Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002270

Physical Location & Seq

Genomic Coordinates Reverse (-)

19567304 .. 19569183

Gene Structure 1880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1121200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGAGGTCTGCATATTTCAGGTTACAGACCGGGACCCAAATAAGATGAAGAACAAGAACATGGAAAACAAGAAAATGGAAAAGAGGAATATGGGAAGTTGGACGAGGGTAAGAGGAGATCAGGTGCGATACCGCTGTAATATGATATCATTTTTTAATCCGATGCAGCGAGTTAAGGAACACTTGACTGAAGAGCATTTGGAGTTGCTTCAACAAACTCCATTTCGGCCGTTAATATCGGCATTCTATAATGGTCTGATTTCTGAAGACCAATGCAAGAAATCGAAAGCTGGCATTGGAAACATCATGAAGTGCTACAACGCCGAAACAATGAGTTTTGAGTTTGGTACTACATCTGCATCGTTGACAACTGAAGACGTTGCTGAAATTTTGGGGCTTCCACGGGAAGGTCAAGAAGTACAATTAAAAGGAACAACGAAACACATATCAGATTTTACCAAAAGGTGTTTCGAGGAAGAAACAATATTGTACGAGAAGTTGGTGGATAATGCCTTGGAAGCAGCAATAAAAGGGAAGAGAGAAACAGATGCAGAGGATGTTGCACGCCTGATTCTAACAGAACTTTGCGCTACCTTCTTATTGTGTAACACAAACCAAGTCGTCTCATGGAATTTAGTCGAGTATTGTGAAGATTTAGAAAATCTTTCAAGATATTCATGGGCAAAAGCAGTGGCGGACCTTCTACACGAATCATTGGGAAAACGGACCAGGAGGTCCGAGGGATATTCTCTTCCTGGATGTGTGGCTGTCATAACGGTAACAATTGTGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 PMD

Protein Analysis

265

Amino Acids

30.2

Weight (kDa)

