Rroxscaffold_2G00094000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002270
Physical Location & Seq
Reverse (-)
15331326 .. 15338410
7085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00094000.1

Sequence Viewer

Length: 405 bp
ATGGAAAGTAAAATAAAATCATTGCAGGAAAAGGCTCGTATAGCTGCCGAGTCTGCAGGCTCTTATATCATGGAGATTTATGCGCTGCTTACATATATAGTTGCATTGCTAGATAAGGGGTTGATTAATGAAACTTGCAACGGCTGGACTTGTGTTGTTAAATTCTCTGCAACAGTAGTTGTGCACTTGGCTTTCTCTTCAAAGGATTCCTTTGTTGATCGCCATGTACGGCTACCAAATCCCGGAGTCCAGCAGCCTTATGGTCCAGGTCATCGTGCTCCAGTGCATAATTTGGTATACTGCTATGTTGCTCTTCCTCTTCGAGTACCGCGACGGCAAGCTATTAATAATAGAGCAATTCCAGGAGACCGCAACCTTCATCGTCTCCTTCAAGGTCGACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.04

Weight (kDa)

9.89

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 297, 397
AccII CGCG 1 cut(s) 331
AciI CCGC 2 cut(s) 329, 370
AcsI RAATTY 1 cut(s) 161
AfaI GTAC 2 cut(s) 228, 327
AfiI CCNNNNNNNGG 1 cut(s) 242
AgsI TTSAA 2 cut(s) 201, 392
AjnI CCWGG 2 cut(s) 265, 361
AluBI AGCT 2 cut(s) 44, 341
AluI AGCT 2 cut(s) 44, 341
Alw21I GWGCWC 2 cut(s) 186, 280
Alw26I GTCTC 2 cut(s) 360, 389
Alw44I GTGCAC 1 cut(s) 182
ApaLI GTGCAC 1 cut(s) 182
ApeKI GCWGC 3 cut(s) 44, 85, 253
ApoI RAATTY 1 cut(s) 161
AseI ATTAAT 2 cut(s) 126, 345
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 243
AvaII GGWCC 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 186
Bbv12I GWGCWC 2 cut(s) 186, 280
BbvI GCAGC 3 cut(s) 31, 72, 265
BceAI ACGGC 3 cut(s) 157, 245, 350
BciT130I CCWGG 2 cut(s) 267, 363
BcnI CCSGG 1 cut(s) 243
BcoDI GTCTC 2 cut(s) 360, 389
BfaI CTAG 1 cut(s) 110
BfmI CTRYAG 1 cut(s) 54
BisI GCNGC 3 cut(s) 45, 86, 254
BlsI GCNGC 3 cut(s) 46, 87, 255
Bme1390I CCNGG 3 cut(s) 243, 267, 363
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmrFI CCNGG 3 cut(s) 243, 267, 363
BpmI CTGGAG 1 cut(s) 264
BpuMI CCSGG 1 cut(s) 243
BsaI GGTCTC 1 cut(s) 360
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 281
Bse3DI GCAATG 2 cut(s) 20, 104
BseBI CCWGG 2 cut(s) 267, 363
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMI GCAATG 2 cut(s) 20, 104
BseNI ACTGG 1 cut(s) 281
BseSI GKGCMC 1 cut(s) 186
BseXI GCAGC 3 cut(s) 31, 72, 265
Bsh1236I CGCG 1 cut(s) 331
BsiHKAI GWGCWC 2 cut(s) 186, 280
BsiSI CCGG 1 cut(s) 243
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 2 cut(s) 360, 389
BsmBI CGTCTC 1 cut(s) 389
Bso31I GGTCTC 1 cut(s) 360
Bsp1286I GDGCHC 2 cut(s) 186, 280
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 2 cut(s) 329, 370
BspFNI CGCG 1 cut(s) 331
BspMAI CTGCAG 1 cut(s) 58
BspQI GCTCTTC 1 cut(s) 318
BspTNI GGTCTC 1 cut(s) 360
BsrDI GCAATG 2 cut(s) 20, 104
BsrI ACTGG 1 cut(s) 281
BssMI GATC 1 cut(s) 217
BssNAI GTATAC 1 cut(s) 298
Bst1107I GTATAC 1 cut(s) 298
Bst2UI CCWGG 2 cut(s) 267, 363
Bst4CI ACNGT 2 cut(s) 175, 402
Bst6I CTCTTC 3 cut(s) 202, 318, 324
BstC8I GCNNGC 2 cut(s) 58, 339
BstFNI CGCG 1 cut(s) 331
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 2 cut(s) 360, 389
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 2 cut(s) 41, 53
BstNI CCWGG 2 cut(s) 267, 363
BstSCI CCNGG 3 cut(s) 241, 265, 361
BstSFI CTRYAG 1 cut(s) 54
BstSLI GKGCMC 1 cut(s) 186
BstUI CGCG 1 cut(s) 331
BstV1I GCAGC 3 cut(s) 31, 72, 265
BstZ17I GTATAC 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 2 cut(s) 58, 339
CfoI GCGC 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 2 cut(s) 227, 326
CviAII CATG 2 cut(s) 70, 224
