RLG00000022620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002270
Physical Location & Seq
Reverse (-)
5442902 .. 5443437
536 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022620

Sequence Viewer

Length: 348 bp
ATGAAAGCTCTAGCGATGTTAATTTTTCAACTTCAATTGGATTCCTTTGTTGATCGCCATGTACGGCTACCAAATCCCGGAGTCCGGCAGCCTTATGGTCCAGGTCATTGTGCTCCAGTGCATTATTTGGTATACTGCTCTGTTGCTCTTCCTCTTCGAGTACCGCGACAACAAGCTGCTAATAATAGAGCAGTTCCCGGAGACCGAAACTTTCATCGTCTCCTTCAAGGTCGACGCCGGATCGACCTGAACAATCTGGAGAAATCCGATTACCGGCGAGTCGGTCCCGATACTGTAGAAGCAGATATCGACTTCGCCGCGGTGATGAAAACGAAGAGATCGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.13

Weight (kDa)

10.01

Isoelectric Point (pI)

53.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 132, 232
AccII CGCG 2 cut(s) 166, 320
AciI CCGC 3 cut(s) 164, 318, 320
AclWI GGATC 1 cut(s) 248
AcyI GRCGYC 1 cut(s) 235
AfaI GTAC 2 cut(s) 63, 162
AfiI CCNNNNNNNGG 3 cut(s) 77, 84, 273
AgsI TTSAA 3 cut(s) 29, 35, 227
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 2 cut(s) 8, 176
AluI AGCT 2 cut(s) 8, 176
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 2 cut(s) 195, 224
AlwI GGATC 1 cut(s) 248
ApeKI GCWGC 2 cut(s) 88, 176
AspS9I GGNCC 2 cut(s) 98, 284
AsuC2I CCSGG 2 cut(s) 78, 198
AsuHPI GGTGA 1 cut(s) 334
AvaII GGWCC 2 cut(s) 98, 284
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 2 cut(s) 100, 163
BceAI ACGGC 1 cut(s) 80
BciT130I CCWGG 1 cut(s) 102
BcnI CCSGG 2 cut(s) 78, 198
BcoDI GTCTC 2 cut(s) 195, 224
BfaI CTAG 1 cut(s) 11
BfmI CTRYAG 1 cut(s) 294
BisI GCNGC 3 cut(s) 89, 177, 318
BlsI GCNGC 3 cut(s) 90, 178, 319
Bme1390I CCNGG 3 cut(s) 78, 102, 198
Bme18I GGWCC 2 cut(s) 98, 284
BmgT120I GGNCC 2 cut(s) 98, 284
BmiI GGNNCC 1 cut(s) 286
BmrFI CCNGG 3 cut(s) 78, 102, 198
BpmI CTGGAG 2 cut(s) 99, 278
BpuMI CCSGG 2 cut(s) 78, 198
BsaHI GRCGYC 1 cut(s) 235
BsaI GGTCTC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 318
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 84, 273
Bse118I RCCGGY 1 cut(s) 273
Bse1I ACTGG 1 cut(s) 116
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 318
BseLI CCNNNNNNNGG 3 cut(s) 77, 84, 273
BseNI ACTGG 1 cut(s) 116
BseXI GCAGC 2 cut(s) 100, 163
Bsh1236I CGCG 2 cut(s) 166, 320
BsiHKAI GWGCWC 1 cut(s) 115
BsiSI CCGG 5 cut(s) 78, 85, 198, 238, 274
BslFI GGGAC 1 cut(s) 270
BslI CCNNNNNNNGG 3 cut(s) 77, 84, 273
BsmAI GTCTC 2 cut(s) 195, 224
BsmBI CGTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 270
Bso31I GGTCTC 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 3 cut(s) 52, 240, 338
BspACI CCGC 3 cut(s) 164, 318, 320
BspFNI CGCG 2 cut(s) 166, 320
BspLI GGNNCC 1 cut(s) 286
BspPI GGATC 1 cut(s) 248
BspQI GCTCTTC 1 cut(s) 153
BspTNI GGTCTC 1 cut(s) 195
BsrFI RCCGGY 1 cut(s) 273
BsrI ACTGG 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 273
BssECI CCNNGG 1 cut(s) 318
BssMI GATC 3 cut(s) 52, 240, 338
BssNAI GTATAC 1 cut(s) 133
BssNI GRCGYC 1 cut(s) 235
Bst1107I GTATAC 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 295
Bst6I CTCTTC 3 cut(s) 153, 159, 329
BstACI GRCGYC 1 cut(s) 235
BstDSI CCRYGG 1 cut(s) 318
BstFNI CGCG 2 cut(s) 166, 320
BstKTI GATC 3 cut(s) 55, 243, 341
BstMAI GTCTC 2 cut(s) 195, 224
BstMBI GATC 3 cut(s) 52, 240, 338
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 3 cut(s) 76, 100, 196
BstSFI CTRYAG 1 cut(s) 294
BstUI CGCG 2 cut(s) 166, 320
BstV1I GCAGC 2 cut(s) 100, 163
BstZ17I GTATAC 1 cut(s) 133
BtgI CCRYGG 1 cut(s) 318
BtgZI GCGATG 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 123
Cfr10I RCCGGY 1 cut(s) 273
Cfr13I GGNCC 2 cut(s) 98, 284
