Rorug07G0023400

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002270
Physical Location & Seq
Forward (+)
1682831 .. 1684487
1657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0023400.1

Sequence Viewer

Length: 921 bp
ATGCATCCATCGAAAACTCCCATCCTGATGGAGGTGAAAAGCAGTGAAGAAGCTGCTAGTAGAGCTTTAGAGATAGCATCCGGAAATCATATGACTACTATAATCTTGTCTCATTCAATTGAACGGTTTTACCCCATAAGCAACCACATTGAAACTGTGCTGCCAACGCCTGTGAGTTTTGTGACTGTAAATGGCACTTACGAGTCTGGTAATGGTGAAGTCGATGTGACCCTTCGAAGTCGGGGGTATGTTGACAGGACTTGGTCTGTTTCTCTCAAGTATGAAACGAGTAGAACAAGAACCATGTTTAGTTCGGGAGATTGGAGTTGTAAACGAAGGAGAAGTCTAGGAACGTCTGCTGAGTTCCATGATGGTTGGTTGGATTTTAAAAAGGACAATGAGTTGATCTCCGGCGATTGTATCATTTTGGAGATGATCAAAGAACCTGCTGCCAACGATGAAAAACTTGTGTTTGAATTAGTTCATGTTTTTCGCCCTCCAACAACGACTCTGCCTTCTGAGAAATGGAAGAGACCAAGAGACCATGAGAATGAGGAGACAGTGAATGTGAAACATAAGAATTCAGATCAGCACAATGAAGCTGATTTGTTTTCGGCCGAGGTATACGATTCCTTAGTGGAGATATGCAAAGAAAAGGAGGAAGTGGTGAGCGAGTTAGAGTGTCAATTGGCAGAATGTGAAGGCAAGCAATTAGGTGATGAGAATATTTTAGGACTAAGAACAATGCACGCAGAGGCAGTGGAAGACTTGAATAAATTCAGGATCCATACTTCAGCCGTATTGAACTTTTGCAAAGACAAAAGACAGAGGTTACAAAAATTGTTTGCCGATGAGAAGAAGATTCAAATGGAGAAATCTAAGATTATGGCTAGGTTTGAGGACCATCTTCGATCCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

306

Amino Acids

35.12

Weight (kDa)

5.71

Isoelectric Point (pI)

