Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002270

Physical Location & Seq

Genomic Coordinates Forward (+)

25641641 .. 25642525

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028651

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCCGAGGACGGCAGTTCAATAGTTGCAGAGTTGGACCGAGGGGCAGAGGGATTGTCATCCAGAGAAGAGGAGCTGAGGCAAGAGATTGAGCAACACATGCACGAAAAGGCCGTGCTGGAGGAGAAGCACCAATTCGAGATTCTAGAGAGGCTGAAGGTGAAGGACGAGCTCTGGAGCCAAGCTGCTGATAATGGAGCAGTTCCCGGAGACTGCCGCCTCCATCGTCTCCTTCAAGGTCGACTCCTACGTCATGTTCCTCGACGGTCGCGACTTCCTCAAAACCAACTCCGAGATAGGCGACGACGGCGAGCTCCGCGTCAAGAACCATTTTCATCTTCATTCACAATGGAAAAAGAATTGACAATTAATCACATAAAATGCAAGCAGAAACAAGGGGAAGAACCAAAAGGGGGCTCAGGCAACCAAAAGTTCCACAAAGATGCAAACTTTGTACGCATGAACAAGACCCATATAGAATTTGACAACCGCATAAGGCACCAACAATCCAAATTTGAGAAGATTATCACGGAACACATTTTTGTTTCTCAGGCAACCAAAAGTTCCACAAAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 PMD

Protein Analysis

193

Amino Acids

22.49

Weight (kDa)

9.57

Isoelectric Point (pI)

