Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002270

Physical Location & Seq

Genomic Coordinates Reverse (-)

55487122 .. 55488464

Gene Structure 1343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0433400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGTTACAACCTCCAACACTAATGCAAATAACTTTATAGTCGTCGGTTATGAACCATTTGGTTTTGTAGGTTATGAACCATTAACTTTGAACATCAATAGCTCTCTGGCTGATCAGGAGGATGGGGCTTGTTCTGGTATTGGCTGTGGCCATTCCTCCATTCCAAGAGGCATCGAGTACTTTTTTCCGAAGGAGGCAGAGAGTATAGTAAACATAACTTTATTATCCATGTATTTCTGGTTTACCATGAGACATAGTGTTACTGGTACACCATCCAAGTCCAGCCTCATCTTTCCTTTGTCCATGACAGCAGCTGCACTTGCTTATCTGCATTCTGCATCAATCATCCATGGAAATGTCAAGTCTTCCAACATATTGTTAACTGATTGTTTTGTGGCCAAAGTCATCGGTTTTGGACCTTCGAGGTTAGTCCCTAGTAATGAATCACAGATAAGCACATTGGTTCGGAGGACACTAGGCTATCTAGACCCGAAGTATTTTCATAAAGGCCAATTGACAGATAAAAGCGATGTTTACAGCTTTGGAATGGTTTTGTTAGAGATTGTAACAGGAGAGAAGCCAATATCATTTGGTAGACCAGAAAGTCAAAGAATCATGTCTTCCCATTTTGTATCGTCCATGGAGTTACAAAGTGGTCTGTTTGATCAGATTGTTGGGTCACAAGTCATAAAACAGGGACACAGAGAACAAGTCAGAGCAGTAGCTGAGCTTGCAAAGAGATGCCTCAGTCTGAGTAGTGCAGAAGGACCTGATATGGAAGACGTGGCCAGGAAGTTGAAAATGTTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

270

Amino Acids

29.53

Weight (kDa)

