Rh7BG152600

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002270
Physical Location & Seq
Forward (+)
11293816 .. 11306954
13139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG152600.1

Sequence Viewer

Length: 1473 bp
ATGGCCGAGGACGGCAGTTCAATAGCTGCAGAGTTGGACCGAGCGGCAGAGGGATTGTCATCCAGAGAAGCGGAGCTGCTGAGGCAAGAGATTGAGCAACACAAGCACGAAAAGGCGGTGCTGGAGGAGAAGCACCAATTCGAGATTCTAGAGAGGCTGAAAGTGAAGGACGAGCTTCACGAGTATGTGGCGGGGGACAAGGAGGTAATTTCCAAGCTGGAGAGCCGCATTTCGCGGCTGGAGGAGGGAATTTCCGGGAAATTGAGCAAGGAGAGGCGCCGCCTGGGATCGAGGAGGAGCCAGCGGCTGGCGAATATCGAAGCTGATCAAAATAGAGAGCATGAGTCTGATGAAGATGAGGTTGATTCTGATGGAAATGGGAGCACGGCGAGTGAAGGAGACTCTTCTCCGCCTCCTCCTCCTCCTCCACGTAGAGGTAGAGGTCGGCCGCGTACTAAAACAAATGAAAATCTGCAAATGTCAGGTAATAAAAAGCAGATGAAAAAGATAGGGAGGATAAAGAGTGTGAGGAAACACAAGTATAGAGCCCCAGATCATGTACAATACCGTTGTAATATGCTGGCATTCCTTAAAATAATGCAGAAAGTAAGAGAACGCTTGACTAAAAGCCACTTGGAGATGCTACAGCAAACTCCGTTTTGGCCATTGATATCGGCATTTTACAATGGTATGATTTCTGAAAATGACTGCAAGAAATCGGAGAGTGACATCAACGACATTATCCAATGCTACAACTCAAACTCAAAGTGTTTTGAGTTTGGTAGCAGATCTGCATGTTTAACGCCAGAGGACATCTCCGTGATTTTGGGGCTGCCACAAGAAGGTGAAACACTAAGGGTGACAGGGCTGTTTGGAGTCAACAGATACACGTCGGATTTTGTCGAAAGATATTTCAAGGATGAAAAGAGAGTTAAGAAAACATTGGTAGATGATGGTTTGGAGAAAGCGTTACAAGGGAAAAGAGAAACTGATAGAGAAGATGTTGTACGCCTTATTATACTAGAGTTATTCATCACATTCTTATTCTGCAACGCGGGTAGTACTATTGGATGGAAATTAGTCAGGTGCTGTGAAGAGTTAGAAAACATGTCAAGATATTCATGGGCAAAAGCAGTTGCCGACTTTCTAAGCAGCACATTGGAGAAAACGTCCGGGCAGTACGGGCCATATTCTACTGGCGGATGTGTGGTTGTCCTATTGTTTTGGTTGTGTGAGAGAAGTAATCTTATACAACCAGTTGAAGGAAGGGAGACAATTACACCAGCCCTAATAAAATGGAATATCCAGGAGTTACATTTGAAACTGCAACGAATGAAGGACTTTGAAGAACTTGGGGTTGGGCTAAAAGGAGAAGCCATGAATCTCGGTTCCCCAACTTCCACCTCTATCTGCAGTGAATTGGAGGAGGGTGTTTATAGGGACACAAAATCAACAGCCACTGACTTGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

490

Amino Acids

55.72

Weight (kDa)

