Rh3CG059400

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0002270
Physical Location & Seq
Forward (+)
4111345 .. 4111608
264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG059400.1

Sequence Viewer

Length: 264 bp
ATGGCCGAGGACGGCAGTTCAATAGTTACAGAGTTGGACCGAATGGCAGAGGGATTGTCATCCAGAGAAGCGGAGCTAAGGCAAGAGATTGAGCAACACAAGCACGAAAAGGCGGTGCCGGAGGAGAAGCACCAATTCGAGATTCTAGAGAGGCTGAAGGTGAAGGACGAGCTCCGGAGCCAAGCTGCTGATAATGGAGCAGTTCTCGGAGACCGTTGCCTCCATCGTCTCCTTCAAGGTCGAGTCCGACGTCATGTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

87

Amino Acids

10.01

Weight (kDa)

5.94

Isoelectric Point (pI)

70.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 253
AccB1I GGYRCC 1 cut(s) 115
AccIII TCCGGA 1 cut(s) 174
AciI CCGC 2 cut(s) 71, 113
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 250
AgsI TTSAA 2 cut(s) 21, 236
AjuI GAANNNNNNNTTGG 2 cut(s) 126, 158
AluBI AGCT 3 cut(s) 76, 172, 185
AluI AGCT 3 cut(s) 76, 172, 185
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 2 cut(s) 204, 233
Aor13HI TCCGGA 1 cut(s) 174
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 172
AvaII GGWCC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 115
BanII GRGCYC 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 172
BccI CCATC 1 cut(s) 231
BceAI ACGGC 1 cut(s) 28
BcoDI GTCTC 2 cut(s) 204, 233
BfaI CTAG 1 cut(s) 146
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 2 cut(s) 117, 179
BplI GAGNNNNNCTC 2 cut(s) 189, 221
Bpu10I CCTNAGC 1 cut(s) 77
BsaBI GATNNNNATC 1 cut(s) 58
BsaHI GRCGYC 1 cut(s) 250
BsaI GGTCTC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 6
BsaWI WCCGGW 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 58
BseAI TCCGGA 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 1 cut(s) 59
BseJI GATNNNNATC 1 cut(s) 58
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 172
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 174
BsiSI CCGG 2 cut(s) 119, 175
BsmAI GTCTC 2 cut(s) 204, 233
BsmBI CGTCTC 1 cut(s) 233
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 174
Bsp13I TCCGGA 1 cut(s) 174
BspACI CCGC 2 cut(s) 71, 113
BspANI GGCC 1 cut(s) 5
BspEI TCCGGA 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 117, 179
BspT107I GGYRCC 1 cut(s) 115
BspTNI GGTCTC 1 cut(s) 204
BssECI CCNNGG 1 cut(s) 6
BssNI GRCGYC 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 215
BstACI GRCGYC 1 cut(s) 250
BstDEI CTNAG 1 cut(s) 77
BstF5I GGATG 1 cut(s) 59
BstMAI GTCTC 2 cut(s) 204, 233
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 172
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 37
CviAII CATG 1 cut(s) 254
CviJI RGCY 6 cut(s) 5, 76, 154, 172, 180, 185
CviKI_1 RGCY 6 cut(s) 5, 76, 154, 172, 180, 185
DdeI CTNAG 1 cut(s) 77
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 174
Eco31I GGTCTC 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 37
Eco53kI GAGCTC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 233
FaeI CATG 1 cut(s) 257
FaiI YATR 1 cut(s) 255
FatI CATG 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 1 cut(s) 46
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 1 cut(s) 146
GluI GCNGC 1 cut(s) 186
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 119, 175
Hin1I GRCGYC 1 cut(s) 250
Hin1II CATG 1 cut(s) 257
HinfI GANTC 2 cut(s) 142, 243
HpaII CCGG 2 cut(s) 119, 175
HphI GGTGA 1 cut(s) 172
Hpy188I TCNGA 2 cut(s) 209, 248
Hpy188III TCNNGA 4 cut(s) 63, 139, 146, 175
Hpy99I CGWCG 1 cut(s) 252
HpyAV CCTTC 3 cut(s) 151, 157, 242
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4IV ACGT 1 cut(s) 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 1 cut(s) 250
Hsp92I GRCGYC 1 cut(s) 250
Hsp92II CATG 1 cut(s) 257
Kpn2I TCCGGA 1 cut(s) 174
LmnI GCTCC 4 cut(s) 73, 177, 177, 197
LpnPI CCDG 3 cut(s) 76, 132, 188
Lsp1109I GCAGC 1 cut(s) 172
MaeI CTAG 1 cut(s) 146
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 1 cut(s) 134
MlyI GAGTC 1 cut(s) 252
MmeI TCCRAC 1 cut(s) 15
MnlI CCTC 4 cut(s) 43, 115, 144, 230
MroI TCCGGA 1 cut(s) 174
MspI CCGG 2 cut(s) 119, 175
MwoI GCNNNNNNNGC 1 cut(s) 100
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 2 cut(s) 117, 179
NmeAIII GCCGAG 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 247
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
Psp124BI GAGCTC 1 cut(s) 174
PspN4I GGNNCC 2 cut(s) 117, 179
PspPI GGNCC 1 cut(s) 37
SacI GAGCTC 1 cut(s) 174
SatI GCNGC 1 cut(s) 186
Sau96I GGNCC 1 cut(s) 37
SchI GAGTC 1 cut(s) 252
SduI GDGCHC 1 cut(s) 174
SetI ASST 6 cut(s) 78, 162, 174, 187, 241, 253
SinI GGWCC 1 cut(s) 37
Sse9I AATT 1 cut(s) 134
SsiI CCGC 2 cut(s) 71, 113
SspMI CTAG 1 cut(s) 146
SstI GAGCTC 1 cut(s) 174
TaaI ACNGT 1 cut(s) 215
TaiI ACGT 1 cut(s) 253
TaqI TCGA 2 cut(s) 138, 241
TaqII GACCGA 1 cut(s) 54
TasI AATT 1 cut(s) 134
TfiI GAWTC 1 cut(s) 142
TseI GCWGC 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 37
XbaI TCTAGA 1 cut(s) 145
XspI CTAG 1 cut(s) 146
ZraI GACGTC 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.