Rroxscaffold_3G00260460

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002270
Physical Location & Seq
Reverse (-)
54874113 .. 54876973
2861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00260460.1

Sequence Viewer

Length: 1047 bp
ATGTCAGGTAATAAAAAGCAGATGAAAAAGATAGGGAGGATAATGAGTGTGAGGAAACAGAAGTATAGAGCCCCAGATCATGTACAATACCGTTGTAATATGCTGGCATTCCTTAAAATAATGCAGAAAGTAAGAGAACGCTTGACTAAAAGCCACTTGGAGTTGCTACAGCAAACTCCGTTTTGGCCATTGATATCGGCATTTTACAATGGTATGATTTCTGAAAATGACTGCAAGAAATCGGAGAGTGACATCAATGACATCATCCAATGCTACAACTCAAACTCAAAGTGTTTTGAGTTTGGTAGCAGATCTGCGTCTTTAACGCCAGAGGACATCTCCGTGATTTTGGGGCTGCCACAAGAAGGTGAAACACTAAGGGTGACAGGGCTGTTTGGAGTCAACAGATACACGTCAGATTTTGTCGAAAGATATTTCAAGGATGAAAAGAGAGTTAAGAAAACATTGGTAGATGATGGTTTGAAGAAAAGCGTTACAAGGGAAAAAGAGAAACTGATAGAGAAGATGTTGTACGCCTTTATTATACTAGAGTTATTCATCACATTCTTATTCTGCAATGCGGGTAGTACTATTGGATGGAAATTAGTCAGGTGCTGTGAAGAGTTAGAAAACATGTCAAGATATTCATGGGCAAAAGCAGTTGCCGACTTTCTAAGCAGCACATTGGAGAAAACGTCCGGGCAGTACGGGCCATATTCTACTGGTGGATGTGTGGTTGTCCTATTGTTTTGGTTGTGTGAGAGAAGTAATCTTATACAACCAGTTGAAGGAAGGGAGACAATTACACCAGCCCTAATAAAATGGAATATCCAGGAGCTACACTTGAAACTGCAACGAATGAAGGACTTTGAAGAACTTGGGCGGAGTTTTGAGGGGACCAAGGAGATCCAGAAGAGAGATGGAGAAGACAGGAGGAAGATGGAAATGGAACAGGAGAAAACGAAGAAACACAAGAAGAAAGATAGAAGAGAGAAGAAAACTGAAACAGATAGAAAGAGGAGAAAGAAAGTGTTTCTGATGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

348

Amino Acids

40.84

Weight (kDa)

