Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002270

Physical Location & Seq

Genomic Coordinates Reverse (-)

23822355 .. 23823684

Gene Structure 1330 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1101700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCTGATGAAGAGGAAGAACATGGAAAAGACGAAAATGAGAAAAAGAGAAAACCGTGTACAATACCGTTGTAATATGATTGCATTTTTTAACACAATGCGGCGAGTTAAGAGACACTTGACTGAAAGACACTTGGAGTTGCTTCAACAAACTCCATTTTGGCCATTAATATCAGCATTTTACAGAGGTGTGATTTCTATAGATCAATGCAAGAAATCCGACAATGACATCTGCAACATCATCAAGTGCTACAACTACAGAACAATGAGTTTTGACTTTGGTAGCACATCTGCATCATTGACAACCGAAGACATTGCTGAAATTTTGGGAATTCCACAAGAAGGTCAGGAAGCAGTAGAATTAAAAGGATTAAGGAACTACAAATCAGATTTTACCAAAAGATATTTCAAGGTAAAAACAGTGTCAAAAAAATTGGTGGAGGATGCTTTGGAAGAAGCGATAAAAGGGAAGAGAGAAGCAGATGTAGAGGACGTCGTACGCCTGATTGTACTAGAACTATGTGTTACATTCTTATTATGCAGCTCAAGCACCGAAACTTCATGGAATATCGTCAAATATTGTGAAGATTTAGAAAATATTTCAAGATATTCATGGGCAAAAGCAGTGGCTGACCACCTACACAAGTCACTGGAAAAGTCGACCAGAACATTTAAGCCATATTCTGTTCATGGATGCGTGGTTGTCATAATGGTAATTGGCATACTCTTGGTTCTTATAGTATCCTGCCAATGCAAGAGTACCGCGGAATGTGATTGTAATTGTTTTTGTCCTGACAGCTTTGGTTGTGTGAGAGAACAAACCTCATACAACCAATCAATGGAAGGGAGGGACATAAACCAGCTATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 PMD

Protein Analysis

290

Amino Acids

33.41

Weight (kDa)

8.64

Isoelectric Point (pI)