6.25

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 231 - 437 2.2e-09 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 276
AccB7I CCANNNNNTGG 1 cut(s) 307
AccBSI CCGCTC 1 cut(s) 44
AccII CGCG 3 cut(s) 235, 451, 1055
AclWI GGATC 1 cut(s) 295
AcoI YGGCCR 3 cut(s) 3, 446, 662
AcsI RAATTY 1 cut(s) 249
AcyI GRCGYC 1 cut(s) 277
AfaI GTAC 5 cut(s) 454, 561, 1008, 1063, 1181
AfiI CCNNNNNNNGG 4 cut(s) 307, 434, 842, 1262
AflIII ACRYGT 2 cut(s) 888, 1107
AgsI TTSAA 5 cut(s) 21, 916, 1262, 1321, 1346
AjiI CACGTC 1 cut(s) 891
AjnI CCWGG 2 cut(s) 282, 1305
AjuI GAANNNNNNNTTGG 4 cut(s) 129, 161, 1341, 1373
AluBI AGCT 5 cut(s) 26, 76, 175, 217, 323
AluI AGCT 5 cut(s) 26, 76, 175, 217, 323
Alw21I GWGCWC 1 cut(s) 386
Alw26I GTCTC 2 cut(s) 393, 1265
AlwI GGATC 1 cut(s) 295
AlwNI CAGNNNCTG 3 cut(s) 307, 1089, 1460
AoxI GGCC 4 cut(s) 3, 446, 662, 1184
ApeKI GCWGC 4 cut(s) 26, 76, 832, 1152
ApoI RAATTY 1 cut(s) 249
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 2 cut(s) 37, 1184
AsuC2I CCSGG 2 cut(s) 256, 1174
AsuHPI GGTGA 2 cut(s) 857, 871
AvaII GGWCC 1 cut(s) 37
BalI TGGCCA 1 cut(s) 664
BanI GGYRCC 1 cut(s) 276
BanII GRGCYC 1 cut(s) 550
BarI GAAGNNNNNNTAC 2 cut(s) 990, 1022
BauI CACGAG 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 386
BbvCI CCTCAGC 1 cut(s) 80
BbvI GCAGC 4 cut(s) 13, 63, 819, 1164
BccI CCATC 3 cut(s) 365, 947, 1065
BceAI ACGGC 2 cut(s) 28, 402
BciT130I CCWGG 2 cut(s) 284, 1307
BclI TGATCA 1 cut(s) 325
BcnI CCSGG 2 cut(s) 256, 1174
BcoDI GTCTC 2 cut(s) 393, 1265
BfaI CTAG 2 cut(s) 149, 1022
BfmI CTRYAG 3 cut(s) 27, 644, 1411
BfoI RGCGCY 1 cut(s) 280
BglII AGATCT 1 cut(s) 788
BmcAI AGTACT 1 cut(s) 1063
Bme1390I CCNGG 4 cut(s) 256, 284, 1174, 1307
Bme18I GGWCC 1 cut(s) 37
BmgBI CACGTC 1 cut(s) 891
BmgT120I GGNCC 2 cut(s) 37, 1184
BmiI GGNNCC 3 cut(s) 278, 299, 1390
BmrFI CCNGG 4 cut(s) 256, 284, 1174, 1307
BmsI GCATC 1 cut(s) 630
BplI GAGNNNNNCTC 2 cut(s) 800, 832
BpmI CTGGAG 3 cut(s) 143, 239, 260
Bpu10I CCTNAGC 1 cut(s) 80
BpuMI CCSGG 2 cut(s) 256, 1174
BsaAI YACGTR 1 cut(s) 431
BsaBI GATNNNNATC 1 cut(s) 58
BsaHI GRCGYC 1 cut(s) 277
BsaJI CCNNGG 2 cut(s) 6, 283
BsaXI ACNNNNNCTCC 4 cut(s) 953, 983, 1154, 1184
Bsc4I CCNNNNNNNGG 4 cut(s) 307, 434, 842, 1262
Bse1I ACTGG 2 cut(s) 1201, 1256
Bse8I GATNNNNATC 1 cut(s) 58
