Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002270

Physical Location & Seq

Genomic Coordinates Reverse (-)

87179719 .. 87181383

Gene Structure 1665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG645100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCAGAGGACGGCAGTTCAATAGTTGCAGAGTTGGACCGAGCGGCAGAGGGATTGTCATCCAGAGAAGCGGAGCTGAGGCAAGAGATTGAGCAACACAAGCACAATAAGGCGGTGCTGGAGGAGAAGCACCAATTCGAGATTCTAGAGAGGCTGAAGGTGAAGGACGAGCTCCGGAGCCAAGCTGCTGATAATGGAGCAGTTCCCGGAGACCGCCGCCTCCATCGTCTCCTTCAAGGTCGACTCCGACGTCATGTTCCTCGACGGCCGCGACTTCCTCAAAACCGACGCCAAGATCGGCGACGACGGCAAGCTCCACGTCAAGGTGTGGAAGTCCAACGCGTCCAGACGGTCGCTCTCGGCAATGACTCCTTGGGCCGTCCAACCTCACCGGAGCGTGAAGCAGTGAGAGAGAGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 PMD

Protein Analysis

140

Amino Acids

16.27

Weight (kDa)

10.83

Isoelectric Point (pI)

88.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04060
malus_domestica	MD06G1101600.v1.1 MD06G1101700.v1.1 MD06G1101900.v1.1 MD14G1121200.v1.1
prunus_persica	Prupe.5G115000_v2.0.a1 Prupe.5G115000_v2.0.a1 Prupe.5G115000_v2.0.a1
pyrus_communis	pycom06g09680
rosa_chinensis	RchiOBHm_Chr5g0001951 RchiOBHm_Chr7g0195461
rosa_laevigata	RLG00000002439 RLG00000004119 RLG00000022620 RLG00000028643 RLG00000028651 RLG00000032833 RLG00000033240
rosa_multiflora	Rmu_sc0000317.1_g000011 Rmu_sc0018163.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094000 Rroxscaffold_3G00260460 Rroxscaffold_5G00357160
rosa_rugosa	Rorug02G0433400 Rorug07G0023400
rosa_samantha	Rh2AG537600 Rh2BG632300 Rh2DG488700 Rh2DG645100 Rh3BG060600 Rh3CG059400 Rh6AG052600 Rh6AG097200 Rh6CG084100 Rh6CG182500 Rh6DG080300 Rh6DG173900 Rh7AG150900 Rh7BG152600 Rh7CG156100 Rh7CG185200 Rh7DG151900
rosa_wichuraiana	Rw7G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	249
AatII	GACGTC	1 cut(s)	253
AccBSI	CCGCTC	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	241
AccII	CGCG	2 cut(s)	271, 342
AccIII	TCCGGA	1 cut(s)	174
AciI	CCGC	6 cut(s)	44, 71, 113, 214, 217, 269
AcoI	YGGCCR	1 cut(s)	266
AcuI	CTGAAG	1 cut(s)	176
AcyI	GRCGYC	2 cut(s)	250, 289
AfiI	CCNNNNNNNGG	1 cut(s)	323
AflIII	ACRYGT	1 cut(s)	340
AgsI	TTSAA	2 cut(s)	21, 236
AjiI	CACGTC	1 cut(s)	320
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AluBI	AGCT	4 cut(s)	76, 172, 185, 314
AluI	AGCT	4 cut(s)	76, 172, 185, 314
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	2 cut(s)	204, 233
Aor13HI	TCCGGA	1 cut(s)	174
AoxI	GGCC	2 cut(s)	266, 376
ApeKI	GCWGC	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	37, 376
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	2 cut(s)	172, 381
AvaII	GGWCC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	174
BbvCI	CCTCAGC	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	231
BceAI	ACGGC	4 cut(s)	28, 281, 323, 363
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	2 cut(s)	204, 233
BfaI	CTAG	1 cut(s)	146
BisI	GCNGC	4 cut(s)	45, 186, 217, 269
BlsI	GCNGC	4 cut(s)	46, 187, 218, 270
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	37
BmgBI	CACGTC	1 cut(s)	320