38.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	70 - 232	1.6e-06	Plant mobile domain
DUF1985	PF09331	88 - 215	7.4e-07	Domain of unknown function (DUF1985)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04060
malus_domestica	MD06G1101600.v1.1 MD06G1101700.v1.1 MD06G1101900.v1.1 MD14G1121200.v1.1
prunus_persica	Prupe.5G115000_v2.0.a1 Prupe.5G115000_v2.0.a1 Prupe.5G115000_v2.0.a1
pyrus_communis	pycom06g09680
rosa_chinensis	RchiOBHm_Chr5g0001951 RchiOBHm_Chr7g0195461
rosa_laevigata	RLG00000002439 RLG00000004119 RLG00000022620 RLG00000028643 RLG00000028651 RLG00000032833 RLG00000033240
rosa_multiflora	Rmu_sc0000317.1_g000011 Rmu_sc0018163.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094000 Rroxscaffold_3G00260460 Rroxscaffold_5G00357160
rosa_rugosa	Rorug02G0433400 Rorug07G0023400
rosa_samantha	Rh2AG537600 Rh2BG632300 Rh2DG488700 Rh2DG645100 Rh3BG060600 Rh3CG059400 Rh6AG052600 Rh6AG097200 Rh6CG084100 Rh6CG182500 Rh6DG080300 Rh6DG173900 Rh7AG150900 Rh7BG152600 Rh7CG156100 Rh7CG185200 Rh7DG151900
rosa_wichuraiana	Rw7G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	495
AccB7I	CCANNNNNTGG	1 cut(s)	838
AccI	GTMKAC	1 cut(s)	659
AccII	CGCG	1 cut(s)	764
AciI	CCGC	3 cut(s)	100, 762, 764
AcoI	YGGCCR	1 cut(s)	161
AcsI	RAATTY	2 cut(s)	321, 330
AcyI	GRCGYC	1 cut(s)	492
AfaI	GTAC	4 cut(s)	60, 498, 510, 760
AfiI	CCNNNNNNNGG	2 cut(s)	341, 838
AgsI	TTSAA	3 cut(s)	146, 409, 603
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AluBI	AGCT	3 cut(s)	543, 798, 862
AluI	AGCT	3 cut(s)	543, 798, 862
Alw26I	GTCTC	1 cut(s)	106
AlwNI	CAGNNNCTG	1 cut(s)	629
AoxI	GGCC	1 cut(s)	161
ApeKI	GCWGC	1 cut(s)	540
ApoI	RAATTY	2 cut(s)	321, 330
AseI	ATTAAT	1 cut(s)	167
BalI	TGGCCA	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	552
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BciVI	GTATCC	1 cut(s)	751
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	512
BfmI	CTRYAG	2 cut(s)	198, 256
BfuI	GTATCC	1 cut(s)	751
BisI	GCNGC	2 cut(s)	101, 541
BlsI	GCNGC	2 cut(s)	102, 542
BmsI	GCATC	3 cut(s)	302, 433, 683
BpiI	GAAGAC	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	529
BsaHI	GRCGYC	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	762
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 838
Bse1I	ACTGG	1 cut(s)	654
Bse3DI	GCAATG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	762
BseGI	GGATG	2 cut(s)	448, 698
BseLI	CCNNNNNNNGG	2 cut(s)	341, 838
BseMI	GCAATG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	654
BseXI	GCAGC	1 cut(s)	552
Bsh1236I	CGCG	1 cut(s)	764
BshFI	GGCC	1 cut(s)	163
BsiWI	CGTACG	1 cut(s)	496
BslFI	GGGAC	1 cut(s)	863
BslI	CCNNNNNNNGG	2 cut(s)	341, 838
BsmAI	GTCTC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	863
BsnI	GGCC	1 cut(s)	163
Bsp1407I	TGTACA	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	3 cut(s)	100, 762, 764
BspANI	GGCC	1 cut(s)	163
BspFNI	CGCG	1 cut(s)	764
BsrDI	GCAATG	1 cut(s)	312
BsrGI	TGTACA	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	654
BssECI	CCNNGG	1 cut(s)	762
BssMI	GATC	1 cut(s)	202
BssNI	GRCGYC	1 cut(s)	492
Bst4CI	ACNGT	3 cut(s)	56, 68, 421
Bst6I	CTCTTC	2 cut(s)	5, 464
BstACI	GRCGYC	1 cut(s)	492
BstAUI	TGTACA	1 cut(s)	58
BstDSI	CCRYGG	1 cut(s)	762
BstF5I	GGATG	2 cut(s)	448, 698
BstFNI	CGCG	1 cut(s)	764
BstKTI	GATC	1 cut(s)	205
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	1 cut(s)	546
BstSFI	CTRYAG	2 cut(s)	198, 256
BstUI	CGCG	1 cut(s)	764
BstV1I	GCAGC	1 cut(s)	552
BstV2I	GAAGAC	1 cut(s)	315
BsuI	GTATCC	1 cut(s)	751
BsuRI	GGCC	1 cut(s)	163
BtgI	CCRYGG	1 cut(s)	762
BtsCI	GGATG	2 cut(s)	448, 698
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	3 cut(s)	426, 630, 647