6.65

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	97 - 253	5.1e-18	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	100 - 266	1e-17	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04060
malus_domestica	MD06G1101600.v1.1 MD06G1101700.v1.1 MD06G1101900.v1.1 MD14G1121200.v1.1
prunus_persica	Prupe.5G115000_v2.0.a1 Prupe.5G115000_v2.0.a1 Prupe.5G115000_v2.0.a1
pyrus_communis	pycom06g09680
rosa_chinensis	RchiOBHm_Chr5g0001951 RchiOBHm_Chr7g0195461
rosa_laevigata	RLG00000002439 RLG00000004119 RLG00000022620 RLG00000028643 RLG00000028651 RLG00000032833 RLG00000033240
rosa_multiflora	Rmu_sc0000317.1_g000011 Rmu_sc0018163.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094000 Rroxscaffold_3G00260460 Rroxscaffold_5G00357160
rosa_rugosa	Rorug02G0433400 Rorug07G0023400
rosa_samantha	Rh2AG537600 Rh2BG632300 Rh2DG488700 Rh2DG645100 Rh3BG060600 Rh3CG059400 Rh6AG052600 Rh6AG097200 Rh6CG084100 Rh6CG182500 Rh6DG080300 Rh6DG173900 Rh7AG150900 Rh7BG152600 Rh7CG156100 Rh7CG185200 Rh7DG151900
rosa_wichuraiana	Rw7G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	603
AccI	GTMKAC	1 cut(s)	595
AcoI	YGGCCR	3 cut(s)	148, 396, 786
AfaI	GTAC	2 cut(s)	179, 268
AgsI	TTSAA	2 cut(s)	91, 799
AjiI	CACGTC	1 cut(s)	784
AjnI	CCWGG	1 cut(s)	788
AluBI	AGCT	5 cut(s)	102, 314, 540, 725, 730
AluI	AGCT	5 cut(s)	102, 314, 540, 725, 730
Alw26I	GTCTC	1 cut(s)	244
AlwNI	CAGNNNCTG	2 cut(s)	314, 725
AoxI	GGCC	4 cut(s)	148, 396, 508, 786
ApeKI	GCWGC	2 cut(s)	311, 314
AspS9I	GGNCC	2 cut(s)	416, 767
AvaII	GGWCC	2 cut(s)	416, 767
BalI	TGGCCA	3 cut(s)	150, 398, 788
BbsI	GAAGAC	3 cut(s)	357, 612, 786
BbvI	GCAGC	2 cut(s)	301, 323
BccI	CCATC	2 cut(s)	116, 280
BciT130I	CCWGG	1 cut(s)	790
BclI	TGATCA	2 cut(s)	112, 664
BcoDI	GTCTC	1 cut(s)	244
BfaI	CTAG	3 cut(s)	435, 476, 485
BisI	GCNGC	2 cut(s)	312, 315
BlpI	GCTNAGC	1 cut(s)	726
BlsI	GCNGC	2 cut(s)	313, 316
BmcAI	AGTACT	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	790
Bme18I	GGWCC	2 cut(s)	416, 767
BmgBI	CACGTC	1 cut(s)	784
BmgT120I	GGNCC	2 cut(s)	416, 767
BmrFI	CCNGG	1 cut(s)	790
BmsI	GCATC	3 cut(s)	180, 347, 731
BpiI	GAAGAC	3 cut(s)	357, 612, 786
Bpu1102I	GCTNAGC	1 cut(s)	726
BsaJI	CCNNGG	2 cut(s)	349, 639
Bse1I	ACTGG	1 cut(s)	268
BseBI	CCWGG	1 cut(s)	790
BseDI	CCNNGG	2 cut(s)	349, 639
BseGI	GGATG	3 cut(s)	127, 272, 345
BseMII	CTCAG	3 cut(s)	717, 743, 760
BseNI	ACTGG	1 cut(s)	268
BseXI	GCAGC	2 cut(s)	301, 323
BsgI	GTGCAG	2 cut(s)	300, 780
BshFI	GGCC	4 cut(s)	150, 398, 510, 788
BslFI	GGGAC	2 cut(s)	416, 711
BsmAI	GTCTC	1 cut(s)	244
BsmFI	GGGAC	2 cut(s)	416, 711
BsmI	GAATGC	1 cut(s)	331
BsnI	GGCC	4 cut(s)	150, 398, 510, 788
Bsp143I	GATC	2 cut(s)	112, 664
Bsp1720I	GCTNAGC	1 cut(s)	726
Bsp19I	CCATGG	2 cut(s)	349, 639
BspANI	GGCC	4 cut(s)	150, 398, 510, 788
BspCNI	CTCAG	3 cut(s)	718, 744, 759
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	2 cut(s)	349, 639
BssMI	GATC	2 cut(s)	112, 664
BssT1I	CCWWGG	2 cut(s)	349, 639
Bst2UI	CCWGG	1 cut(s)	790
BstC8I	GCNNGC	1 cut(s)	732
BstDEI	CTNAG	3 cut(s)	726, 746, 752
BstDSI	CCRYGG	2 cut(s)	349, 639
BstF5I	GGATG	3 cut(s)	127, 272, 345
BstKTI	GATC	2 cut(s)	115, 667
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	2 cut(s)	112, 664
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 731
BstNI	CCWGG	1 cut(s)	790
BstSCI	CCNGG	1 cut(s)	788
BstV1I	GCAGC	2 cut(s)	301, 323
BstV2I	GAAGAC	3 cut(s)	357, 612, 786
BsuRI	GGCC	4 cut(s)	150, 398, 510, 788
BtgI	CCRYGG	2 cut(s)	349, 639
BtgZI	GCGATG	1 cut(s)	543
BtrI	CACGTC	1 cut(s)	784
BtsCI	GGATG	3 cut(s)	127, 272, 345
Cac8I	GCNNGC	1 cut(s)	732
CaiI	CAGNNNCTG	2 cut(s)	314, 725
Cfr13I	GGNCC	2 cut(s)	416, 767
Csp6I	GTAC	2 cut(s)	178, 267
CviAII	CATG	6 cut(s)	229, 247, 304, 350, 616, 640
CviQI	GTAC	2 cut(s)	178, 267
DdeI	CTNAG	3 cut(s)	726, 746, 752
DpnI	GATC	2 cut(s)	114, 666