BmgT120I	GGNCC	2 cut(s)	37, 376
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	207
BpmI	CTGGAG	1 cut(s)	140
Bpu10I	CCTNAGC	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	207
BsaBI	GATNNNNATC	1 cut(s)	58
BsaHI	GRCGYC	2 cut(s)	250, 289
BsaI	GGTCTC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	372
BsaWI	WCCGGW	2 cut(s)	174, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	370
Bse8I	GATNNNNATC	1 cut(s)	58
BseAI	TCCGGA	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	59
BseJI	GATNNNNATC	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMI	GCAATG	1 cut(s)	370
BseMII	CTCAG	1 cut(s)	68
BseRI	GAGGAG	1 cut(s)	137
BseX3I	CGGCCG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	172
Bsh1236I	CGCG	2 cut(s)	271, 342
Bsh1285I	CGRYCG	2 cut(s)	269, 354
BshFI	GGCC	2 cut(s)	268, 378
BsiEI	CGRYCG	2 cut(s)	269, 354
BsiHKAI	GWGCWC	1 cut(s)	174
BsiSI	CCGG	3 cut(s)	175, 207, 392
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	2 cut(s)	204, 233
BsmBI	CGTCTC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	268, 378
Bso31I	GGTCTC	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp13I	TCCGGA	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	295
BspACI	CCGC	6 cut(s)	44, 71, 113, 214, 217, 269
BspANI	GGCC	2 cut(s)	268, 378
BspCNI	CTCAG	1 cut(s)	69
BspEI	TCCGGA	1 cut(s)	174
BspFNI	CGCG	2 cut(s)	271, 342
BspLI	GGNNCC	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	204
BsrBI	CCGCTC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	1 cut(s)	295
BssNI	GRCGYC	2 cut(s)	250, 289
BssT1I	CCWWGG	1 cut(s)	372
Bst4CI	ACNGT	1 cut(s)	352
BstACI	GRCGYC	2 cut(s)	250, 289
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	59
BstFNI	CGCG	2 cut(s)	271, 342
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	2 cut(s)	204, 233
BstMBI	GATC	1 cut(s)	295
BstMCI	CGRYCG	2 cut(s)	269, 354
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 307
BstSCI	CCNGG	1 cut(s)	205
BstUI	CGCG	2 cut(s)	271, 342
BstV1I	GCAGC	1 cut(s)	172
BstZI	CGGCCG	1 cut(s)	266
BsuRI	GGCC	2 cut(s)	268, 378
BtrI	CACGTC	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	59
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	411
Cac8I	GCNNGC	1 cut(s)	312
Cfr13I	GGNCC	2 cut(s)	37, 376
CseI	GACGC	2 cut(s)	297, 331
CviAII	CATG	1 cut(s)	254
CviJI	RGCY	8 cut(s)	76, 154, 172, 180, 185, 268, 314, 378
CviKI_1	RGCY	8 cut(s)	76, 154, 172, 180, 185, 268, 314, 378
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
DrdI	GACNNNNNNGTC	1 cut(s)	249
DseDI	GACNNNNNNGTC	1 cut(s)	249
EaeI	YGGCCR	1 cut(s)	266
EagI	CGGCCG	1 cut(s)	266
Ecl136II	GAGCTC	1 cut(s)	172
EclXI	CGGCCG	1 cut(s)	266
Eco130I	CCWWGG	1 cut(s)	372
Eco24I	GRGCYC	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	37
Eco52I	CGGCCG	1 cut(s)	266
Eco53kI	GAGCTC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	372
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	372
Esp3I	CGTCTC	1 cut(s)	233
FaeI	CATG	1 cut(s)	257
FaiI	YATR	1 cut(s)	255
FatI	CATG	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	241
