Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002270

Physical Location & Seq

Genomic Coordinates Forward (+)

24747407 .. 24752872

Gene Structure 5466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033240

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGACCTCAAGAACTAGGATGCCGACTTCGTCAAGGTCAACCAGGCCACCCTTTTTGATCTCATCCCGTTTAAGCAGTAGAGGAGTTTATGAGCGCAATGGACGAGCAAGGAGGGCAAAAGAAGATTCCTTTATTGATCGCCATGTACGGCTACCAAATCCGGGAGTCCGGCAGCCTTATGGTCCAGGTCATCGTGCTCCAGTGCATCATTTGGTATACTGCTCTGTTGCTCTTCCTCTTCGAGTACCGCGACGACAAGCTACTAATAATGGAGTAGTTCTCGGAGACCGCAACCTTCATCGTCTCCTTCAAGGTCGACGCCGGATCGACCTGAATGATCTGGAGCAATCCGATTACCGACGAGTCGGTCTCGATACTGTAGAAGCAGATATCGACTTCGCCGCGGTGATGAAAATGAAGAGATCGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.41

Weight (kDa)

11.43

Isoelectric Point (pI)

71.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04060
malus_domestica	MD06G1101600.v1.1 MD06G1101700.v1.1 MD06G1101900.v1.1 MD14G1121200.v1.1
prunus_persica	Prupe.5G115000_v2.0.a1 Prupe.5G115000_v2.0.a1 Prupe.5G115000_v2.0.a1
pyrus_communis	pycom06g09680
rosa_chinensis	RchiOBHm_Chr5g0001951 RchiOBHm_Chr7g0195461
rosa_laevigata	RLG00000002439 RLG00000004119 RLG00000022620 RLG00000028643 RLG00000028651 RLG00000032833 RLG00000033240
rosa_multiflora	Rmu_sc0000317.1_g000011 Rmu_sc0018163.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094000 Rroxscaffold_3G00260460 Rroxscaffold_5G00357160
rosa_rugosa	Rorug02G0433400 Rorug07G0023400
rosa_samantha	Rh2AG537600 Rh2BG632300 Rh2DG488700 Rh2DG645100 Rh3BG060600 Rh3CG059400 Rh6AG052600 Rh6AG097200 Rh6CG084100 Rh6CG182500 Rh6DG080300 Rh6DG173900 Rh7AG150900 Rh7BG152600 Rh7CG156100 Rh7CG185200 Rh7DG151900
rosa_wichuraiana	Rw7G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	366
AccI	GTMKAC	2 cut(s)	216, 316
AccII	CGCG	2 cut(s)	250, 404
AciI	CCGC	4 cut(s)	248, 289, 402, 404
AclWI	GGATC	1 cut(s)	332
AcyI	GRCGYC	1 cut(s)	319
AfaI	GTAC	2 cut(s)	147, 246
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	1 cut(s)	311
AjnI	CCWGG	2 cut(s)	41, 184
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	3 cut(s)	279, 308, 374
AlwI	GGATC	1 cut(s)	332
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	182
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	418
AvaII	GGWCC	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	184
BceAI	ACGGC	1 cut(s)	164
BciT130I	CCWGG	2 cut(s)	43, 186
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	3 cut(s)	279, 308, 374
BfaI	CTAG	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	378
BisI	GCNGC	2 cut(s)	173, 402
BlsI	GCNGC	2 cut(s)	174, 403
Bme1390I	CCNGG	3 cut(s)	43, 162, 186
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmrFI	CCNGG	3 cut(s)	43, 162, 186
BmsI	GCATC	2 cut(s)	9, 214
BplI	GAGNNNNNCTC	4 cut(s)	264, 296, 354, 386
BpmI	CTGGAG	2 cut(s)	183, 362
BpuMI	CCSGG	1 cut(s)	162
BsaHI	GRCGYC	1 cut(s)	319
BsaI	GGTCTC	2 cut(s)	279, 374
BsaJI	CCNNGG	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	103