82.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04060
malus_domestica	MD06G1101600.v1.1 MD06G1101700.v1.1 MD06G1101900.v1.1 MD14G1121200.v1.1
prunus_persica	Prupe.5G115000_v2.0.a1 Prupe.5G115000_v2.0.a1 Prupe.5G115000_v2.0.a1
pyrus_communis	pycom06g09680
rosa_chinensis	RchiOBHm_Chr5g0001951 RchiOBHm_Chr7g0195461
rosa_laevigata	RLG00000002439 RLG00000004119 RLG00000022620 RLG00000028643 RLG00000028651 RLG00000032833 RLG00000033240
rosa_multiflora	Rmu_sc0000317.1_g000011 Rmu_sc0018163.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094000 Rroxscaffold_3G00260460 Rroxscaffold_5G00357160
rosa_rugosa	Rorug02G0433400 Rorug07G0023400
rosa_samantha	Rh2AG537600 Rh2BG632300 Rh2DG488700 Rh2DG645100 Rh3BG060600 Rh3CG059400 Rh6AG052600 Rh6AG097200 Rh6CG084100 Rh6CG182500 Rh6DG080300 Rh6DG173900 Rh7AG150900 Rh7BG152600 Rh7CG156100 Rh7CG185200 Rh7DG151900
rosa_wichuraiana	Rw7G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	498
AccI	GTMKAC	1 cut(s)	241
AccII	CGCG	2 cut(s)	271, 319
AciI	CCGC	3 cut(s)	217, 317, 490
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	479, 512
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	456
AfiI	CCNNNNNNNGG	1 cut(s)	413
AgsI	TTSAA	2 cut(s)	21, 236
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AluBI	AGCT	4 cut(s)	76, 172, 185, 314
AluI	AGCT	4 cut(s)	76, 172, 185, 314
Alw21I	GWGCWC	2 cut(s)	174, 316
Alw26I	GTCTC	2 cut(s)	204, 233
AoxI	GGCC	2 cut(s)	3, 111
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	2 cut(s)	479, 512
AseI	ATTAAT	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	37
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	498
BanII	GRGCYC	3 cut(s)	174, 316, 419
Bbv12I	GWGCWC	2 cut(s)	174, 316
BbvCI	CCTCAGC	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	231
BceAI	ACGGC	3 cut(s)	28, 98, 323
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	2 cut(s)	204, 233
BfaI	CTAG	1 cut(s)	146
BisI	GCNGC	2 cut(s)	186, 217
BlsI	GCNGC	2 cut(s)	187, 218
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	179, 500
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	433
BpmI	CTGGAG	2 cut(s)	140, 196
Bpu10I	CCTNAGC	2 cut(s)	77, 418
BpuMI	CCSGG	1 cut(s)	207
BsaBI	GATNNNNATC	1 cut(s)	58
BsaJI	CCNNGG	2 cut(s)	6, 40
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse8I	GATNNNNATC	1 cut(s)	58
BseDI	CCNNGG	2 cut(s)	6, 40
BseGI	GGATG	1 cut(s)	59
BseJI	GATNNNNATC	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMII	CTCAG	3 cut(s)	68, 432, 563
BseRI	GAGGAG	2 cut(s)	86, 137
BseXI	GCAGC	1 cut(s)	172
Bsh1236I	CGCG	2 cut(s)	271, 319
Bsh1285I	CGRYCG	1 cut(s)	269
BshFI	GGCC	2 cut(s)	5, 113
BshNI	GGYRCC	1 cut(s)	498
BsiEI	CGRYCG	1 cut(s)	269
BsiHKAI	GWGCWC	2 cut(s)	174, 316
BsiSI	CCGG	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmAI	GTCTC	2 cut(s)	204, 233
BsmBI	CGTCTC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	5, 113
Bsp1286I	GDGCHC	3 cut(s)	174, 316, 419
Bsp68I	TCGCGA	1 cut(s)	271
BspACI	CCGC	3 cut(s)	217, 317, 490
BspANI	GGCC	2 cut(s)	5, 113
BspCNI	CTCAG	3 cut(s)	69, 431, 562
BspFNI	CGCG	2 cut(s)	271, 319
BspLI	GGNNCC	2 cut(s)	179, 500
BspT107I	GGYRCC	1 cut(s)	498
BssECI	CCNNGG	2 cut(s)	6, 40
Bst4CI	ACNGT	1 cut(s)	267
Bst6I	CTCTTC	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	100
BstC8I	GCNNGC	2 cut(s)	312, 386
BstDEI	CTNAG	3 cut(s)	77, 418, 549
BstF5I	GGATG	1 cut(s)	59
BstFNI	CGCG	2 cut(s)	271, 319
BstMAI	GTCTC	2 cut(s)	204, 233
BstMCI	CGRYCG	1 cut(s)	269
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 307, 316
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	205
BstUI	CGCG	2 cut(s)	271, 319
BstV1I	GCAGC	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	5, 113
BtsCI	GGATG	1 cut(s)	59
BtuMI	TCGCGA	1 cut(s)	271
Cac8I	GCNNGC	2 cut(s)	312, 386
Cfr13I	GGNCC	1 cut(s)	37
CseI	GACGC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	455
CviAII	CATG	3 cut(s)	100, 254, 460