54.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 454
AccI GTMKAC 1 cut(s) 624
AccIII TCCGGA 1 cut(s) 80
AclWI GGATC 3 cut(s) 778, 791, 906
AcoI YGGCCR 1 cut(s) 615
AcsI RAATTY 2 cut(s) 580, 776
AcuI CTGAAG 1 cut(s) 777
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 7 cut(s) 117, 122, 152, 476, 772, 805, 866
AluBI AGCT 3 cut(s) 53, 65, 602
AluI AGCT 3 cut(s) 53, 65, 602
Alw26I GTCTC 4 cut(s) 114, 526, 534, 551
AlwI GGATC 3 cut(s) 778, 791, 906
Aor13HI TCCGGA 1 cut(s) 80
AoxI GGCC 1 cut(s) 615
ApeKI GCWGC 3 cut(s) 53, 160, 449
ApoI RAATTY 2 cut(s) 580, 776
ArsI GACNNNNNNTTYG 2 cut(s) 328, 360
Asp700I GAANNNNTTC 2 cut(s) 480, 776
AspS9I GGNCC 1 cut(s) 901
AsuHPI GGTGA 4 cut(s) 46, 227, 679, 728
AsuII TTCGAA 1 cut(s) 235
AvaII GGWCC 1 cut(s) 901
BamHI GGATCC 1 cut(s) 783
BbsI GAAGAC 1 cut(s) 771
BbvI GCAGC 3 cut(s) 40, 147, 436
BccI CCATC 5 cut(s) 16, 22, 29, 365, 912
BceAI ACGGC 1 cut(s) 782
BclI TGATCA 1 cut(s) 435
BcoDI GTCTC 4 cut(s) 114, 526, 534, 551
BfaI CTAG 3 cut(s) 57, 347, 891
BfuAI ACCTGC 1 cut(s) 454
BisI GCNGC 3 cut(s) 54, 161, 450
BlsI GCNGC 3 cut(s) 55, 162, 451
Bme18I GGWCC 1 cut(s) 901
BmgT120I GGNCC 1 cut(s) 901
BmiI GGNNCC 1 cut(s) 785
BmsI GCATC 2 cut(s) 13, 86
BpiI GAAGAC 1 cut(s) 771
BplI GAGNNNNNCTC 2 cut(s) 392, 424
Bpu14I TTCGAA 1 cut(s) 235
BpuEI CTTGAG 1 cut(s) 260
BsaI GGTCTC 2 cut(s) 526, 534
BsaJI CCNNGG 1 cut(s) 618
BsaWI WCCGGW 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 31
BseAI TCCGGA 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 618
BseGI GGATG 3 cut(s) 4, 21, 77
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMII CTCAG 2 cut(s) 351, 510
BseRI GAGGAG 1 cut(s) 569
BseX3I CGGCCG 1 cut(s) 615
BseXI GCAGC 3 cut(s) 40, 147, 436
Bsh1285I CGRYCG 1 cut(s) 618
BshFI GGCC 1 cut(s) 617
BsiEI CGRYCG 1 cut(s) 618
BsiSI CCGG 2 cut(s) 81, 411
BslI CCNNNNNNNGG 1 cut(s) 31
BsmAI GTCTC 4 cut(s) 114, 526, 534, 551
BsnI GGCC 1 cut(s) 617
Bso31I GGTCTC 2 cut(s) 526, 534
Bsp119I TTCGAA 1 cut(s) 235
Bsp13I TCCGGA 1 cut(s) 80
Bsp143I GATC 5 cut(s) 405, 435, 586, 783, 911
BspANI GGCC 1 cut(s) 617
BspCNI CTCAG 2 cut(s) 352, 511
BspEI TCCGGA 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 785
BspMI ACCTGC 1 cut(s) 454
BspPI GGATC 3 cut(s) 778, 791, 906
BspT104I TTCGAA 1 cut(s) 235
BspTNI GGTCTC 2 cut(s) 526, 534
BssECI CCNNGG 1 cut(s) 618
BssMI GATC 5 cut(s) 405, 435, 586, 783, 911
BssNAI GTATAC 1 cut(s) 625
Bst1107I GTATAC 1 cut(s) 625
Bst4CI ACNGT 4 cut(s) 126, 157, 187, 562
Bst6I CTCTTC 1 cut(s) 524
BstBI TTCGAA 1 cut(s) 235