BseBI	CCWGG	2 cut(s)	43, 186
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	2 cut(s)	24, 62
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	103
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	184
Bsh1236I	CGCG	2 cut(s)	250, 404
BshFI	GGCC	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	199
BsiSI	CCGG	3 cut(s)	161, 169, 322
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	3 cut(s)	279, 308, 374
BsmBI	CGTCTC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	46
Bso31I	GGTCTC	2 cut(s)	279, 374
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	5 cut(s)	57, 136, 324, 337, 422
BspACI	CCGC	4 cut(s)	248, 289, 402, 404
BspANI	GGCC	1 cut(s)	46
BspFNI	CGCG	2 cut(s)	250, 404
BspPI	GGATC	1 cut(s)	332
BspQI	GCTCTTC	1 cut(s)	237
BspTNI	GGTCTC	2 cut(s)	279, 374
BsrDI	GCAATG	1 cut(s)	103
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	5 cut(s)	57, 136, 324, 337, 422
BssNAI	GTATAC	1 cut(s)	217
BssNI	GRCGYC	1 cut(s)	319
Bst1107I	GTATAC	1 cut(s)	217
Bst2UI	CCWGG	2 cut(s)	43, 186
Bst4CI	ACNGT	1 cut(s)	379
Bst6I	CTCTTC	3 cut(s)	237, 243, 413
BstACI	GRCGYC	1 cut(s)	319
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	2 cut(s)	24, 62
BstFNI	CGCG	2 cut(s)	250, 404
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	5 cut(s)	60, 139, 327, 340, 425
BstMAI	GTCTC	3 cut(s)	279, 308, 374
BstMBI	GATC	5 cut(s)	57, 136, 324, 337, 422
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	2 cut(s)	43, 186
BstSCI	CCNGG	3 cut(s)	41, 160, 184
BstSFI	CTRYAG	1 cut(s)	378
BstUI	CGCG	2 cut(s)	250, 404
BstV1I	GCAGC	1 cut(s)	184
BstZ17I	GTATAC	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	46
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	2 cut(s)	24, 62
BtsIMutI	CAGTG	1 cut(s)	207
CfoI	GCGC	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	182
Cfr42I	CCGCGG	1 cut(s)	405
CseI	GACGC	1 cut(s)	327
Csp6I	GTAC	2 cut(s)	146, 245
CspCI	CAANNNNNGTGG	2 cut(s)	36, 71
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	4 cut(s)	46, 151, 175, 260
CviKI_1	RGCY	4 cut(s)	46, 151, 175, 260
CviQI	GTAC	2 cut(s)	146, 245
DpnI	GATC	5 cut(s)	59, 138, 326, 339, 424
DpnII	GATC	5 cut(s)	57, 136, 324, 337, 422
DrdI	GACNNNNNNGTC	1 cut(s)	366
DseDI	GACNNNNNNGTC	1 cut(s)	366
Eam1104I	CTCTTC	3 cut(s)	237, 243, 413
EarI	CTCTTC	3 cut(s)	237, 243, 413
Eco31I	GGTCTC	2 cut(s)	279, 374
Eco32I	GATATC	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	41, 184
EcoRV	GATATC	1 cut(s)	391
Esp3I	CGTCTC	1 cut(s)	308
FaeI	CATG	1 cut(s)	146
FaiI	YATR	4 cut(s)	90, 144, 180, 217
FatI	CATG	1 cut(s)	142
FblI	GTMKAC	2 cut(s)	216, 316
Fnu4HI	GCNGC	2 cut(s)	173, 402
FokI	GGATG	2 cut(s)	31, 49
Fsp4HI	GCNGC	2 cut(s)	173, 402
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	2 cut(s)	173, 402
GsuI	CTGGAG	2 cut(s)	183, 362
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	3 cut(s)	161, 169, 322
HgaI	GACGC	1 cut(s)	327
HhaI	GCGC	1 cut(s)	96
Hin1I	GRCGYC	1 cut(s)	319