Fnu4HI	GCNGC	4 cut(s)	45, 186, 217, 269
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	4 cut(s)	45, 186, 217, 269
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	4 cut(s)	45, 186, 217, 269
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	2 cut(s)	268, 378
HapII	CCGG	3 cut(s)	175, 207, 392
HgaI	GACGC	2 cut(s)	297, 331
Hin1I	GRCGYC	2 cut(s)	250, 289
Hin1II	CATG	1 cut(s)	257
HincII	GTYRAC	1 cut(s)	242
HindII	GTYRAC	1 cut(s)	242
HinfI	GANTC	3 cut(s)	142, 243, 368
HpaII	CCGG	3 cut(s)	175, 207, 392
HphI	GGTGA	2 cut(s)	172, 381
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	248
Hpy188III	TCNNGA	5 cut(s)	63, 139, 146, 175, 346
Hpy8I	GTNNAC	1 cut(s)	242
Hpy99I	CGWCG	5 cut(s)	252, 267, 291, 306, 309
HpyAV	CCTTC	3 cut(s)	151, 157, 242
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4IV	ACGT	2 cut(s)	250, 319
HpyCH4V	TGCA	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 307
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	2 cut(s)	250, 319
Hsp92I	GRCGYC	2 cut(s)	250, 289
Hsp92II	CATG	1 cut(s)	257
Kpn2I	TCCGGA	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	295
LmnI	GCTCC	6 cut(s)	73, 177, 177, 197, 319, 394
LpnPI	CCDG	6 cut(s)	76, 104, 188, 220, 359, 405
Lsp1109I	GCAGC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	2 cut(s)	250, 319
MalI	GATC	1 cut(s)	297
MbiI	CCGCTC	1 cut(s)	44
MboI	GATC	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	1 cut(s)	134
MluI	ACGCGT	1 cut(s)	340
MlyI	GAGTC	2 cut(s)	237, 362
MmeI	TCCRAC	4 cut(s)	15, 271, 361, 407
MnlI	CCTC	8 cut(s)	43, 72, 115, 144, 230, 270, 288, 397
MroI	TCCGGA	1 cut(s)	174
MspI	CCGG	3 cut(s)	175, 207, 392
MspR9I	CCNGG	1 cut(s)	207
MvnI	CGCG	2 cut(s)	271, 342
MwoI	GCNNNNNNNGC	2 cut(s)	100, 307
NciI	CCSGG	1 cut(s)	207
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	1 cut(s)	257
NlaIV	GGNNCC	1 cut(s)	179
NmeAIII	GCCGAG	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	2 cut(s)	247, 268
PfeI	GAWTC	1 cut(s)	142
PfoI	TCCNGGA	1 cut(s)	205
PkrI	GCNGC	4 cut(s)	46, 187, 218, 270
PleI	GAGTC	2 cut(s)	237, 362
PpsI	GAGTC	2 cut(s)	237, 362
Psp124BI	GAGCTC	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	179
PspPI	GGNCC	2 cut(s)	37, 376
SacI	GAGCTC	1 cut(s)	174
SalI	GTCGAC	1 cut(s)	240
SatI	GCNGC	4 cut(s)	45, 186, 217, 269
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	2 cut(s)	37, 376
SchI	GAGTC	2 cut(s)	237, 362
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	1 cut(s)	174
SinI	GGWCC	1 cut(s)	37
Sse9I	AATT	1 cut(s)	134
SsiI	CCGC	6 cut(s)	44, 71, 113, 214, 217, 269
SspMI	CTAG	1 cut(s)	146
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	352
TaiI	ACGT	2 cut(s)	253, 322
TaqI	TCGA	3 cut(s)	138, 241, 262
TaqII	GACCGA	1 cut(s)	54
TasI	AATT	1 cut(s)	134
TauI	GCSGC	3 cut(s)	47, 219, 271
TfiI	GAWTC	1 cut(s)	142
TscAI	CASTG	1 cut(s)	411
TseI	GCWGC	1 cut(s)	185
TspRI	CASTG	1 cut(s)	411
VpaK11BI	GGWCC	1 cut(s)	37
XbaI	TCTAGA	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	241
XspI	CTAG	1 cut(s)	146
ZraI	GACGTC	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.