Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002270

Physical Location & Seq

Genomic Coordinates Forward (+)

29492367 .. 29492744

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG182500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCTAACTACATGGCATCATCTCGTTCACTCAATCACCACACTCAAATATGCAGAGCACCAAATTCCGACTCCGCTCACAGAACCTCACTGGAACCCGGCACAGCAGCAAGAGATGGCCGAGGACGGCAGTTCAATAGTTGCAGAGTTGGACCGAGCGGCAGAGGGATTGTCATCCAGAGAAGCGGAGCTAAGGCAAGAGATTGAGCAACACAAGCACGAAAAGGCGGTGCCGGAGGAGAAGCACCAATTCGAGATTCTAGAGAGGCTGAAGGTGAAGGACGAGCTCCGGAGCCAAGCTGCTGATAATGGAGCAGTTCCAGGAGACCGTTGCCTCCATCGTCTCCTTCAAGGTCGAGTCCGACATCATGTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 PMD

Protein Analysis

125

Amino Acids

14.38

Weight (kDa)

5.97

Isoelectric Point (pI)

58.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04060
malus_domestica	MD06G1101600.v1.1 MD06G1101700.v1.1 MD06G1101900.v1.1 MD14G1121200.v1.1
prunus_persica	Prupe.5G115000_v2.0.a1 Prupe.5G115000_v2.0.a1 Prupe.5G115000_v2.0.a1
pyrus_communis	pycom06g09680
rosa_chinensis	RchiOBHm_Chr5g0001951 RchiOBHm_Chr7g0195461
rosa_laevigata	RLG00000002439 RLG00000004119 RLG00000022620 RLG00000028643 RLG00000028651 RLG00000032833 RLG00000033240
rosa_multiflora	Rmu_sc0000317.1_g000011 Rmu_sc0018163.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094000 Rroxscaffold_3G00260460 Rroxscaffold_5G00357160
rosa_rugosa	Rorug02G0433400 Rorug07G0023400
rosa_samantha	Rh2AG537600 Rh2BG632300 Rh2DG488700 Rh2DG645100 Rh3BG060600 Rh3CG059400 Rh6AG052600 Rh6AG097200 Rh6CG084100 Rh6CG182500 Rh6DG080300 Rh6DG173900 Rh7AG150900 Rh7BG152600 Rh7CG156100 Rh7CG185200 Rh7DG151900
rosa_wichuraiana	Rw7G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	229
AccBSI	CCGCTC	2 cut(s)	76, 158
AccIII	TCCGGA	1 cut(s)	288
AciI	CCGC	4 cut(s)	74, 158, 185, 227
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	135, 350
AjnI	CCWGG	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	2 cut(s)	240, 272
AluBI	AGCT	3 cut(s)	190, 286, 299
AluI	AGCT	3 cut(s)	190, 286, 299
Alw21I	GWGCWC	2 cut(s)	60, 288
Alw26I	GTCTC	2 cut(s)	318, 347
Aor13HI	TCCGGA	1 cut(s)	288
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	2 cut(s)	106, 299
ApoI	RAATTY	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	151
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	2 cut(s)	28, 286
AvaII	GGWCC	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	288
Bbv12I	GWGCWC	2 cut(s)	60, 288
BbvI	GCAGC	2 cut(s)	118, 286
BccI	CCATC	2 cut(s)	109, 345
BceAI	ACGGC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	321
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	2 cut(s)	318, 347
BfaI	CTAG	1 cut(s)	260
BisI	GCNGC	3 cut(s)	107, 159, 300
BlsI	GCNGC	3 cut(s)	108, 160, 301
Bme1390I	CCNGG	2 cut(s)	98, 321
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	3 cut(s)	95, 231, 293
BmrFI	CCNGG	2 cut(s)	98, 321
BmsI	GCATC	1 cut(s)	25
Bpu10I	CCTNAGC	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	98
BsaBI	GATNNNNATC	1 cut(s)	172
BsaI	GGTCTC	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	288
Bse1I	ACTGG	1 cut(s)	95
Bse8I	GATNNNNATC	1 cut(s)	172
BseAI	TCCGGA	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	173
BseJI	GATNNNNATC	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	2 cut(s)	118, 286
BshFI	GGCC	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	229
BsiHKAI	GWGCWC	2 cut(s)	60, 288
BsiSI	CCGG	3 cut(s)	98, 233, 289
BsmAI	GTCTC	2 cut(s)	318, 347
BsmBI	CGTCTC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	119
Bso31I	GGTCTC	1 cut(s)	318