Hin1II	CATG	1 cut(s)	146
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HincII	GTYRAC	2 cut(s)	39, 317
HindII	GTYRAC	2 cut(s)	39, 317
HinfI	GANTC	3 cut(s)	125, 165, 363
HpaII	CCGG	3 cut(s)	161, 169, 322
HphI	GGTGA	1 cut(s)	418
Hpy166II	GTNNAC	3 cut(s)	39, 217, 317
Hpy188I	TCNGA	3 cut(s)	284, 352, 427
Hpy188III	TCNNGA	3 cut(s)	9, 341, 371
Hpy8I	GTNNAC	3 cut(s)	39, 217, 317
Hpy99I	CGWCG	3 cut(s)	255, 321, 363
HpyAV	CCTTC	2 cut(s)	305, 317
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4V	TGCA	1 cut(s)	205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
Hsp92I	GRCGYC	1 cut(s)	319
Hsp92II	CATG	1 cut(s)	146
HspAI	GCGC	1 cut(s)	94
KspI	CCGCGG	1 cut(s)	405
Kzo9I	GATC	5 cut(s)	57, 136, 324, 337, 422
LguI	GCTCTTC	1 cut(s)	237
LmnI	GCTCC	2 cut(s)	202, 343
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	2 cut(s)	9, 214
MaeI	CTAG	1 cut(s)	15
MalI	GATC	5 cut(s)	59, 138, 326, 339, 424
MboI	GATC	5 cut(s)	57, 136, 324, 337, 422
MboII	GAAGA	4 cut(s)	134, 224, 230, 430
MhlI	GDGCHC	1 cut(s)	199
MlyI	GAGTC	2 cut(s)	174, 372
MnlI	CCTC	4 cut(s)	16, 74, 105, 246
MseI	TTAA	1 cut(s)	71
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	3 cut(s)	161, 169, 322
MspR9I	CCNGG	3 cut(s)	43, 162, 186
MvaI	CCWGG	2 cut(s)	43, 186
MvnI	CGCG	2 cut(s)	250, 404
MwoI	GCNNNNNNNGC	1 cut(s)	113
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	5 cut(s)	57, 136, 324, 337, 422
NlaIII	CATG	1 cut(s)	146
PciSI	GCTCTTC	1 cut(s)	237
PcsI	WCGNNNNNNNCGW	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	125
PflFI	GACNNNGTC	1 cut(s)	28
PfoI	TCCNGGA	1 cut(s)	160
PkrI	GCNGC	2 cut(s)	174, 403
PleI	GAGTC	2 cut(s)	173, 371
PpsI	GAGTC	2 cut(s)	173, 371
Psp6I	CCWGG	2 cut(s)	41, 184
PspGI	CCWGG	2 cut(s)	41, 184
PspPI	GGNCC	1 cut(s)	182
PsyI	GACNNNGTC	1 cut(s)	28
RsaI	GTAC	2 cut(s)	147, 246
RsaNI	GTAC	2 cut(s)	146, 245
SacII	CCGCGG	1 cut(s)	405
SalI	GTCGAC	1 cut(s)	315
SapI	GCTCTTC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	2 cut(s)	173, 402
Sau3AI	GATC	5 cut(s)	57, 136, 324, 337, 422
Sau96I	GGNCC	1 cut(s)	182
SchI	GAGTC	2 cut(s)	174, 372
ScrFI	CCNGG	3 cut(s)	43, 162, 186
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	7 cut(s)	8, 38, 190, 262, 297, 316, 333
SfaNI	GCATC	2 cut(s)	9, 214
SfcI	CTRYAG	1 cut(s)	378
Sfr303I	CCGCGG	1 cut(s)	405
SgrBI	CCGCGG	1 cut(s)	405
SinI	GGWCC	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
SsiI	CCGC	4 cut(s)	248, 289, 402, 404
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	3 cut(s)	41, 160, 184
TaaI	ACNGT	1 cut(s)	379
TaqI	TCGA	5 cut(s)	241, 316, 327, 372, 393
TaqII	GACCGA	1 cut(s)	356
TauI	GCSGC	1 cut(s)	404
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TscAI	CASTG	1 cut(s)	207
TseI	GCWGC	1 cut(s)	172
TspDTI	ATGAA	3 cut(s)	287, 425, 431
TspRI	CASTG	1 cut(s)	207
Tth111I	GACNNNGTC	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	182
XmiI	GTMKAC	2 cut(s)	216, 316
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.