Rh7CG156100

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002270
Physical Location & Seq
Forward (+)
12807842 .. 12811288
3447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG156100.1

Sequence Viewer

Length: 1626 bp
ATGAAAAAGATGGGGAGGATAAAGAGTGTGAGGAAACAGAAGTATAGAGCCCCAGATCATGTACAATACCGTTGTAATATGCTGGCATTCCTTAAAATAATGCAGAAAGTAAGAGAACGCTTGACTAAAAGCCACTTGGAGTTGCTACACCAAACTCCGTTTTGGCCATTGATATCGGCATTTTACAACGGTTTGATTTCTGAAAATGACTGCAAGAAATCGGAGAGTGACATCAACGACATCATCCAATGCTACAACTCAAACTCAAAGTGTTTTGAGTTTGGTAGCAGATCTGCGTCTTTAACGCCAGAGGACATCTCCGCAATTTTGGGGCTGCCACAAGAAGGTGAAACACTAAGGGTGACAGGGCTGTTTGGAGTCAACAGATACACGTCAGATTTTGTCGAAAGATATTTCAAGGATGAAAAGAGAGTTAAGAAAACATTGGTAGATGATGGTTTGGAGAAAGCGTTACAAGGGAAAAGAGAAACTGATGGAGAAGATGTTGTACGCCTTATTATACTAGAGTTATTCATCACATTCTTATTCTGCAATGCGGGTAGTACTATTGGATGGAAATTAGTCAGGTGCTGTGAAGAGTTAGAAAACATGTCAAGATATTCATGGGCAAAAGCAGTTGCCGACTTTCTAAGCAGCACATTGGAGAAAACGTCTGGGCAGTATGGGCCATATTCTACTGGCGGATGTGTGGTTGTCCTATTGTTTTGGTTGTGTGAGAGAAGTAATCTTATACAACCAGTTGAAGGAAGGGAGACAATTACACCAGCCCTAATAAAATGGAATATCCAGGAGCTACACTTGAAACTGCAACGAATGAAGGACTTTGAAGAACTTGGGCGGAGTTTTGAGGGGGCCAAGGAGAACCAGAAGAGAGATGGAGAAGACAAGGAGGAAGATGGAAATGGAACAGGAGAAAACGAAGAAACACAAGAAGAAGATAGAAGAGAAGAAACTGAAACAGATAGAGGAGGAGAAGAAAGTGTTTCTGATGACATAGTGATTCCATTGGAAGACGAACTTCGAGCTCAAATGTCTCGCTTCCGCCGATCTTCCCCTATTTTGAAAAGGTTGAGCAGAGACAATGAGAACTTGCGAAAAAGAAAAGCAACAAATTTACGGGATAAGGTTCAATATGCGAGGGTGGAAGTTGAAAGAGCTCAAGGAGAAGTGGACAGGCTAGCTGAAAAATTGGAGAGGAAGAAGGAAAAAGCATCAAGATTAAAGAGAAAACTAAAAGAAGAAAAGAAGGAGAAGAGAAAGCTGGAAGAGGAGAATGAAATCTTAAATGCTGAGAAGAGATCATTGCTTGAGTCTGTGACAAAGCTGGTGAAAACACTTGATGCTGAAAGGAAAGCAGTGAGAAACATAGTCAAAGAGAAAGCGGAGGTGATTAAAGAGAACCGACAACTTAAAGATCAGCTCAATCAAGGCAGCTGCACTGCAGCTAAATTGGGAGAAAACACACAAACTCAGGTCTCTCCGGAGCAGTCCTATGTGACAAATTTTGAAATCCGAAAGAGGGCATTAGATCTAGGGTTTGATAATGACAGAGGGTGTGAGAAATATAGGAAATTGGGAGACGATAAAGGAGAGAGAAAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

541

Amino Acids

62.63

Weight (kDa)

