Rroxscaffold_5G00357160

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
36732980 .. 36734948
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00357160.1

Sequence Viewer

Length: 192 bp
ATGACCTCAAGAACTGGGACGCCGACTTCGTCAAGTTTAAGCAGTAGAGGAGTTTATGAGCGCAATGGACGAGCAAGGAGGGCAAAAGAGTTGGTAGCAAGCAAGAACAACATGAGATACAGACCCCAATCATATAATCAAGGATCGTTGAAATGGAAATTGGGGACTTCTTATCATTCATTGTTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

7.19

Weight (kDa)

11.31

Isoelectric Point (pI)

31.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 151
AcyI GRCGYC 1 cut(s) 20
AgsI TTSAA 1 cut(s) 151
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AlwI GGATC 1 cut(s) 151
ArsI GACNNNNNNTTYG 2 cut(s) 10, 42
AspLEI GCGC 1 cut(s) 63
BmrI ACTGGG 1 cut(s) 24
BmuI ACTGGG 1 cut(s) 24
BsaHI GRCGYC 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 19
Bse3DI GCAATG 1 cut(s) 70
BseMI GCAATG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 19
BseRI GAGGAG 1 cut(s) 63
BslFI GGGAC 2 cut(s) 31, 178
BsmFI GGGAC 2 cut(s) 31, 178
Bsp143I GATC 1 cut(s) 143
BspPI GGATC 1 cut(s) 151
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 1 cut(s) 19
BssMI GATC 1 cut(s) 143
BssNI GRCGYC 1 cut(s) 20
BstACI GRCGYC 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 100
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 1 cut(s) 146
BstMBI GATC 1 cut(s) 143
BstMWI GCNNNNNNNGC 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 100
CfoI GCGC 1 cut(s) 63
CseI GACGC 1 cut(s) 28
CviAII CATG 1 cut(s) 112
DpnI GATC 1 cut(s) 145
DpnII GATC 1 cut(s) 143
FaeI CATG 1 cut(s) 115
FaiI YATR 4 cut(s) 57, 113, 133, 135
FaqI GGGAC 2 cut(s) 31, 178
FatI CATG 1 cut(s) 111
GlaI GCGC 1 cut(s) 62
HgaI GACGC 1 cut(s) 28
HhaI GCGC 1 cut(s) 63
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 1 cut(s) 115
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
Hpy188III TCNNGA 1 cut(s) 9
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 1 cut(s) 115
HspAI GCGC 1 cut(s) 61
Kzo9I GATC 1 cut(s) 143
MalI GATC 1 cut(s) 145
MboI GATC 1 cut(s) 143
MluCI AATT 1 cut(s) 158
MnlI CCTC 3 cut(s) 16, 41, 72
MseI TTAA 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 1 cut(s) 143
NlaIII CATG 1 cut(s) 115
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PflFI GACNNNGTC 1 cut(s) 28
PsyI GACNNNGTC 1 cut(s) 28
SaqAI TTAA 1 cut(s) 38
Sau3AI GATC 1 cut(s) 143
SetI ASST 1 cut(s) 8
SgeI CNNG 9 cut(s) 21, 27, 45, 83, 87, 111, 115, 124, 152
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 1 cut(s) 158
TasI AATT 1 cut(s) 158
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TspDTI ATGAA 2 cut(s) 168, 176
Tth111I GACNNNGTC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.