BseBI CCWGG 2 cut(s) 284, 1307
BseDI CCNNGG 2 cut(s) 6, 283
BseGI GGATG 4 cut(s) 59, 925, 1076, 1208
BseJI GATNNNNATC 1 cut(s) 58
BseLI CCNNNNNNNGG 4 cut(s) 307, 434, 842, 1262
BseMII CTCAG 1 cut(s) 71
BseNI ACTGG 2 cut(s) 1201, 1256
BseRI GAGGAG 9 cut(s) 140, 257, 307, 310, 405, 408, 411, 414, 1439
BseX3I CGGCCG 1 cut(s) 446
BseXI GCAGC 4 cut(s) 13, 63, 819, 1164
Bsh1236I CGCG 3 cut(s) 235, 451, 1055
Bsh1285I CGRYCG 1 cut(s) 449
BshFI GGCC 4 cut(s) 5, 448, 664, 1186
BshNI GGYRCC 1 cut(s) 276
BsiEI CGRYCG 1 cut(s) 449
BsiHKAI GWGCWC 1 cut(s) 386
BsiSI CCGG 2 cut(s) 255, 1173
BslFI GGGAC 2 cut(s) 209, 1454
BslI CCNNNNNNNGG 4 cut(s) 307, 434, 842, 1262
BsmAI GTCTC 2 cut(s) 393, 1265
BsmFI GGGAC 2 cut(s) 209, 1454
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 4 cut(s) 5, 448, 664, 1186
Bsp1286I GDGCHC 2 cut(s) 386, 550
Bsp1407I TGTACA 1 cut(s) 559
Bsp143I GATC 4 cut(s) 287, 325, 553, 788
BspANI GGCC 4 cut(s) 5, 448, 664, 1186
BspCNI CTCAG 1 cut(s) 72
BspFNI CGCG 3 cut(s) 235, 451, 1055
BspLI GGNNCC 3 cut(s) 278, 299, 1390
BspMAI CTGCAG 2 cut(s) 31, 1415
BspPI GGATC 1 cut(s) 295
BspT107I GGYRCC 1 cut(s) 276
BsrBI CCGCTC 1 cut(s) 44
BsrGI TGTACA 1 cut(s) 559
BsrI ACTGG 2 cut(s) 1201, 1256
BssECI CCNNGG 2 cut(s) 6, 283
BssMI GATC 4 cut(s) 287, 325, 553, 788
BssNI GRCGYC 1 cut(s) 277
BssSI CACGAG 1 cut(s) 179
Bst2BI CACGAG 1 cut(s) 179
Bst2UI CCWGG 2 cut(s) 284, 1307
Bst4CI ACNGT 1 cut(s) 569
Bst6I CTCTTC 2 cut(s) 409, 1089
BstACI GRCGYC 1 cut(s) 277
BstAUI TGTACA 1 cut(s) 559
BstBAI YACGTR 1 cut(s) 431
BstC8I GCNNGC 3 cut(s) 302, 309, 582
BstDEI CTNAG 3 cut(s) 80, 854, 1148
BstF5I GGATG 4 cut(s) 59, 925, 1076, 1208
BstFNI CGCG 3 cut(s) 235, 451, 1055
BstH2I RGCGCY 1 cut(s) 280
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 4 cut(s) 290, 328, 556, 791
BstMAI GTCTC 2 cut(s) 393, 1265
BstMBI GATC 4 cut(s) 287, 325, 553, 788
BstMCI CGRYCG 1 cut(s) 449
BstMWI GCNNNNNNNGC 3 cut(s) 82, 103, 1183
BstNI CCWGG 2 cut(s) 284, 1307
BstNSI RCATGY 2 cut(s) 798, 1111
BstSCI CCNGG 4 cut(s) 254, 282, 1172, 1305
BstSFI CTRYAG 3 cut(s) 27, 644, 1411
BstUI CGCG 3 cut(s) 235, 451, 1055
BstV1I GCAGC 4 cut(s) 13, 63, 819, 1164
BstX2I RGATCY 1 cut(s) 788
BstXI CCANNNNNNTGG 1 cut(s) 1465
BstYI RGATCY 1 cut(s) 788
BstZI CGGCCG 1 cut(s) 446