8.54

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 67 - 275 3.5e-08 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 1501
AciI CCGC 6 cut(s) 321, 557, 702, 859, 1063, 1403
AcoI YGGCCR 1 cut(s) 164
AcsI RAATTY 2 cut(s) 1132, 1522
AfaI GTAC 3 cut(s) 63, 510, 565
AfiI CCNNNNNNNGG 3 cut(s) 344, 764, 1540
AflIII ACRYGT 2 cut(s) 390, 609
AgsI TTSAA 8 cut(s) 418, 764, 823, 848, 1084, 1151, 1172, 1529
AjiI CACGTC 1 cut(s) 393
AjnI CCWGG 1 cut(s) 807
AluBI AGCT 9 cut(s) 814, 1046, 1178, 1202, 1282, 1345, 1441, 1455, 1466
AluI AGCT 9 cut(s) 814, 1046, 1178, 1202, 1282, 1345, 1441, 1455, 1466
Alw21I GWGCWC 2 cut(s) 1048, 1180
Alw26I GTCTC 5 cut(s) 767, 1059, 1092, 1501, 1593
AlwNI CAGNNNCTG 1 cut(s) 591
Aor13HI TCCGGA 1 cut(s) 1501
AoxI GGCC 3 cut(s) 164, 686, 873
ApeKI GCWGC 5 cut(s) 334, 654, 1452, 1455, 1463
ApoI RAATTY 2 cut(s) 1132, 1522
AspS9I GGNCC 2 cut(s) 686, 873
AsuHPI GGTGA 4 cut(s) 359, 373, 1360, 1420
AsuNHI GCTAGC 1 cut(s) 1198
BalI TGGCCA 1 cut(s) 166
BanII GRGCYC 3 cut(s) 52, 1048, 1180
BarI GAAGNNNNNNTAC 2 cut(s) 492, 524
BbsI GAAGAC 2 cut(s) 909, 1038
Bbv12I GWGCWC 2 cut(s) 1048, 1180
BbvI GCAGC 5 cut(s) 321, 666, 1442, 1464, 1475
BccI CCATC 6 cut(s) 4, 449, 488, 567, 890, 911
BciT130I CCWGG 1 cut(s) 809
BcoDI GTCTC 5 cut(s) 767, 1059, 1092, 1501, 1593
BfaI CTAG 3 cut(s) 524, 1199, 1553
BfmI CTRYAG 1 cut(s) 1461
BglII AGATCT 2 cut(s) 290, 1549
BisI GCNGC 5 cut(s) 335, 655, 1453, 1456, 1464
BlsI GCNGC 5 cut(s) 336, 656, 1454, 1457, 1465
BmcAI AGTACT 1 cut(s) 565
Bme1390I CCNGG 1 cut(s) 809
BmgBI CACGTC 1 cut(s) 393
BmgT120I GGNCC 2 cut(s) 686, 873
BmiI GGNNCC 1 cut(s) 874
BmrFI CCNGG 1 cut(s) 809
BmsI GCATC 2 cut(s) 1241, 1351
BmtI GCTAGC 1 cut(s) 1202
BpiI GAAGAC 2 cut(s) 909, 1038
BplI GAGNNNNNCTC 2 cut(s) 302, 334
BpuEI CTTGAG 2 cut(s) 1164, 1349
BsaI GGTCTC 1 cut(s) 1501
BsaJI CCNNGG 1 cut(s) 876
BsaWI WCCGGW 1 cut(s) 1501
BsaXI ACNNNNNCTCC 6 cut(s) 455, 485, 489, 519, 656, 686
Bsc4I CCNNNNNNNGG 3 cut(s) 344, 764, 1540
Bse1I ACTGG 2 cut(s) 703, 758
Bse3DI GCAATG 2 cut(s) 559, 1322
BseAI TCCGGA 1 cut(s) 1501
BseBI CCWGG 1 cut(s) 809
BseDI CCNNGG 1 cut(s) 876
BseGI GGATG 4 cut(s) 243, 427, 578, 710
BseLI CCNNNNNNNGG 3 cut(s) 344, 764, 1540
BseMI GCAATG 2 cut(s) 559, 1322
BseMII CTCAG 2 cut(s) 1302, 1505
BseNI ACTGG 2 cut(s) 703, 758
BseRI GAGGAG 3 cut(s) 1002, 1005, 1304
BseXI GCAGC 5 cut(s) 321, 666, 1442, 1464, 1475