DpnII	GATC	2 cut(s)	112, 664
DrdI	GACNNNNNNGTC	1 cut(s)	603
DseDI	GACNNNNNNGTC	1 cut(s)	603
EaeI	YGGCCR	3 cut(s)	148, 396, 786
Eco130I	CCWWGG	2 cut(s)	349, 639
Eco47I	GGWCC	2 cut(s)	416, 767
EcoO109I	RGGNCCY	1 cut(s)	767
EcoRII	CCWGG	1 cut(s)	788
EcoT14I	CCWWGG	2 cut(s)	349, 639
ErhI	CCWWGG	2 cut(s)	349, 639
FaeI	CATG	6 cut(s)	232, 250, 307, 353, 619, 643
FaqI	GGGAC	2 cut(s)	416, 711
FatI	CATG	6 cut(s)	228, 246, 303, 349, 615, 639
FbaI	TGATCA	2 cut(s)	112, 664
FblI	GTMKAC	1 cut(s)	595
Fnu4HI	GCNGC	2 cut(s)	312, 315
FokI	GGATG	3 cut(s)	134, 259, 332
Fsp4HI	GCNGC	2 cut(s)	312, 315
FspBI	CTAG	3 cut(s)	435, 476, 485
GluI	GCNGC	2 cut(s)	312, 315
HaeIII	GGCC	4 cut(s)	150, 398, 510, 788
Hin1II	CATG	6 cut(s)	232, 250, 307, 353, 619, 643
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HinfI	GANTC	2 cut(s)	443, 612
HpaI	GTTAAC	1 cut(s)	381
Hpy166II	GTNNAC	6 cut(s)	211, 243, 269, 381, 535, 596
Hpy188I	TCNGA	5 cut(s)	189, 468, 669, 716, 753
Hpy188III	TCNNGA	2 cut(s)	116, 485
Hpy8I	GTNNAC	6 cut(s)	211, 243, 269, 381, 535, 596
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	3 cut(s)	184, 429, 758
HpyCH4IV	ACGT	1 cut(s)	783
HpyCH4V	TGCA	6 cut(s)	26, 317, 331, 338, 734, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 731
HpyF3I	CTNAG	3 cut(s)	726, 746, 752
HpySE526I	ACGT	1 cut(s)	783
Hsp92II	CATG	6 cut(s)	232, 250, 307, 353, 619, 643
Ksp22I	TGATCA	2 cut(s)	112, 664
KspAI	GTTAAC	1 cut(s)	381
Kzo9I	GATC	2 cut(s)	112, 664
Lsp1109I	GCAGC	2 cut(s)	301, 323
LweI	GCATC	3 cut(s)	180, 347, 731
MaeI	CTAG	3 cut(s)	435, 476, 485
MaeII	ACGT	1 cut(s)	783
MaeIII	GTNAC	5 cut(s)	4, 259, 565, 645, 678
MalI	GATC	2 cut(s)	114, 666
MboI	GATC	2 cut(s)	112, 664
MboII	GAAGA	3 cut(s)	357, 612, 791
MfeI	CAATTG	1 cut(s)	512
MlsI	TGGCCA	3 cut(s)	150, 398, 788
MluCI	AATT	1 cut(s)	512
MluNI	TGGCCA	3 cut(s)	150, 398, 788
MmeI	TCCRAC	2 cut(s)	39, 393
MnlI	CCTC	9 cut(s)	22, 112, 161, 166, 187, 296, 417, 462, 755
Mox20I	TGGCCA	3 cut(s)	150, 398, 788
MscI	TGGCCA	3 cut(s)	150, 398, 788
MseI	TTAA	2 cut(s)	83, 380
MslI	CAYNNNNRTG	1 cut(s)	354
Msp20I	TGGCCA	3 cut(s)	150, 398, 788
MspA1I	CMGCKG	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	790
MunI	CAATTG	1 cut(s)	512
Mva1269I	GAATGC	1 cut(s)	331
MvaI	CCWGG	1 cut(s)	790
MwoI	GCNNNNNNNGC	2 cut(s)	320, 731
NcoI	CCATGG	2 cut(s)	349, 639
NdeII	GATC	2 cut(s)	112, 664
NlaIII	CATG	6 cut(s)	232, 250, 307, 353, 619, 643
NmuCI	GTSAC	1 cut(s)	678
PctI	GAATGC	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	443, 612
PkrI	GCNGC	2 cut(s)	313, 316
PpuMI	RGGWCCY	1 cut(s)	767
Psp5II	RGGWCCY	1 cut(s)	767
Psp6I	CCWGG	1 cut(s)	788
PspGI	CCWGG	1 cut(s)	788
PspPI	GGNCC	2 cut(s)	416, 767
PspPPI	RGGWCCY	1 cut(s)	767
PstNI	CAGNNNCTG	2 cut(s)	314, 725
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	2 cut(s)	179, 268
RsaNI	GTAC	2 cut(s)	178, 267
RseI	CAYNNNNRTG	1 cut(s)	354
SaqAI	TTAA	2 cut(s)	83, 380
SatI	GCNGC	2 cut(s)	312, 315
Sau3AI	GATC	2 cut(s)	112, 664
Sau96I	GGNCC	2 cut(s)	416, 767
ScaI	AGTACT	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	790
SfaNI	GCATC	3 cut(s)	180, 347, 731
SinI	GGWCC	2 cut(s)	416, 767
SmiMI	CAYNNNNRTG	1 cut(s)	354
Sse9I	AATT	1 cut(s)	512
SspMI	CTAG	3 cut(s)	435, 476, 485
StyD4I	CCNGG	1 cut(s)	788
StyI	CCWWGG	2 cut(s)	349, 639
TaiI	ACGT	1 cut(s)	786
TaqI	TCGA	2 cut(s)	174, 422
TasI	AATT	1 cut(s)	512
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	2 cut(s)	443, 612
Tru1I	TTAA	2 cut(s)	83, 380
Tru9I	TTAA	2 cut(s)	83, 380
TseFI	GTSAC	1 cut(s)	678
TseI	GCWGC	2 cut(s)	311, 314
Tsp45I	GTSAC	1 cut(s)	678
TspDTI	ATGAA	4 cut(s)	66, 90, 456, 491
VpaK11BI	GGWCC	2 cut(s)	416, 767
XbaI	TCTAGA	1 cut(s)	484
XmiI	GTMKAC	1 cut(s)	595
XspI	CTAG	3 cut(s)	435, 476, 485
ZrmI	AGTACT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.