Bsp1286I	GDGCHC	2 cut(s)	60, 288
Bsp13I	TCCGGA	1 cut(s)	288
BspACI	CCGC	4 cut(s)	74, 158, 185, 227
BspANI	GGCC	1 cut(s)	119
BspEI	TCCGGA	1 cut(s)	288
BspLI	GGNNCC	3 cut(s)	95, 231, 293
BspT107I	GGYRCC	1 cut(s)	229
BspTNI	GGTCTC	1 cut(s)	318
BsrBI	CCGCTC	2 cut(s)	76, 158
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	329
BstDEI	CTNAG	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	173
BstMAI	GTCTC	2 cut(s)	318, 347
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	2 cut(s)	96, 319
BstV1I	GCAGC	2 cut(s)	118, 286
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	151
CviAII	CATG	2 cut(s)	12, 368
CviJI	RGCY	6 cut(s)	119, 190, 268, 286, 294, 299
CviKI_1	RGCY	6 cut(s)	119, 190, 268, 286, 294, 299
DdeI	CTNAG	1 cut(s)	191
EaeI	YGGCCR	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	288
Eco31I	GGTCTC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	288
Esp3I	CGTCTC	1 cut(s)	347
FaeI	CATG	2 cut(s)	15, 371
FaiI	YATR	3 cut(s)	13, 51, 369
FatI	CATG	2 cut(s)	11, 367
Fnu4HI	GCNGC	3 cut(s)	107, 159, 300
FokI	GGATG	1 cut(s)	160
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	3 cut(s)	107, 159, 300
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	3 cut(s)	107, 159, 300
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	3 cut(s)	98, 233, 289
Hin1II	CATG	2 cut(s)	15, 371
HinfI	GANTC	3 cut(s)	70, 256, 357
HpaII	CCGG	3 cut(s)	98, 233, 289
HphI	GGTGA	2 cut(s)	28, 286
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	2 cut(s)	69, 362
Hpy188III	TCNNGA	4 cut(s)	177, 253, 260, 289
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	3 cut(s)	265, 271, 356
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	2 cut(s)	53, 143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpyF3I	CTNAG	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	15, 371
Kpn2I	TCCGGA	1 cut(s)	288
LmnI	GCTCC	4 cut(s)	187, 291, 291, 311
LpnPI	CCDG	7 cut(s)	76, 111, 190, 246, 302, 306, 333
Lsp1109I	GCAGC	2 cut(s)	118, 286
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	1 cut(s)	260
MbiI	CCGCTC	2 cut(s)	76, 158
MhlI	GDGCHC	2 cut(s)	60, 288
MluCI	AATT	2 cut(s)	63, 248
MlyI	GAGTC	2 cut(s)	64, 366
MmeI	TCCRAC	2 cut(s)	92, 129
MnlI	CCTC	6 cut(s)	96, 115, 157, 229, 258, 344
MroI	TCCGGA	1 cut(s)	288
MspI	CCGG	3 cut(s)	98, 233, 289
MspR9I	CCNGG	2 cut(s)	98, 321
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	214
NciI	CCSGG	1 cut(s)	98
NlaIII	CATG	2 cut(s)	15, 371
NlaIV	GGNNCC	3 cut(s)	95, 231, 293
NmeAIII	GCCGAG	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	256
PfoI	TCCNGGA	1 cut(s)	319
PkrI	GCNGC	3 cut(s)	108, 160, 301
PleI	GAGTC	2 cut(s)	64, 365
PpsI	GAGTC	2 cut(s)	64, 365
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	3 cut(s)	95, 231, 293
PspPI	GGNCC	1 cut(s)	151
SacI	GAGCTC	1 cut(s)	288
SatI	GCNGC	3 cut(s)	107, 159, 300
Sau96I	GGNCC	1 cut(s)	151
SchI	GAGTC	2 cut(s)	64, 366
ScrFI	CCNGG	2 cut(s)	98, 321
SduI	GDGCHC	2 cut(s)	60, 288
SetI	ASST	6 cut(s)	88, 192, 276, 288, 301, 355
SfaNI	GCATC	1 cut(s)	25
SinI	GGWCC	1 cut(s)	151
Sse9I	AATT	2 cut(s)	63, 248
SsiI	CCGC	4 cut(s)	74, 158, 185, 227
SspMI	CTAG	1 cut(s)	260
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	2 cut(s)	96, 319
TaaI	ACNGT	1 cut(s)	329
TaqI	TCGA	2 cut(s)	252, 355
TaqII	GACCGA	1 cut(s)	168
TasI	AATT	2 cut(s)	63, 248
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	256
TscAI	CASTG	1 cut(s)	95
TseI	GCWGC	2 cut(s)	106, 299
TspRI	CASTG	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	151
XapI	RAATTY	1 cut(s)	63
XbaI	TCTAGA	1 cut(s)	259
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.