Cfr42I CCGCGG 1 cut(s) 321
CseI GACGC 1 cut(s) 243
Csp6I GTAC 2 cut(s) 62, 161
CviAII CATG 1 cut(s) 59
CviJI RGCY 4 cut(s) 8, 67, 91, 176
CviKI_1 RGCY 4 cut(s) 8, 67, 91, 176
CviQI GTAC 2 cut(s) 62, 161
DpnI GATC 3 cut(s) 54, 242, 340
DpnII GATC 3 cut(s) 52, 240, 338
Eam1104I CTCTTC 3 cut(s) 153, 159, 329
EarI CTCTTC 3 cut(s) 153, 159, 329
Eco31I GGTCTC 1 cut(s) 195
Eco32I GATATC 1 cut(s) 307
Eco47I GGWCC 2 cut(s) 98, 284
EcoRII CCWGG 1 cut(s) 100
EcoRV GATATC 1 cut(s) 307
Esp3I CGTCTC 1 cut(s) 224
FaeI CATG 1 cut(s) 62
FaiI YATR 3 cut(s) 60, 96, 133
FaqI GGGAC 1 cut(s) 270
FatI CATG 1 cut(s) 58
FblI GTMKAC 2 cut(s) 132, 232
Fnu4HI GCNGC 3 cut(s) 89, 177, 318
Fsp4HI GCNGC 3 cut(s) 89, 177, 318
FspBI CTAG 1 cut(s) 11
GluI GCNGC 3 cut(s) 89, 177, 318
GsuI CTGGAG 2 cut(s) 99, 278
HapII CCGG 5 cut(s) 78, 85, 198, 238, 274
HgaI GACGC 1 cut(s) 243
Hin1I GRCGYC 1 cut(s) 235
Hin1II CATG 1 cut(s) 62
HincII GTYRAC 1 cut(s) 233
HindII GTYRAC 1 cut(s) 233
HinfI GANTC 3 cut(s) 41, 81, 279
HpaII CCGG 5 cut(s) 78, 85, 198, 238, 274
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 2 cut(s) 133, 233
Hpy188I TCNGA 2 cut(s) 268, 343
Hpy188III TCNNGA 2 cut(s) 257, 287
Hpy8I GTNNAC 2 cut(s) 133, 233
Hpy99I CGWCG 1 cut(s) 237
HpyAV CCTTC 1 cut(s) 233
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4V TGCA 1 cut(s) 121
Hsp92I GRCGYC 1 cut(s) 235
Hsp92II CATG 1 cut(s) 62
KspI CCGCGG 1 cut(s) 321
Kzo9I GATC 3 cut(s) 52, 240, 338
LguI GCTCTTC 1 cut(s) 153
LmnI GCTCC 1 cut(s) 118
Lsp1109I GCAGC 2 cut(s) 100, 163
MaeI CTAG 1 cut(s) 11
MalI GATC 3 cut(s) 54, 242, 340
MboI GATC 3 cut(s) 52, 240, 338
MboII GAAGA 3 cut(s) 140, 146, 346
MfeI CAATTG 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 2 cut(s) 21, 35
MlyI GAGTC 2 cut(s) 90, 288
MnlI CCTC 1 cut(s) 162
MseI TTAA 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 320
MspI CCGG 5 cut(s) 78, 85, 198, 238, 274
MspR9I CCNGG 3 cut(s) 78, 102, 198
MunI CAATTG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 102
MvnI CGCG 2 cut(s) 166, 320
NciI CCSGG 2 cut(s) 78, 198
NdeII GATC 3 cut(s) 52, 240, 338
NlaIII CATG 1 cut(s) 62
NlaIV GGNNCC 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 153
PcsI WCGNNNNNNNCGW 1 cut(s) 163
PfeI GAWTC 1 cut(s) 41
PfoI TCCNGGA 2 cut(s) 76, 196
PkrI GCNGC 3 cut(s) 90, 178, 319
PleI GAGTC 2 cut(s) 89, 287
PpsI GAGTC 2 cut(s) 89, 287
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 286
PspPI GGNCC 2 cut(s) 98, 284
RsaI GTAC 2 cut(s) 63, 162
RsaNI GTAC 2 cut(s) 62, 161
SacII CCGCGG 1 cut(s) 321
SalI GTCGAC 1 cut(s) 231
SapI GCTCTTC 1 cut(s) 153
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 3 cut(s) 89, 177, 318
Sau3AI GATC 3 cut(s) 52, 240, 338
Sau96I GGNCC 2 cut(s) 98, 284
SchI GAGTC 2 cut(s) 90, 288
ScrFI CCNGG 3 cut(s) 78, 102, 198
SduI GDGCHC 1 cut(s) 115
SetI ASST 5 cut(s) 10, 106, 178, 232, 249
SfcI CTRYAG 1 cut(s) 294
Sfr303I CCGCGG 1 cut(s) 321
SgrBI CCGCGG 1 cut(s) 321
SinI GGWCC 2 cut(s) 98, 284
Sse9I AATT 2 cut(s) 21, 35
SsiI CCGC 3 cut(s) 164, 318, 320
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 3 cut(s) 76, 100, 196
TaaI ACNGT 1 cut(s) 295
TaqI TCGA 4 cut(s) 157, 232, 243, 309
TaqII GACCGA 2 cut(s) 219, 272
TasI AATT 2 cut(s) 21, 35
TauI GCSGC 1 cut(s) 320
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TscAI CASTG 1 cut(s) 123
TseI GCWGC 2 cut(s) 88, 176
TspDTI ATGAA 3 cut(s) 17, 203, 341
TspRI CASTG 1 cut(s) 123
VpaK11BI GGWCC 2 cut(s) 98, 284
XmiI GTMKAC 2 cut(s) 132, 232
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.