BstC8I GCNNGC 2 cut(s) 707, 750
BstDEI CTNAG 5 cut(s) 360, 519, 634, 737, 879
BstENI CCTNNNNNAGG 1 cut(s) 29
BstF5I GGATG 3 cut(s) 4, 21, 77
BstKTI GATC 5 cut(s) 408, 438, 589, 786, 914
BstMAI GTCTC 4 cut(s) 114, 526, 534, 551
BstMBI GATC 5 cut(s) 405, 435, 586, 783, 911
BstMCI CGRYCG 1 cut(s) 618
BstMWI GCNNNNNNNGC 2 cut(s) 62, 166
BstV1I GCAGC 3 cut(s) 40, 147, 436
BstV2I GAAGAC 1 cut(s) 771
BstX2I RGATCY 1 cut(s) 783
BstXI CCANNNNNNTGG 1 cut(s) 28
BstYI RGATCY 1 cut(s) 783
BstZ17I GTATAC 1 cut(s) 625
BstZI CGGCCG 1 cut(s) 615
BsuRI GGCC 1 cut(s) 617
BtsCI GGATG 3 cut(s) 4, 21, 77
BtsI GCAGTG 2 cut(s) 49, 765
BtsIMutI CAGTG 3 cut(s) 49, 567, 765
BveI ACCTGC 1 cut(s) 454
Cac8I GCNNGC 2 cut(s) 707, 750
Cfr13I GGNCC 1 cut(s) 901
CviAII CATG 4 cut(s) 304, 368, 485, 545
CviJI RGCY 6 cut(s) 53, 65, 602, 617, 797, 890
CviKI_1 RGCY 6 cut(s) 53, 65, 602, 617, 797, 890
DdeI CTNAG 5 cut(s) 360, 519, 634, 737, 879
DpnI GATC 5 cut(s) 407, 437, 588, 785, 913
DpnII GATC 5 cut(s) 405, 435, 586, 783, 911
DraI TTTAAA 1 cut(s) 388
EaeI YGGCCR 1 cut(s) 615
EagI CGGCCG 1 cut(s) 615
Eam1104I CTCTTC 1 cut(s) 524
EarI CTCTTC 1 cut(s) 524
EclXI CGGCCG 1 cut(s) 615
Eco31I GGTCTC 2 cut(s) 526, 534
Eco47I GGWCC 1 cut(s) 901
Eco52I CGGCCG 1 cut(s) 615
Eco57I CTGAAG 1 cut(s) 777
EcoNI CCTNNNNNAGG 1 cut(s) 29
EcoRI GAATTC 1 cut(s) 580
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 307, 371, 488, 548
FatI CATG 4 cut(s) 303, 367, 484, 544
FauNDI CATATG 1 cut(s) 90
FbaI TGATCA 1 cut(s) 435
FblI GTMKAC 1 cut(s) 624
Fnu4HI GCNGC 3 cut(s) 54, 161, 450
FokI GGATG 2 cut(s) 8, 64
Fsp4HI GCNGC 3 cut(s) 54, 161, 450
FspBI CTAG 3 cut(s) 57, 347, 891
GluI GCNGC 3 cut(s) 54, 161, 450
HaeIII GGCC 1 cut(s) 617
HapII CCGG 2 cut(s) 81, 411
Hin1II CATG 4 cut(s) 307, 371, 488, 548
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 4 cut(s) 203, 508, 629, 862
HpaII CCGG 2 cut(s) 81, 411
HphI GGTGA 4 cut(s) 46, 227, 679, 728
Hpy166II GTNNAC 3 cut(s) 253, 332, 625
Hpy188I TCNGA 2 cut(s) 520, 586
Hpy188III TCNNGA 4 cut(s) 25, 81, 315, 781
Hpy8I GTNNAC 3 cut(s) 253, 332, 625
HpyAV CCTTC 4 cut(s) 242, 330, 525, 695
HpyCH4III ACNGT 4 cut(s) 126, 157, 187, 562
HpyCH4IV ACGT 1 cut(s) 353
HpyCH4V TGCA 4 cut(s) 4, 648, 748, 813
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 166
HpyF3I CTNAG 5 cut(s) 360, 519, 634, 737, 879
HpySE526I ACGT 1 cut(s) 353
Hsp92II CATG 4 cut(s) 307, 371, 488, 548
Kpn2I TCCGGA 1 cut(s) 80
Ksp22I TGATCA 1 cut(s) 435
Kzo9I GATC 5 cut(s) 405, 435, 586, 783, 911
