RchiOBHm_Chr5g0001951

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
1108241 .. 1110528
2288 bp
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UTR
Exon/CDS
Intron
PRQ28333

Sequence Viewer

Length: 192 bp
ATGACCTCAAGAACTGGGATGCCGACTTCGTCAAGTTTAAACAGTAGAGGAGTTTATGAGCGCAATGGACGAGCAAGGAGGGCAAAAGAGTTAGTAGCAAACAAGAACAACATGAGATACAGACTCCAATCATATAATCAAGGATCGTTGAAATGGAAATTGGGGACTTTTTATCATTCATTGTTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

7.35

Weight (kDa)

11.31

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 151
AgsI TTSAA 1 cut(s) 151
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AlwI GGATC 1 cut(s) 151
AspLEI GCGC 1 cut(s) 63
BmrI ACTGGG 1 cut(s) 24
BmsI GCATC 1 cut(s) 9
BmuI ACTGGG 1 cut(s) 24
Bse1I ACTGG 1 cut(s) 19
Bse3DI GCAATG 1 cut(s) 70
BseGI GGATG 1 cut(s) 24
BseMI GCAATG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 19
BseRI GAGGAG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 143
BspPI GGATC 1 cut(s) 151
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 1 cut(s) 19
BssMI GATC 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 44
BstF5I GGATG 1 cut(s) 24
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 1 cut(s) 146
BstMBI GATC 1 cut(s) 143
BstMWI GCNNNNNNNGC 1 cut(s) 80
BtsCI GGATG 1 cut(s) 24
CfoI GCGC 1 cut(s) 63
CviAII CATG 1 cut(s) 112
DpnI GATC 1 cut(s) 145
DpnII GATC 1 cut(s) 143
DraI TTTAAA 1 cut(s) 39
FaeI CATG 1 cut(s) 115
FaiI YATR 4 cut(s) 57, 113, 133, 135
FaqI GGGAC 1 cut(s) 178
FatI CATG 1 cut(s) 111
FokI GGATG 1 cut(s) 31
GlaI GCGC 1 cut(s) 62
HhaI GCGC 1 cut(s) 63
Hin1II CATG 1 cut(s) 115
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HinfI GANTC 1 cut(s) 123
Hpy188III TCNNGA 1 cut(s) 9
HpyCH4III ACNGT 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
Hsp92II CATG 1 cut(s) 115
HspAI GCGC 1 cut(s) 61
Kzo9I GATC 1 cut(s) 143
LweI GCATC 1 cut(s) 9
MalI GATC 1 cut(s) 145
MboI GATC 1 cut(s) 143
MluCI AATT 1 cut(s) 158
MlyI GAGTC 1 cut(s) 117
MnlI CCTC 3 cut(s) 16, 41, 72
MseI TTAA 1 cut(s) 38
MssI GTTTAAAC 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 1 cut(s) 143
NlaIII CATG 1 cut(s) 115
PflFI GACNNNGTC 1 cut(s) 28
PleI GAGTC 1 cut(s) 117
PmeI GTTTAAAC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 117
PsyI GACNNNGTC 1 cut(s) 28
SaqAI TTAA 1 cut(s) 38
Sau3AI GATC 1 cut(s) 143
SchI GAGTC 1 cut(s) 117
SetI ASST 1 cut(s) 8
SfaNI GCATC 1 cut(s) 9
SgeI CNNG 8 cut(s) 21, 27, 45, 83, 87, 115, 124, 152
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 1 cut(s) 158
TaaI ACNGT 1 cut(s) 44
TasI AATT 1 cut(s) 158
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TspDTI ATGAA 2 cut(s) 168, 176
Tth111I GACNNNGTC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.