CaiI	CAGNNNCTG	1 cut(s)	629
Cfr42I	CCGCGG	1 cut(s)	765
Csp6I	GTAC	4 cut(s)	59, 497, 509, 759
CspCI	CAANNNNNGTGG	2 cut(s)	606, 641
CviAII	CATG	4 cut(s)	22, 561, 612, 689
CviJI	RGCY	6 cut(s)	163, 543, 629, 676, 798, 862
CviKI_1	RGCY	6 cut(s)	163, 543, 629, 676, 798, 862
CviQI	GTAC	4 cut(s)	59, 497, 509, 759
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	161
Eam1104I	CTCTTC	2 cut(s)	5, 464
EarI	CTCTTC	2 cut(s)	5, 464
EcoRI	GAATTC	1 cut(s)	330
FaeI	CATG	4 cut(s)	25, 564, 615, 692
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	1 cut(s)	863
FatI	CATG	4 cut(s)	21, 560, 611, 688
FblI	GTMKAC	1 cut(s)	659
Fnu4HI	GCNGC	2 cut(s)	101, 541
FokI	GGATG	2 cut(s)	455, 705
Fsp4HI	GCNGC	2 cut(s)	101, 541
FspBI	CTAG	1 cut(s)	512
GluI	GCNGC	2 cut(s)	101, 541
HaeIII	GGCC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	492
Hin1II	CATG	4 cut(s)	25, 564, 615, 692
HincII	GTYRAC	1 cut(s)	660
HindII	GTYRAC	1 cut(s)	660
Hpy166II	GTNNAC	2 cut(s)	59, 660
Hpy188I	TCNGA	2 cut(s)	220, 388
Hpy188III	TCNNGA	4 cut(s)	347, 603, 791, 867
Hpy8I	GTNNAC	2 cut(s)	59, 660
Hpy99I	CGWCG	1 cut(s)	497
HpyAV	CCTTC	2 cut(s)	335, 836
HpyCH4III	ACNGT	3 cut(s)	56, 68, 421
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	6 cut(s)	83, 210, 234, 293, 540, 753
HpyF10VI	GCNNNNNNNGC	1 cut(s)	546
HpySE526I	ACGT	1 cut(s)	492
Hsp92I	GRCGYC	1 cut(s)	492
Hsp92II	CATG	4 cut(s)	25, 564, 615, 692
KspI	CCGCGG	1 cut(s)	765
Kzo9I	GATC	1 cut(s)	202
LpnPI	CCDG	6 cut(s)	332, 515, 635, 676, 757, 804
Lsp1109I	GCAGC	1 cut(s)	552
LweI	GCATC	3 cut(s)	302, 433, 683
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	2 cut(s)	523, 645
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	6 cut(s)	22, 28, 320, 464, 481, 596
MlsI	TGGCCA	1 cut(s)	163
MluCI	AATT	6 cut(s)	321, 330, 359, 431, 714, 778
MluNI	TGGCCA	1 cut(s)	163
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	6 cut(s)	6, 179, 433, 481, 832, 840
Mox20I	TGGCCA	1 cut(s)	163
MscI	TGGCCA	1 cut(s)	163
MseI	TTAA	6 cut(s)	90, 108, 167, 362, 371, 672
Msp20I	TGGCCA	1 cut(s)	163
MspA1I	CMGCKG	1 cut(s)	764
MvnI	CGCG	1 cut(s)	764
MwoI	GCNNNNNNNGC	1 cut(s)	546
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	4 cut(s)	25, 564, 615, 692
NmuCI	GTSAC	1 cut(s)	645
Pfl23II	CGTACG	1 cut(s)	496
PflMI	CCANNNNNTGG	1 cut(s)	838
PkrI	GCNGC	2 cut(s)	102, 542
PshBI	ATTAAT	1 cut(s)	167
PspLI	CGTACG	1 cut(s)	496
PstNI	CAGNNNCTG	1 cut(s)	629
RsaI	GTAC	4 cut(s)	60, 498, 510, 760
RsaNI	GTAC	4 cut(s)	59, 497, 509, 759
SacII	CCGCGG	1 cut(s)	765
SalI	GTCGAC	1 cut(s)	658
SaqAI	TTAA	6 cut(s)	90, 108, 167, 362, 371, 672
SatI	GCNGC	2 cut(s)	101, 541
Sau3AI	GATC	1 cut(s)	202
SetI	ASST	9 cut(s)	190, 346, 414, 495, 545, 639, 800, 824, 864
SfaNI	GCATC	3 cut(s)	302, 433, 683
SfcI	CTRYAG	2 cut(s)	198, 256
Sfr303I	CCGCGG	1 cut(s)	765
SgrBI	CCGCGG	1 cut(s)	765
SmlI	CTYRAG	1 cut(s)	544
SmoI	CTYRAG	1 cut(s)	544
Sse9I	AATT	6 cut(s)	321, 330, 359, 431, 714, 778
SsiI	CCGC	3 cut(s)	100, 762, 764
SspI	AATATT	2 cut(s)	578, 598
SspMI	CTAG	1 cut(s)	512
TaaI	ACNGT	3 cut(s)	56, 68, 421
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	1 cut(s)	659
TasI	AATT	6 cut(s)	321, 330, 359, 431, 714, 778
TatI	WGTACW	2 cut(s)	58, 508
TauI	GCSGC	1 cut(s)	103
Tru1I	TTAA	6 cut(s)	90, 108, 167, 362, 371, 672
Tru9I	TTAA	6 cut(s)	90, 108, 167, 362, 371, 672
TscAI	CASTG	3 cut(s)	426, 630, 654
TseFI	GTSAC	1 cut(s)	645
TseI	GCWGC	1 cut(s)	540
Tsp45I	GTSAC	1 cut(s)	645
TspDTI	ATGAA	4 cut(s)	23, 549, 600, 677
TspRI	CASTG	3 cut(s)	426, 630, 654
Van91I	CCANNNNNTGG	1 cut(s)	838
VspI	ATTAAT	1 cut(s)	167
XapI	RAATTY	2 cut(s)	321, 330
XmiI	GTMKAC	1 cut(s)	659
XspI	CTAG	1 cut(s)	512
ZraI	GACGTC	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.