BsgI GTGCAG 1 cut(s) 1441
BshFI GGCC 3 cut(s) 166, 688, 875
BsiHKAI GWGCWC 2 cut(s) 1048, 1180
BsiSI CCGG 1 cut(s) 1502
BslI CCNNNNNNNGG 3 cut(s) 344, 764, 1540
BsmAI GTCTC 5 cut(s) 767, 1059, 1092, 1501, 1593
BsmBI CGTCTC 1 cut(s) 1593
BsmI GAATGC 1 cut(s) 86
BsnI GGCC 3 cut(s) 166, 688, 875
Bso31I GGTCTC 1 cut(s) 1501
Bsp1286I GDGCHC 3 cut(s) 52, 1048, 1180
Bsp13I TCCGGA 1 cut(s) 1501
Bsp1407I TGTACA 1 cut(s) 61
Bsp143I GATC 6 cut(s) 55, 290, 1067, 1319, 1435, 1549
BspACI CCGC 6 cut(s) 321, 557, 702, 859, 1063, 1403
BspANI GGCC 3 cut(s) 166, 688, 875
BspCNI CTCAG 2 cut(s) 1303, 1504
BspEI TCCGGA 1 cut(s) 1501
BspLI GGNNCC 1 cut(s) 874
BspMAI CTGCAG 1 cut(s) 1465
BspOI GCTAGC 1 cut(s) 1202
BspTNI GGTCTC 1 cut(s) 1501
BsrDI GCAATG 2 cut(s) 559, 1322
BsrGI TGTACA 1 cut(s) 61
BsrI ACTGG 2 cut(s) 703, 758
BssECI CCNNGG 1 cut(s) 876
BssMI GATC 6 cut(s) 55, 290, 1067, 1319, 1435, 1549
BssT1I CCWWGG 1 cut(s) 876
Bst2UI CCWGG 1 cut(s) 809
Bst4CI ACNGT 2 cut(s) 71, 191
Bst6I CTCTTC 6 cut(s) 591, 884, 958, 1268, 1281, 1310
BstAUI TGTACA 1 cut(s) 61
BstC8I GCNNGC 2 cut(s) 84, 1200
BstDEI CTNAG 4 cut(s) 356, 650, 1311, 1491
BstF5I GGATG 4 cut(s) 243, 427, 578, 710
BstKTI GATC 6 cut(s) 58, 293, 1070, 1322, 1438, 1552
BstMAI GTCTC 5 cut(s) 767, 1059, 1092, 1501, 1593
BstMBI GATC 6 cut(s) 55, 290, 1067, 1319, 1435, 1549
BstMWI GCNNNNNNNGC 1 cut(s) 685
BstNI CCWGG 1 cut(s) 809
BstNSI RCATGY 1 cut(s) 613
BstSCI CCNGG 1 cut(s) 807
BstSFI CTRYAG 1 cut(s) 1461
BstV1I GCAGC 5 cut(s) 321, 666, 1442, 1464, 1475
BstV2I GAAGAC 2 cut(s) 909, 1038
BstX2I RGATCY 2 cut(s) 290, 1549
BstYI RGATCY 2 cut(s) 290, 1549
BsuRI GGCC 3 cut(s) 166, 688, 875
BtrI CACGTC 1 cut(s) 393
BtsCI GGATG 4 cut(s) 243, 427, 578, 710
BtsI GCAGTG 2 cut(s) 1383, 1458
BtsIMutI CAGTG 2 cut(s) 1383, 1458
Cac8I GCNNGC 2 cut(s) 84, 1200
CaiI CAGNNNCTG 1 cut(s) 591
Cfr13I GGNCC 2 cut(s) 686, 873
CseI GACGC 1 cut(s) 285
Csp6I GTAC 3 cut(s) 62, 509, 564
CviAII CATG 3 cut(s) 59, 610, 624
CviQI GTAC 3 cut(s) 62, 509, 564
DdeI CTNAG 4 cut(s) 356, 650, 1311, 1491
DpnI GATC 6 cut(s) 57, 292, 1069, 1321, 1437, 1551
DpnII GATC 6 cut(s) 55, 290, 1067, 1319, 1435, 1549
EaeI YGGCCR 1 cut(s) 164
Eam1104I CTCTTC 6 cut(s) 591, 884, 958, 1268, 1281, 1310
EarI CTCTTC 6 cut(s) 591, 884, 958, 1268, 1281, 1310
EciI GGCGGA 3 cut(s) 717, 874, 1052
Ecl136II GAGCTC 2 cut(s) 1046, 1178