CviJI RGCY 8 cut(s) 35, 44, 60, 144, 191, 232, 256, 341
CviKI_1 RGCY 8 cut(s) 35, 44, 60, 144, 191, 232, 256, 341
CviQI GTAC 2 cut(s) 227, 326
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Eam1104I CTCTTC 3 cut(s) 202, 318, 324
EarI CTCTTC 3 cut(s) 202, 318, 324
Eco31I GGTCTC 1 cut(s) 360
Eco47I GGWCC 1 cut(s) 263
EcoRII CCWGG 2 cut(s) 265, 361
Esp3I CGTCTC 1 cut(s) 389
FaeI CATG 2 cut(s) 73, 227
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FatI CATG 2 cut(s) 69, 223
FblI GTMKAC 2 cut(s) 297, 397
Fnu4HI GCNGC 3 cut(s) 45, 86, 254
Fsp4HI GCNGC 3 cut(s) 45, 86, 254
FspBI CTAG 1 cut(s) 110
GlaI GCGC 1 cut(s) 84
GluI GCNGC 3 cut(s) 45, 86, 254
GsuI CTGGAG 1 cut(s) 264
HapII CCGG 1 cut(s) 243
HhaI GCGC 1 cut(s) 85
Hin1II CATG 2 cut(s) 73, 227
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HincII GTYRAC 1 cut(s) 398
HindII GTYRAC 1 cut(s) 398
HinfI GANTC 3 cut(s) 50, 206, 246
HpaII CCGG 1 cut(s) 243
Hpy166II GTNNAC 3 cut(s) 184, 298, 398
Hpy8I GTNNAC 3 cut(s) 184, 298, 398
Hpy99I CGWCG 2 cut(s) 336, 402
HpyAV CCTTC 2 cut(s) 386, 398
HpyCH4III ACNGT 2 cut(s) 175, 402
HpyCH4V TGCA 7 cut(s) 25, 56, 104, 138, 170, 184, 286
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 53
Hsp92II CATG 2 cut(s) 73, 227
HspAI GCGC 1 cut(s) 83
Kzo9I GATC 1 cut(s) 217
LguI GCTCTTC 1 cut(s) 318
LmnI GCTCC 1 cut(s) 283
Lsp1109I GCAGC 3 cut(s) 31, 72, 265
MaeI CTAG 1 cut(s) 110
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 3 cut(s) 189, 305, 311
MhlI GDGCHC 2 cut(s) 186, 280
MluCI AATT 3 cut(s) 161, 289, 357
MlyI GAGTC 2 cut(s) 59, 255
MnlI CCTC 1 cut(s) 327
MseI TTAA 3 cut(s) 126, 159, 345
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 3 cut(s) 243, 267, 363
MvaI CCWGG 2 cut(s) 267, 363
MvnI CGCG 1 cut(s) 331
MwoI GCNNNNNNNGC 2 cut(s) 41, 53
NciI CCSGG 1 cut(s) 243
NdeII GATC 1 cut(s) 217
NlaIII CATG 2 cut(s) 73, 227
NmeAIII GCCGAG 1 cut(s) 73
PciSI GCTCTTC 1 cut(s) 318
PcsI WCGNNNNNNNCGW 1 cut(s) 328
PfeI GAWTC 1 cut(s) 206
PfoI TCCNGGA 2 cut(s) 241, 361
PkrI GCNGC 3 cut(s) 46, 87, 255
PleI GAGTC 2 cut(s) 58, 254
PpsI GAGTC 2 cut(s) 58, 254
PshBI ATTAAT 2 cut(s) 126, 345
Psp6I CCWGG 2 cut(s) 265, 361
PspGI CCWGG 2 cut(s) 265, 361
PspPI GGNCC 1 cut(s) 263
PstI CTGCAG 1 cut(s) 58
RsaI GTAC 2 cut(s) 228, 327
RsaNI GTAC 2 cut(s) 227, 326
SalI GTCGAC 1 cut(s) 396
SapI GCTCTTC 1 cut(s) 318
SaqAI TTAA 3 cut(s) 126, 159, 345
SatI GCNGC 3 cut(s) 45, 86, 254
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 1 cut(s) 263
SchI GAGTC 2 cut(s) 59, 255
ScrFI CCNGG 3 cut(s) 243, 267, 363
SduI GDGCHC 2 cut(s) 186, 280
SetI ASST 5 cut(s) 46, 271, 343, 378, 397
SfcI CTRYAG 1 cut(s) 54
SinI GGWCC 1 cut(s) 263
Sse9I AATT 3 cut(s) 161, 289, 357
SsiI CCGC 2 cut(s) 329, 370
SspMI CTAG 1 cut(s) 110
StyD4I CCNGG 3 cut(s) 241, 265, 361
TaaI ACNGT 2 cut(s) 175, 402
TaqI TCGA 2 cut(s) 322, 397
TasI AATT 3 cut(s) 161, 289, 357
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 3 cut(s) 126, 159, 345
Tru9I TTAA 3 cut(s) 126, 159, 345
TscAI CASTG 1 cut(s) 288
TseI GCWGC 3 cut(s) 44, 85, 253
TspDTI ATGAA 2 cut(s) 144, 368
TspRI CASTG 1 cut(s) 288
VneI GTGCAC 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 263
VspI ATTAAT 2 cut(s) 126, 345
XapI RAATTY 1 cut(s) 161
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XmiI GTMKAC 2 cut(s) 297, 397
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.