CviJI	RGCY	9 cut(s)	5, 76, 113, 154, 172, 180, 185, 314, 417
CviKI_1	RGCY	9 cut(s)	5, 76, 113, 154, 172, 180, 185, 314, 417
CviQI	GTAC	1 cut(s)	455
DdeI	CTNAG	3 cut(s)	77, 418, 549
DrdI	GACNNNNNNGTC	1 cut(s)	249
DseDI	GACNNNNNNGTC	1 cut(s)	249
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Ecl136II	GAGCTC	2 cut(s)	172, 314
Eco24I	GRGCYC	3 cut(s)	174, 316, 419
Eco47I	GGWCC	1 cut(s)	37
Eco53kI	GAGCTC	2 cut(s)	172, 314
Eco57I	CTGAAG	1 cut(s)	176
EcoICRI	GAGCTC	2 cut(s)	172, 314
EcoT38I	GRGCYC	3 cut(s)	174, 316, 419
Esp3I	CGTCTC	1 cut(s)	233
FaeI	CATG	3 cut(s)	103, 257, 463
FaiI	YATR	8 cut(s)	101, 255, 377, 461, 474, 476, 494, 577
FatI	CATG	3 cut(s)	99, 253, 459
FblI	GTMKAC	1 cut(s)	241
Fnu4HI	GCNGC	2 cut(s)	186, 217
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	3 cut(s)	174, 316, 419
Fsp4HI	GCNGC	2 cut(s)	186, 217
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	2 cut(s)	186, 217
GsuI	CTGGAG	2 cut(s)	140, 196
HaeIII	GGCC	2 cut(s)	5, 113
HapII	CCGG	1 cut(s)	207
HgaI	GACGC	1 cut(s)	308
Hin1II	CATG	3 cut(s)	103, 257, 463
HincII	GTYRAC	1 cut(s)	242
HindII	GTYRAC	1 cut(s)	242
HinfI	GANTC	2 cut(s)	142, 243
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	293
Hpy188III	TCNNGA	6 cut(s)	63, 139, 146, 175, 270, 323
Hpy8I	GTNNAC	1 cut(s)	242
Hpy99I	CGWCG	3 cut(s)	267, 306, 309
HpyAV	CCTTC	3 cut(s)	151, 157, 242
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	4 cut(s)	29, 103, 384, 446
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 307, 316
HpyF3I	CTNAG	3 cut(s)	77, 418, 549
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	3 cut(s)	103, 257, 463
LmnI	GCTCC	4 cut(s)	73, 177, 197, 319
LpnPI	CCDG	6 cut(s)	76, 104, 160, 220, 405, 536
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	1 cut(s)	250
MboII	GAAGA	4 cut(s)	80, 330, 413, 532
MhlI	GDGCHC	3 cut(s)	174, 316, 419
MluCI	AATT	5 cut(s)	134, 359, 366, 479, 512
MlyI	GAGTC	1 cut(s)	237
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	9 cut(s)	35, 43, 64, 72, 115, 144, 230, 270, 288
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	441
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	207
MvnI	CGCG	2 cut(s)	271, 319
MwoI	GCNNNNNNNGC	3 cut(s)	100, 307, 316
NciI	CCSGG	1 cut(s)	207
NlaIII	CATG	3 cut(s)	103, 257, 463
NlaIV	GGNNCC	2 cut(s)	179, 500
NmeAIII	GCCGAG	1 cut(s)	31
NruI	TCGCGA	1 cut(s)	271
NspI	RCATGY	1 cut(s)	103
PcsI	WCGNNNNNNNCGW	3 cut(s)	111, 247, 268
PfeI	GAWTC	1 cut(s)	142
PfoI	TCCNGGA	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	187, 218
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
PshBI	ATTAAT	1 cut(s)	369
Psp124BI	GAGCTC	2 cut(s)	174, 316
PspN4I	GGNNCC	2 cut(s)	179, 500
PspPI	GGNCC	1 cut(s)	37
RruI	TCGCGA	1 cut(s)	271
RsaI	GTAC	1 cut(s)	456
RsaNI	GTAC	1 cut(s)	455
RseI	CAYNNNNRTG	1 cut(s)	441
SacI	GAGCTC	2 cut(s)	174, 316
SalI	GTCGAC	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	2 cut(s)	186, 217
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	237
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	3 cut(s)	174, 316, 419
SetI	ASST	7 cut(s)	78, 162, 174, 187, 241, 253, 316
SfaNI	GCATC	1 cut(s)	433
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	441
Sse9I	AATT	5 cut(s)	134, 359, 366, 479, 512
SsiI	CCGC	3 cut(s)	217, 317, 490
SspMI	CTAG	1 cut(s)	146
SstI	GAGCTC	2 cut(s)	174, 316
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	1 cut(s)	267
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	3 cut(s)	138, 241, 262
TaqII	GACCGA	1 cut(s)	54
TasI	AATT	5 cut(s)	134, 359, 366, 479, 512
TauI	GCSGC	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	3 cut(s)	324, 330, 476
TspGWI	ACGGA	1 cut(s)	545
VpaK11BI	GGWCC	1 cut(s)	37
VspI	ATTAAT	1 cut(s)	369
XapI	RAATTY	2 cut(s)	479, 512
XbaI	TCTAGA	1 cut(s)	145
XceI	RCATGY	1 cut(s)	103
XmiI	GTMKAC	1 cut(s)	241
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.