Eco130I CCWWGG 1 cut(s) 876
Eco24I GRGCYC 3 cut(s) 52, 1048, 1180
Eco31I GGTCTC 1 cut(s) 1501
Eco32I GATATC 1 cut(s) 174
Eco53kI GAGCTC 2 cut(s) 1046, 1178
EcoICRI GAGCTC 2 cut(s) 1046, 1178
EcoRII CCWGG 1 cut(s) 807
EcoRV GATATC 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 876
EcoT38I GRGCYC 3 cut(s) 52, 1048, 1180
ErhI CCWWGG 1 cut(s) 876
Esp3I CGTCTC 1 cut(s) 1593
FaeI CATG 3 cut(s) 62, 613, 627
FalI AAGNNNNNCTT 2 cut(s) 1023, 1055
FatI CATG 3 cut(s) 58, 609, 623
FauI CCCGC 1 cut(s) 550
Fnu4HI GCNGC 5 cut(s) 335, 655, 1453, 1456, 1464
FokI GGATG 4 cut(s) 230, 434, 585, 717
FriOI GRGCYC 3 cut(s) 52, 1048, 1180
Fsp4HI GCNGC 5 cut(s) 335, 655, 1453, 1456, 1464
FspBI CTAG 3 cut(s) 524, 1199, 1553
GluI GCNGC 5 cut(s) 335, 655, 1453, 1456, 1464
HaeIII GGCC 3 cut(s) 166, 688, 875
HapII CCGG 1 cut(s) 1502
HgaI GACGC 1 cut(s) 285
Hin1II CATG 3 cut(s) 62, 613, 627
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 3 cut(s) 378, 1021, 1331
HpaII CCGG 1 cut(s) 1502
HphI GGTGA 4 cut(s) 359, 373, 1360, 1420
Hpy166II GTNNAC 2 cut(s) 382, 1192
Hpy188I TCNGA 5 cut(s) 202, 223, 397, 1009, 1535
Hpy188III TCNNGA 3 cut(s) 615, 1236, 1502
Hpy8I GTNNAC 2 cut(s) 382, 1192
HpyAV CCTTC 6 cut(s) 338, 758, 762, 832, 1216, 1261
HpyCH4III ACNGT 2 cut(s) 71, 191
HpyCH4IV ACGT 2 cut(s) 392, 671
HpyCH4V TGCA 6 cut(s) 103, 213, 552, 829, 1458, 1463
HpyF10VI GCNNNNNNNGC 1 cut(s) 685
HpyF3I CTNAG 4 cut(s) 356, 650, 1311, 1491
HpySE526I ACGT 2 cut(s) 392, 671
Hsp92II CATG 3 cut(s) 62, 613, 627
Kpn2I TCCGGA 1 cut(s) 1501
Kzo9I GATC 6 cut(s) 55, 290, 1067, 1319, 1435, 1549
LmnI GCTCC 2 cut(s) 811, 1504
Lsp1109I GCAGC 5 cut(s) 321, 666, 1442, 1464, 1475
LweI GCATC 2 cut(s) 1241, 1351
MaeI CTAG 3 cut(s) 524, 1199, 1553
MaeII ACGT 2 cut(s) 392, 671
MaeIII GTNAC 5 cut(s) 227, 361, 471, 1336, 1516
MalI GATC 6 cut(s) 57, 292, 1069, 1321, 1437, 1551
MboI GATC 6 cut(s) 55, 290, 1067, 1319, 1435, 1549
MflI RGATCY 2 cut(s) 290, 1549
MhlI GDGCHC 3 cut(s) 52, 1048, 1180
MlsI TGGCCA 1 cut(s) 166
MluCI AATT 8 cut(s) 324, 578, 777, 1132, 1208, 1469, 1522, 1592
MluNI TGGCCA 1 cut(s) 166
MlyI GAGTC 2 cut(s) 387, 1340
Mox20I TGGCCA 1 cut(s) 166
MroI TCCGGA 1 cut(s) 1501
MscI TGGCCA 1 cut(s) 166
MseI TTAA 7 cut(s) 93, 302, 435, 1241, 1304, 1413, 1431
Msp20I TGGCCA 1 cut(s) 166
MspA1I CMGCKG 1 cut(s) 1455
MspI CCGG 1 cut(s) 1502
MspR9I CCNGG 1 cut(s) 809
