Rh5CG064100 Rh5DG053300 Rh6BG518400 Rh6CG523900
rosa_wichuraiana	Rw5G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	317
AccB7I	CCANNNNNTGG	1 cut(s)	368
AclWI	GGATC	2 cut(s)	204, 217
AcsI	RAATTY	1 cut(s)	346
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgsI	TTSAA	3 cut(s)	344, 356, 496
AjnI	CCWGG	1 cut(s)	330
AjuI	GAANNNNNNNTTGG	2 cut(s)	351, 383
AluBI	AGCT	3 cut(s)	78, 259, 311
AluI	AGCT	3 cut(s)	78, 259, 311
Alw26I	GTCTC	1 cut(s)	291
AlwI	GGATC	2 cut(s)	204, 217
AoxI	GGCC	2 cut(s)	328, 429
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	1 cut(s)	346
AspS9I	GGNCC	1 cut(s)	430
AxyI	CCTNAGG	1 cut(s)	118
BamHI	GGATCC	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	3 cut(s)	25, 157, 167
BciT130I	CCWGG	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	291
BfaI	CTAG	1 cut(s)	458
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
Bme1390I	CCNGG	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	4 cut(s)	124, 211, 319, 432
BmrFI	CCNGG	1 cut(s)	332
BplI	GAGNNNNNCTC	2 cut(s)	376, 408
BpuEI	CTTGAG	1 cut(s)	115
BsaBI	GATNNNNATC	2 cut(s)	214, 453
BsaJI	CCNNGG	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse1I	ACTGG	1 cut(s)	18
Bse21I	CCTNAGG	1 cut(s)	118
Bse8I	GATNNNNATC	2 cut(s)	214, 453
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	3 cut(s)	40, 46, 454
BseJI	GATNNNNATC	2 cut(s)	214, 453
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMII	CTCAG	2 cut(s)	132, 227
BseNI	ACTGG	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	419
BshFI	GGCC	2 cut(s)	330, 431
BshNI	GGYRCC	1 cut(s)	317
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	1 cut(s)	291
BsmFI	GGGAC	1 cut(s)	385
BsnI	GGCC	2 cut(s)	330, 431
Bsp143I	GATC	2 cut(s)	141, 209
BspANI	GGCC	2 cut(s)	330, 431
BspCNI	CTCAG	2 cut(s)	131, 228
BspLI	GGNNCC	4 cut(s)	124, 211, 319, 432
BspPI	GGATC	2 cut(s)	204, 217
BspT107I	GGYRCC	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	2 cut(s)	141, 209
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	294
BstDEI	CTNAG	3 cut(s)	118, 236, 440
BstF5I	GGATG	3 cut(s)	40, 46, 454
BstKTI	GATC	2 cut(s)	144, 212
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	2 cut(s)	141, 209
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	419
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
Bsu36I	CCTNAGG	1 cut(s)	118
BsuRI	GGCC	2 cut(s)	330, 431
BtsCI	GGATG	3 cut(s)	40, 46, 454
BtsIMutI	CAGTG	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	430
CviAII	CATG	1 cut(s)	314
CviJI	RGCY	6 cut(s)	66, 78, 259, 311, 330, 431
CviKI_1	RGCY	6 cut(s)	66, 78, 259, 311, 330, 431
DdeI	CTNAG	3 cut(s)	118, 236, 440
DpnI	GATC	2 cut(s)	143, 211
DpnII	GATC	2 cut(s)	141, 209
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco81I	CCTNAGG	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	330
FaeI	CATG	1 cut(s)	317
FaiI	YATR	2 cut(s)	29, 315
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	1 cut(s)	313
Fnu4HI	GCNGC	1 cut(s)	408
FokI	GGATG	3 cut(s)	47, 53, 461
Fsp4HI	GCNGC	1 cut(s)	408
FspBI	CTAG	1 cut(s)	458
GluI	GCNGC	1 cut(s)	408
HaeIII	GGCC	2 cut(s)	330, 431
Hin1II	CATG	1 cut(s)	317
HinfI	GANTC	2 cut(s)	101, 232
Hpy188I	TCNGA	6 cut(s)	72, 106, 141, 183, 237, 267
Hpy188III	TCNNGA	2 cut(s)	94, 219
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	2 cut(s)	244, 407
HpyF3I	CTNAG	3 cut(s)	118, 236, 440
Hsp92II	CATG	1 cut(s)	317
Kzo9I	GATC	2 cut(s)	141, 209
LpnPI	CCDG	5 cut(s)	59, 105, 177, 317, 344
Lsp1109I	GCAGC	1 cut(s)	419
MaeI	CTAG	1 cut(s)	458
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	2 cut(s)	143, 211
MboI	GATC	2 cut(s)	141, 209
MboII	GAAGA	5 cut(s)	16, 68, 144, 281, 368
MfeI	CAATTG	2 cut(s)	366, 402
MflI	RGATCY	1 cut(s)	209
MluCI	AATT	5 cut(s)	168, 346, 366, 377, 402
MlyI	GAGTC	1 cut(s)	226
MnlI	CCTC	6 cut(s)	31, 78, 100, 127, 402, 412
MseI	TTAA	1 cut(s)	276
MspR9I	CCNGG	1 cut(s)	332
MunI	CAATTG	2 cut(s)	366, 402
MvaI	CCWGG	1 cut(s)	332
NdeII	GATC	2 cut(s)	141, 209
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	4 cut(s)	124, 211, 319, 432
PfeI	GAWTC	1 cut(s)	101
PflMI	CCANNNNNTGG	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	409
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	4 cut(s)	124, 211, 319, 432
PspPI	GGNCC	1 cut(s)	430
PsuI	RGATCY	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	2 cut(s)	141, 209
Sau96I	GGNCC	1 cut(s)	430
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	332
SetI	ASST	6 cut(s)	80, 124, 131, 166, 261, 313
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	5 cut(s)	168, 346, 366, 377, 402
SspMI	CTAG	1 cut(s)	458
StyD4I	CCNGG	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	473
TasI	AATT	5 cut(s)	168, 346, 366, 377, 402
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	1 cut(s)	18
TseI	GCWGC	1 cut(s)	407
TspDTI	ATGAA	2 cut(s)	17, 465
TspRI	CASTG	1 cut(s)	18
Van91I	CCANNNNNTGG	1 cut(s)	368
XapI	RAATTY	1 cut(s)	346
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XspI	CTAG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.