5.94

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	93 - 245	5.4e-09	Plant mobile domain
DUF1985	PF09331	104 - 236	4e-06	Domain of unknown function (DUF1985)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04060
malus_domestica	MD06G1101600.v1.1 MD06G1101700.v1.1 MD06G1101900.v1.1 MD14G1121200.v1.1
prunus_persica	Prupe.5G115000_v2.0.a1 Prupe.5G115000_v2.0.a1 Prupe.5G115000_v2.0.a1
pyrus_communis	pycom06g09680
rosa_chinensis	RchiOBHm_Chr5g0001951 RchiOBHm_Chr7g0195461
rosa_laevigata	RLG00000002439 RLG00000004119 RLG00000022620 RLG00000028643 RLG00000028651 RLG00000032833 RLG00000033240
rosa_multiflora	Rmu_sc0000317.1_g000011 Rmu_sc0018163.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094000 Rroxscaffold_3G00260460 Rroxscaffold_5G00357160
rosa_rugosa	Rorug02G0433400 Rorug07G0023400
rosa_samantha	Rh2AG537600 Rh2BG632300 Rh2DG488700 Rh2DG645100 Rh3BG060600 Rh3CG059400 Rh6AG052600 Rh6AG097200 Rh6CG084100 Rh6CG182500 Rh6DG080300 Rh6DG173900 Rh7AG150900 Rh7BG152600 Rh7CG156100 Rh7CG185200 Rh7DG151900
rosa_wichuraiana	Rw7G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	733
AciI	CCGC	2 cut(s)	133, 695
AcoI	YGGCCR	1 cut(s)	227
AcsI	RAATTY	2 cut(s)	387, 631
AcuI	CTGAAG	3 cut(s)	210, 285, 393
AfaI	GTAC	3 cut(s)	349, 420, 491
AfiI	CCNNNNNNNGG	1 cut(s)	407
AgsI	TTSAA	2 cut(s)	212, 669
AjnI	CCWGG	2 cut(s)	728, 754
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	1 cut(s)	290
AluI	AGCT	1 cut(s)	290
Alw26I	GTCTC	1 cut(s)	628
AoxI	GGCC	1 cut(s)	227
ApeKI	GCWGC	2 cut(s)	166, 521
ApoI	RAATTY	2 cut(s)	387, 631
AspLEI	GCGC	1 cut(s)	590
AspS9I	GGNCC	4 cut(s)	34, 697, 726, 735
AsuC2I	CCSGG	1 cut(s)	32
AvaII	GGWCC	4 cut(s)	34, 697, 726, 735
BaeI	ACNNNNGTAYC	2 cut(s)	121, 154
BbsI	GAAGAC	2 cut(s)	273, 381
BbvI	GCAGC	2 cut(s)	178, 533
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	2 cut(s)	730, 756
BcnI	CCSGG	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	628
BisI	GCNGC	2 cut(s)	167, 522
BlsI	GCNGC	2 cut(s)	168, 523
Bme1390I	CCNGG	3 cut(s)	32, 730, 756
Bme18I	GGWCC	4 cut(s)	34, 697, 726, 735
BmgT120I	GGNCC	4 cut(s)	34, 697, 726, 735
BmiI	GGNNCC	2 cut(s)	35, 36
BmrFI	CCNGG	3 cut(s)	32, 730, 756
BmsI	GCATC	3 cut(s)	153, 368, 538
BpiI	GAAGAC	2 cut(s)	273, 381
BpuMI	CCSGG	1 cut(s)	32
BsaJI	CCNNGG	3 cut(s)	401, 513, 738
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
BseBI	CCWGG	2 cut(s)	730, 756
BseDI	CCNNGG	3 cut(s)	401, 513, 738
BseGI	GGATG	2 cut(s)	562, 764
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseRI	GAGGAG	1 cut(s)	129
BseX3I	CGGCCG	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	178, 533
Bsh1285I	CGRYCG	1 cut(s)	230
BshFI	GGCC	1 cut(s)	229
BsiEI	CGRYCG	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	31
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	407
BsmAI	GTCTC	1 cut(s)	628
BsmBI	CGTCTC	1 cut(s)	628
BsmFI	GGGAC	1 cut(s)	47
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	118
BspACI	CCGC	2 cut(s)	133, 695
BspANI	GGCC	1 cut(s)	229
BspHI	TCATGA	1 cut(s)	306
BspLI	GGNNCC	2 cut(s)	35, 36
BspQI	GCTCTTC	1 cut(s)	186
BssECI	CCNNGG	3 cut(s)	401, 513, 738
BssMI	GATC	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	513
Bst2UI	CCWGG	2 cut(s)	730, 756
Bst4CI	ACNGT	1 cut(s)	778
Bst6I	CTCTTC	3 cut(s)	186, 530, 756
BstC8I	GCNNGC	2 cut(s)	292, 565
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	2 cut(s)	562, 764
BstHHI	GCGC	1 cut(s)	590
BstKTI	GATC	1 cut(s)	121
BstMAI	GTCTC	1 cut(s)	628
BstMBI	GATC	1 cut(s)	118
BstMCI	CGRYCG	1 cut(s)	230
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstNI	CCWGG	2 cut(s)	730, 756
BstSCI	CCNGG	3 cut(s)	30, 728, 754
BstV1I	GCAGC	2 cut(s)	178, 533
BstV2I	GAAGAC	2 cut(s)	273, 381
BstZI	CGGCCG	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	229
BtgI	CCRYGG	1 cut(s)	401
BtsCI	GGATG	2 cut(s)	562, 764
BtsI	GCAGTG	1 cut(s)	696
BtsIMutI	CAGTG	1 cut(s)	696
Cac8I	GCNNGC	2 cut(s)	292, 565
CciI	TCATGA	1 cut(s)	306
CfoI	GCGC	1 cut(s)	590
Cfr13I	GGNCC	4 cut(s)	34, 697, 726, 735
Csp6I	GTAC	3 cut(s)	348, 419, 490
CspCI	CAANNNNNGTGG	2 cut(s)	672, 707
CviAII	CATG	4 cut(s)	61, 307, 627, 678
CviJI	RGCY	4 cut(s)	229, 290, 397, 767