9.49

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 72 - 283 2.8e-11 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 581, 883
AclWI GGATC 1 cut(s) 901
AcoI YGGCCR 1 cut(s) 185
AfaI GTAC 4 cut(s) 84, 533, 589, 707
AfiI CCNNNNNNNGG 2 cut(s) 365, 788
AflIII ACRYGT 2 cut(s) 411, 633
AgsI TTSAA 5 cut(s) 439, 484, 788, 847, 872
AjiI CACGTC 1 cut(s) 414
AjnI CCWGG 1 cut(s) 831
AluBI AGCT 1 cut(s) 838
AluI AGCT 1 cut(s) 838
Alw26I GTCTC 1 cut(s) 791
AlwI GGATC 1 cut(s) 901
AlwNI CAGNNNCTG 1 cut(s) 615
AoxI GGCC 2 cut(s) 185, 710
ApeKI GCWGC 2 cut(s) 355, 678
AspS9I GGNCC 2 cut(s) 710, 897
AsuC2I CCSGG 1 cut(s) 700
AsuHPI GGTGA 2 cut(s) 380, 394
AvaII GGWCC 1 cut(s) 897
BalI TGGCCA 1 cut(s) 187
BanII GRGCYC 1 cut(s) 73
BarI GAAGNNNNNNTAC 2 cut(s) 515, 547
BbsI GAAGAC 1 cut(s) 933
BbvI GCAGC 2 cut(s) 342, 690
BccI CCATC 4 cut(s) 470, 591, 914, 934
BciT130I CCWGG 1 cut(s) 833
BcnI CCSGG 1 cut(s) 700
BcoDI GTCTC 1 cut(s) 791
BfaI CTAG 1 cut(s) 548
BfmI CTRYAG 1 cut(s) 167
BglII AGATCT 1 cut(s) 311
BisI GCNGC 2 cut(s) 356, 679
BlsI GCNGC 2 cut(s) 357, 680
BmcAI AGTACT 1 cut(s) 589
Bme1390I CCNGG 2 cut(s) 700, 833
Bme18I GGWCC 1 cut(s) 897
BmgBI CACGTC 1 cut(s) 414
BmgT120I GGNCC 2 cut(s) 710, 897
BmiI GGNNCC 1 cut(s) 898
BmrFI CCNGG 2 cut(s) 700, 833
BpiI GAAGAC 1 cut(s) 933
BplI GAGNNNNNCTC 2 cut(s) 323, 355
BpuMI CCSGG 1 cut(s) 700
BsaJI CCNNGG 1 cut(s) 900
BsaXI ACNNNNNCTCC 2 cut(s) 680, 710
Bsc4I CCNNNNNNNGG 2 cut(s) 365, 788
Bse1I ACTGG 2 cut(s) 727, 782
Bse3DI GCAATG 1 cut(s) 583
BseBI CCWGG 1 cut(s) 833
BseDI CCNNGG 1 cut(s) 900
BseGI GGATG 4 cut(s) 264, 448, 602, 734
BseLI CCNNNNNNNGG 2 cut(s) 365, 788
BseMI GCAATG 1 cut(s) 583
BseNI ACTGG 2 cut(s) 727, 782
BseRI GAGGAG 1 cut(s) 1033
BseXI GCAGC 2 cut(s) 342, 690
BshFI GGCC 2 cut(s) 187, 712
BsiSI CCGG 1 cut(s) 699
BslFI GGGAC 1 cut(s) 910
BslI CCNNNNNNNGG 2 cut(s) 365, 788
BsmAI GTCTC 1 cut(s) 791
BsmFI GGGAC 1 cut(s) 910
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 2 cut(s) 187, 712
Bsp1286I GDGCHC 1 cut(s) 73
Bsp1407I TGTACA 1 cut(s) 82
Bsp143I GATC 3 cut(s) 76, 311, 906
BspACI CCGC 2 cut(s) 581, 883
BspANI GGCC 2 cut(s) 187, 712
BspLI GGNNCC 1 cut(s) 898
BspPI GGATC 1 cut(s) 901
BsrDI GCAATG 1 cut(s) 583
BsrGI TGTACA 1 cut(s) 82
BsrI ACTGG 2 cut(s) 727, 782
BssECI CCNNGG 1 cut(s) 900
BssMI GATC 3 cut(s) 76, 311, 906
BssT1I CCWWGG 1 cut(s) 900
Bst2UI CCWGG 1 cut(s) 833