LpnPI CCDG 8 cut(s) 38, 94, 183, 192, 241, 424, 459, 766
Lsp1109I GCAGC 3 cut(s) 40, 147, 436
LweI GCATC 2 cut(s) 13, 86
MaeI CTAG 3 cut(s) 57, 347, 891
MaeII ACGT 1 cut(s) 353
MaeIII GTNAC 3 cut(s) 181, 226, 831
MalI GATC 5 cut(s) 407, 437, 588, 785, 913
MboI GATC 5 cut(s) 405, 435, 586, 783, 911
MboII GAAGA 6 cut(s) 59, 541, 776, 868, 871, 899
MfeI CAATTG 2 cut(s) 117, 686
MflI RGATCY 1 cut(s) 783
MluCI AATT 7 cut(s) 117, 476, 580, 686, 710, 776, 839
MlyI GAGTC 2 cut(s) 212, 502
MmeI TCCRAC 2 cut(s) 360, 524
MnlI CCTC 8 cut(s) 25, 507, 547, 613, 652, 748, 822, 892
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 80
MroXI GAANNNNTTC 2 cut(s) 480, 776
MseI TTAA 2 cut(s) 387, 919
MslI CAYNNNNRTG 2 cut(s) 26, 549
MspI CCGG 2 cut(s) 81, 411
MunI CAATTG 2 cut(s) 117, 686
MwoI GCNNNNNNNGC 2 cut(s) 62, 166
NdeI CATATG 1 cut(s) 90
NdeII GATC 5 cut(s) 405, 435, 586, 783, 911
NlaIII CATG 4 cut(s) 307, 371, 488, 548
NlaIV GGNNCC 1 cut(s) 785
NmeAIII GCCGAG 1 cut(s) 643
NmuCI GTSAC 2 cut(s) 181, 226
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 235
PdmI GAANNNNTTC 2 cut(s) 480, 776
PfeI GAWTC 2 cut(s) 629, 862
PflFI GACNNNGTC 1 cut(s) 262
PkrI GCNGC 3 cut(s) 55, 162, 451
PleI GAGTC 2 cut(s) 211, 502
PpsI GAGTC 2 cut(s) 211, 502
PspN4I GGNNCC 1 cut(s) 785
PspPI GGNCC 1 cut(s) 901
PsuI RGATCY 1 cut(s) 783
PsyI GACNNNGTC 1 cut(s) 262
RseI CAYNNNNRTG 2 cut(s) 26, 549
SaqAI TTAA 2 cut(s) 387, 919
SatI GCNGC 3 cut(s) 54, 161, 450
Sau3AI GATC 5 cut(s) 405, 435, 586, 783, 911
Sau96I GGNCC 1 cut(s) 901
SchI GAGTC 2 cut(s) 212, 502
SfaNI GCATC 2 cut(s) 13, 86
SfuI TTCGAA 1 cut(s) 235
SinI GGWCC 1 cut(s) 901
SmiMI CAYNNNNRTG 2 cut(s) 26, 549
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 7 cut(s) 117, 476, 580, 686, 710, 776, 839
SspI AATATT 1 cut(s) 727
SspMI CTAG 3 cut(s) 57, 347, 891
TaaI ACNGT 4 cut(s) 126, 157, 187, 562
TaiI ACGT 1 cut(s) 356
TaqI TCGA 4 cut(s) 11, 222, 235, 910
TasI AATT 7 cut(s) 117, 476, 580, 686, 710, 776, 839
TfiI GAWTC 2 cut(s) 629, 862
Tru1I TTAA 2 cut(s) 387, 919
Tru9I TTAA 2 cut(s) 387, 919
TscAI CASTG 3 cut(s) 49, 567, 765
TseFI GTSAC 2 cut(s) 181, 226
TseI GCWGC 3 cut(s) 53, 160, 449
Tsp45I GTSAC 2 cut(s) 181, 226
TspDTI ATGAA 4 cut(s) 297, 473, 474, 612
TspRI CASTG 3 cut(s) 49, 567, 765
Tth111I GACNNNGTC 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 901
XagI CCTNNNNNAGG 1 cut(s) 29
XapI RAATTY 2 cut(s) 580, 776
XmiI GTMKAC 1 cut(s) 624
XmnI GAANNNNTTC 2 cut(s) 480, 776
XspI CTAG 3 cut(s) 57, 347, 891
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.