CviKI_1	RGCY	4 cut(s)	229, 290, 397, 767
CviQI	GTAC	3 cut(s)	348, 419, 490
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
DrdI	GACNNNNNNGTC	1 cut(s)	733
DseDI	GACNNNNNNGTC	1 cut(s)	733
EaeI	YGGCCR	1 cut(s)	227
EagI	CGGCCG	1 cut(s)	227
Eam1104I	CTCTTC	3 cut(s)	186, 530, 756
EarI	CTCTTC	3 cut(s)	186, 530, 756
EciI	GGCGGA	1 cut(s)	710
EclXI	CGGCCG	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	513
Eco32I	GATATC	1 cut(s)	147
Eco47I	GGWCC	4 cut(s)	34, 697, 726, 735
Eco52I	CGGCCG	1 cut(s)	227
Eco57I	CTGAAG	3 cut(s)	210, 285, 393
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRII	CCWGG	2 cut(s)	728, 754
EcoRV	GATATC	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	513
Esp3I	CGTCTC	1 cut(s)	628
FaeI	CATG	4 cut(s)	64, 310, 630, 681
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	4 cut(s)	60, 306, 626, 677
Fnu4HI	GCNGC	2 cut(s)	167, 522
FokI	GGATG	2 cut(s)	569, 771
Fsp4HI	GCNGC	2 cut(s)	167, 522
GlaI	GCGC	1 cut(s)	589
GluI	GCNGC	2 cut(s)	167, 522
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	1 cut(s)	31
HhaI	GCGC	1 cut(s)	590
Hin1II	CATG	4 cut(s)	64, 310, 630, 681
Hin6I	GCGC	1 cut(s)	588
HinP1I	GCGC	1 cut(s)	588
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HinfI	GANTC	2 cut(s)	571, 710
HpaII	CCGG	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188I	TCNGA	5 cut(s)	162, 258, 265, 451, 739
Hpy188III	TCNNGA	3 cut(s)	307, 413, 669
Hpy8I	GTNNAC	1 cut(s)	366
HpyAV	CCTTC	3 cut(s)	401, 604, 710
HpyCH4III	ACNGT	1 cut(s)	778
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	6 cut(s)	12, 166, 276, 359, 551, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	4 cut(s)	64, 310, 630, 681
HspAI	GCGC	1 cut(s)	588
KflI	GGGWCCC	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	118
LguI	GCTCTTC	1 cut(s)	186
LpnPI	CCDG	9 cut(s)	5, 44, 107, 276, 581, 715, 741, 742, 768
Lsp1109I	GCAGC	2 cut(s)	178, 533
LweI	GCATC	3 cut(s)	153, 368, 538
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	3 cut(s)	22, 605, 778
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	8 cut(s)	61, 203, 278, 386, 488, 547, 662, 743
MfeI	CAATTG	1 cut(s)	783
MluCI	AATT	4 cut(s)	387, 422, 631, 783
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	7 cut(s)	78, 99, 107, 466, 547, 726, 733
MseI	TTAA	4 cut(s)	156, 174, 233, 425
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	1 cut(s)	31
MspR9I	CCNGG	3 cut(s)	32, 730, 756
MunI	CAATTG	1 cut(s)	783
Mva1269I	GAATGC	1 cut(s)	242
MvaI	CCWGG	2 cut(s)	730, 756
MwoI	GCNNNNNNNGC	1 cut(s)	518
NciI	CCSGG	1 cut(s)	32
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	4 cut(s)	64, 310, 630, 681
NlaIV	GGNNCC	2 cut(s)	35, 36
PagI	TCATGA	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	186
PctI	GAATGC	1 cut(s)	242
PfeI	GAWTC	2 cut(s)	571, 710
PfoI	TCCNGGA	1 cut(s)	754
PkrI	GCNGC	2 cut(s)	168, 523
PpuMI	RGGWCCY	1 cut(s)	34
Psp5II	RGGWCCY	1 cut(s)	34
Psp6I	CCWGG	2 cut(s)	728, 754
PspGI	CCWGG	2 cut(s)	728, 754
PspN4I	GGNNCC	2 cut(s)	35, 36
PspPI	GGNCC	4 cut(s)	34, 697, 726, 735
PspPPI	RGGWCCY	1 cut(s)	34
RsaI	GTAC	3 cut(s)	349, 420, 491
RsaNI	GTAC	3 cut(s)	348, 419, 490
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	4 cut(s)	156, 174, 233, 425
SatI	GCNGC	2 cut(s)	167, 522
Sau3AI	GATC	1 cut(s)	118
Sau96I	GGNCC	4 cut(s)	34, 697, 726, 735
ScrFI	CCNGG	3 cut(s)	32, 730, 756
SfaNI	GCATC	3 cut(s)	153, 368, 538
SinI	GGWCC	4 cut(s)	34, 697, 726, 735
Sse9I	AATT	4 cut(s)	387, 422, 631, 783
SsiI	CCGC	2 cut(s)	133, 695
SspI	AATATT	1 cut(s)	486
StyD4I	CCNGG	3 cut(s)	30, 728, 754
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	1 cut(s)	778
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	3 cut(s)	284, 471, 639
TasI	AATT	4 cut(s)	387, 422, 631, 783
TatI	WGTACW	1 cut(s)	418
TfiI	GAWTC	2 cut(s)	571, 710
Tru1I	TTAA	4 cut(s)	156, 174, 233, 425
Tru9I	TTAA	4 cut(s)	156, 174, 233, 425
TscAI	CASTG	1 cut(s)	696
TseI	GCWGC	2 cut(s)	166, 521
TspDTI	ATGAA	3 cut(s)	62, 323, 666
TspGWI	ACGGA	1 cut(s)	739
TspRI	CASTG	1 cut(s)	696
VpaK11BI	GGWCC	4 cut(s)	34, 697, 726, 735
XapI	RAATTY	2 cut(s)	387, 631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.