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 3 cut(s) 615, 908, 982
BstAUI TGTACA 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 2 cut(s) 377, 674
BstF5I GGATG 4 cut(s) 264, 448, 602, 734
BstKTI GATC 3 cut(s) 79, 314, 909
BstMAI GTCTC 1 cut(s) 791
BstMBI GATC 3 cut(s) 76, 311, 906
BstMWI GCNNNNNNNGC 1 cut(s) 709
BstNI CCWGG 1 cut(s) 833
BstNSI RCATGY 1 cut(s) 637
BstSCI CCNGG 2 cut(s) 698, 831
BstSFI CTRYAG 1 cut(s) 167
BstV1I GCAGC 2 cut(s) 342, 690
BstV2I GAAGAC 1 cut(s) 933
BstX2I RGATCY 2 cut(s) 311, 906
BstYI RGATCY 2 cut(s) 311, 906
BsuRI GGCC 2 cut(s) 187, 712
BtrI CACGTC 1 cut(s) 414
BtsCI GGATG 4 cut(s) 264, 448, 602, 734
Cac8I GCNNGC 1 cut(s) 105
CaiI CAGNNNCTG 1 cut(s) 615
Cfr13I GGNCC 2 cut(s) 710, 897
CseI GACGC 1 cut(s) 306
Csp6I GTAC 4 cut(s) 83, 532, 588, 706
CviAII CATG 3 cut(s) 80, 634, 648
CviJI RGCY 8 cut(s) 71, 153, 187, 355, 391, 712, 812, 838
CviKI_1 RGCY 8 cut(s) 71, 153, 187, 355, 391, 712, 812, 838
CviQI GTAC 4 cut(s) 83, 532, 588, 706
DdeI CTNAG 2 cut(s) 377, 674
DpnI GATC 3 cut(s) 78, 313, 908
DpnII GATC 3 cut(s) 76, 311, 906
EaeI YGGCCR 1 cut(s) 185
Eam1104I CTCTTC 3 cut(s) 615, 908, 982
EarI CTCTTC 3 cut(s) 615, 908, 982
EciI GGCGGA 1 cut(s) 898
Eco130I CCWWGG 1 cut(s) 900
Eco24I GRGCYC 1 cut(s) 73
Eco32I GATATC 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 897
EcoRII CCWGG 1 cut(s) 831
EcoRV GATATC 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 900
EcoT38I GRGCYC 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 900
FaeI CATG 3 cut(s) 83, 637, 651
FaqI GGGAC 1 cut(s) 910
FatI CATG 3 cut(s) 79, 633, 647
FauI CCCGC 1 cut(s) 574
Fnu4HI GCNGC 2 cut(s) 356, 679
FokI GGATG 4 cut(s) 251, 455, 609, 741
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 2 cut(s) 356, 679
FspBI CTAG 1 cut(s) 548
GluI GCNGC 2 cut(s) 356, 679
HaeIII GGCC 2 cut(s) 187, 712
HapII CCGG 1 cut(s) 699
HgaI GACGC 1 cut(s) 306
Hin1II CATG 3 cut(s) 83, 637, 651
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 1 cut(s) 399
HpaII CCGG 1 cut(s) 699
HphI GGTGA 2 cut(s) 380, 394
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 4 cut(s) 223, 244, 418, 1038
Hpy188III TCNNGA 2 cut(s) 639, 910
Hpy8I GTNNAC 1 cut(s) 403
HpyAV CCTTC 4 cut(s) 359, 782, 786, 856
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4IV ACGT 2 cut(s) 413, 695
HpyCH4V TGCA 4 cut(s) 124, 234, 576, 853
HpyF10VI GCNNNNNNNGC 1 cut(s) 709
HpyF3I CTNAG 2 cut(s) 377, 674
HpySE526I ACGT 2 cut(s) 413, 695