Mva1269I GAATGC 1 cut(s) 86
MvaI CCWGG 1 cut(s) 809
MwoI GCNNNNNNNGC 1 cut(s) 685
NdeII GATC 6 cut(s) 55, 290, 1067, 1319, 1435, 1549
NheI GCTAGC 1 cut(s) 1198
NlaIII CATG 3 cut(s) 62, 613, 627
NlaIV GGNNCC 1 cut(s) 874
NmuCI GTSAC 4 cut(s) 227, 361, 1336, 1516
NspI RCATGY 1 cut(s) 613
PciI ACATGT 1 cut(s) 609
PcsI WCGNNNNNNNCGW 1 cut(s) 1063
PctI GAATGC 1 cut(s) 86
PfeI GAWTC 1 cut(s) 1021
PfoI TCCNGGA 1 cut(s) 807
PkrI GCNGC 5 cut(s) 336, 656, 1454, 1457, 1465
PleI GAGTC 2 cut(s) 386, 1339
PpsI GAGTC 2 cut(s) 386, 1339
PscI ACATGT 1 cut(s) 609
Psp124BI GAGCTC 2 cut(s) 1048, 1180
Psp6I CCWGG 1 cut(s) 807
PspGI CCWGG 1 cut(s) 807
PspN4I GGNNCC 1 cut(s) 874
PspPI GGNCC 2 cut(s) 686, 873
PstI CTGCAG 1 cut(s) 1465
PstNI CAGNNNCTG 1 cut(s) 591
PsuI RGATCY 2 cut(s) 290, 1549
PvuII CAGCTG 1 cut(s) 1455
RsaI GTAC 3 cut(s) 63, 510, 565
RsaNI GTAC 3 cut(s) 62, 509, 564
SacI GAGCTC 2 cut(s) 1048, 1180
SaqAI TTAA 7 cut(s) 93, 302, 435, 1241, 1304, 1413, 1431
SatI GCNGC 5 cut(s) 335, 655, 1453, 1456, 1464
Sau3AI GATC 6 cut(s) 55, 290, 1067, 1319, 1435, 1549
Sau96I GGNCC 2 cut(s) 686, 873
ScaI AGTACT 1 cut(s) 565
SchI GAGTC 2 cut(s) 387, 1340
ScrFI CCNGG 1 cut(s) 809
SduI GDGCHC 3 cut(s) 52, 1048, 1180
SfaNI GCATC 2 cut(s) 1241, 1351
SfcI CTRYAG 1 cut(s) 1461
SmlI CTYRAG 2 cut(s) 1179, 1328
SmoI CTYRAG 2 cut(s) 1179, 1328
Sse9I AATT 8 cut(s) 324, 578, 777, 1132, 1208, 1469, 1522, 1592
SsiI CCGC 6 cut(s) 321, 557, 702, 859, 1063, 1403
SspMI CTAG 3 cut(s) 524, 1199, 1553
SstI GAGCTC 2 cut(s) 1048, 1180
StyD4I CCNGG 1 cut(s) 807
StyI CCWWGG 1 cut(s) 876
TaaI ACNGT 2 cut(s) 71, 191
TaiI ACGT 2 cut(s) 395, 674
TaqI TCGA 2 cut(s) 405, 1042
TasI AATT 8 cut(s) 324, 578, 777, 1132, 1208, 1469, 1522, 1592
TatI WGTACW 2 cut(s) 61, 563
TfiI GAWTC 1 cut(s) 1021
Tru1I TTAA 7 cut(s) 93, 302, 435, 1241, 1304, 1413, 1431
Tru9I TTAA 7 cut(s) 93, 302, 435, 1241, 1304, 1413, 1431
TscAI CASTG 2 cut(s) 1383, 1465
TseFI GTSAC 4 cut(s) 227, 361, 1336, 1516
TseI GCWGC 5 cut(s) 334, 654, 1452, 1455, 1463
Tsp45I GTSAC 4 cut(s) 227, 361, 1336, 1516
TspDTI ATGAA 6 cut(s) 17, 438, 523, 612, 851, 1311
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 2 cut(s) 1383, 1465
XapI RAATTY 2 cut(s) 1132, 1522
XceI RCATGY 1 cut(s) 613
XcmI CCANNNNNNNNNTGG 1 cut(s) 893
XspI CTAG 3 cut(s) 524, 1199, 1553
ZrmI AGTACT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.