Hsp92II CATG 3 cut(s) 83, 637, 651
Kzo9I GATC 3 cut(s) 76, 311, 906
LmnI GCTCC 1 cut(s) 835
Lsp1109I GCAGC 2 cut(s) 342, 690
MaeI CTAG 1 cut(s) 548
MaeII ACGT 2 cut(s) 413, 695
MaeIII GTNAC 3 cut(s) 248, 382, 493
MalI GATC 3 cut(s) 78, 313, 908
MboI GATC 3 cut(s) 76, 311, 906
MflI RGATCY 2 cut(s) 311, 906
MhlI GDGCHC 1 cut(s) 73
MlsI TGGCCA 1 cut(s) 187
MluCI AATT 2 cut(s) 602, 801
MluNI TGGCCA 1 cut(s) 187
MlyI GAGTC 1 cut(s) 408
MnlI CCTC 6 cut(s) 30, 45, 325, 886, 927, 1011
Mox20I TGGCCA 1 cut(s) 187
MscI TGGCCA 1 cut(s) 187
MseI TTAA 3 cut(s) 114, 323, 456
MslI CAYNNNNRTG 1 cut(s) 341
Msp20I TGGCCA 1 cut(s) 187
MspI CCGG 1 cut(s) 699
MspR9I CCNGG 2 cut(s) 700, 833
Mva1269I GAATGC 1 cut(s) 107
MvaI CCWGG 1 cut(s) 833
MwoI GCNNNNNNNGC 1 cut(s) 709
NciI CCSGG 1 cut(s) 700
NdeII GATC 3 cut(s) 76, 311, 906
NlaIII CATG 3 cut(s) 83, 637, 651
NlaIV GGNNCC 1 cut(s) 898
NmuCI GTSAC 2 cut(s) 248, 382
NspI RCATGY 1 cut(s) 637
PciI ACATGT 1 cut(s) 633
PctI GAATGC 1 cut(s) 107
PfoI TCCNGGA 1 cut(s) 831
PkrI GCNGC 2 cut(s) 357, 680
PleI GAGTC 1 cut(s) 407
PpsI GAGTC 1 cut(s) 407
PscI ACATGT 1 cut(s) 633
Psp6I CCWGG 1 cut(s) 831
PspGI CCWGG 1 cut(s) 831
PspN4I GGNNCC 1 cut(s) 898
PspPI GGNCC 2 cut(s) 710, 897
PstNI CAGNNNCTG 1 cut(s) 615
PsuI RGATCY 2 cut(s) 311, 906
RsaI GTAC 4 cut(s) 84, 533, 589, 707
RsaNI GTAC 4 cut(s) 83, 532, 588, 706
RseI CAYNNNNRTG 1 cut(s) 341
SaqAI TTAA 3 cut(s) 114, 323, 456
SatI GCNGC 2 cut(s) 356, 679
Sau3AI GATC 3 cut(s) 76, 311, 906
Sau96I GGNCC 2 cut(s) 710, 897
ScaI AGTACT 1 cut(s) 589
SchI GAGTC 1 cut(s) 408
ScrFI CCNGG 2 cut(s) 700, 833
SduI GDGCHC 1 cut(s) 73
SetI ASST 6 cut(s) 10, 370, 416, 614, 698, 840
SfcI CTRYAG 1 cut(s) 167
SinI GGWCC 1 cut(s) 897
SmiMI CAYNNNNRTG 1 cut(s) 341
Sse9I AATT 2 cut(s) 602, 801
SsiI CCGC 2 cut(s) 581, 883
SspMI CTAG 1 cut(s) 548
StyD4I CCNGG 2 cut(s) 698, 831
StyI CCWWGG 1 cut(s) 900
TaaI ACNGT 1 cut(s) 92
TaiI ACGT 2 cut(s) 416, 698
TaqI TCGA 1 cut(s) 426
TasI AATT 2 cut(s) 602, 801
TatI WGTACW 2 cut(s) 82, 587
Tru1I TTAA 3 cut(s) 114, 323, 456
Tru9I TTAA 3 cut(s) 114, 323, 456
TseFI GTSAC 2 cut(s) 248, 382
TseI GCWGC 2 cut(s) 355, 678
Tsp45I GTSAC 2 cut(s) 248, 382
TspDTI ATGAA 5 cut(s) 38, 459, 547, 636, 875
TspGWI ACGGA 2 cut(s) 168, 331
VpaK11BI GGWCC 1 cut(s) 897
XceI RCATGY 1 cut(s) 637
XcmI CCANNNNNNNNNTGG 1 cut(s) 917
XspI CTAG 1 cut(s) 548
ZrmI AGTACT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.