BsuRI GGCC 4 cut(s) 5, 448, 664, 1186
BtrI CACGTC 1 cut(s) 891
BtsCI GGATG 4 cut(s) 59, 925, 1076, 1208
BtsI GCAGTG 1 cut(s) 1420
BtsIMutI CAGTG 2 cut(s) 1420, 1458
Cac8I GCNNGC 3 cut(s) 302, 309, 582
CaiI CAGNNNCTG 3 cut(s) 307, 1089, 1460
CfoI GCGC 1 cut(s) 279
Cfr13I GGNCC 2 cut(s) 37, 1184
Csp6I GTAC 5 cut(s) 453, 560, 1007, 1062, 1180
CviAII CATG 6 cut(s) 341, 557, 795, 1108, 1122, 1378
CviQI GTAC 5 cut(s) 453, 560, 1007, 1062, 1180
DdeI CTNAG 3 cut(s) 80, 854, 1148
DinI GGCGCC 1 cut(s) 278
DpnI GATC 4 cut(s) 289, 327, 555, 790
DpnII GATC 4 cut(s) 287, 325, 553, 788
EaeI YGGCCR 3 cut(s) 3, 446, 662
EagI CGGCCG 1 cut(s) 446
Eam1104I CTCTTC 2 cut(s) 409, 1089
EarI CTCTTC 2 cut(s) 409, 1089
EciI GGCGGA 2 cut(s) 399, 1215
EclXI CGGCCG 1 cut(s) 446
Eco24I GRGCYC 1 cut(s) 550
Eco32I GATATC 1 cut(s) 672
Eco47I GGWCC 1 cut(s) 37
Eco52I CGGCCG 1 cut(s) 446
EcoRII CCWGG 2 cut(s) 282, 1305
EcoRV GATATC 1 cut(s) 672
EcoT38I GRGCYC 1 cut(s) 550
EgeI GGCGCC 1 cut(s) 278
EheI GGCGCC 1 cut(s) 278
FaeI CATG 6 cut(s) 344, 560, 798, 1111, 1125, 1381
FaqI GGGAC 2 cut(s) 209, 1454
FatI CATG 6 cut(s) 340, 556, 794, 1107, 1121, 1377
FauI CCCGC 2 cut(s) 184, 1048
FbaI TGATCA 1 cut(s) 325
FokI GGATG 4 cut(s) 46, 932, 1083, 1215
FriOI GRGCYC 1 cut(s) 550
FspBI CTAG 2 cut(s) 149, 1022
GlaI GCGC 1 cut(s) 278
GsuI CTGGAG 3 cut(s) 143, 239, 260
HaeII RGCGCY 1 cut(s) 280
HaeIII GGCC 4 cut(s) 5, 448, 664, 1186
HapII CCGG 2 cut(s) 255, 1173
HhaI GCGC 1 cut(s) 279
Hin1I GRCGYC 1 cut(s) 277
Hin1II CATG 6 cut(s) 344, 560, 798, 1111, 1125, 1381
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HincII GTYRAC 1 cut(s) 880
HindII GTYRAC 1 cut(s) 880
HinfI GANTC 6 cut(s) 145, 344, 365, 401, 876, 1381
HpaII CCGG 2 cut(s) 255, 1173
HphI GGTGA 2 cut(s) 857, 871
Hpy166II GTNNAC 1 cut(s) 880
Hpy188I TCNGA 5 cut(s) 349, 370, 700, 721, 895
Hpy188III TCNNGA 5 cut(s) 63, 142, 149, 179, 1113
Hpy8I GTNNAC 1 cut(s) 880
Hpy99I CGWCG 1 cut(s) 895
HpyAV CCTTC 6 cut(s) 160, 389, 836, 1256, 1260, 1330
HpyCH4III ACNGT 1 cut(s) 569
HpyCH4IV ACGT 3 cut(s) 430, 890, 1169
HpyCH4V TGCA 8 cut(s) 29, 475, 601, 711, 794, 1050, 1327, 1413
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 103, 1183
HpyF3I CTNAG 3 cut(s) 80, 854, 1148
HpySE526I ACGT 3 cut(s) 430, 890, 1169
Hsp92I GRCGYC 1 cut(s) 277
Hsp92II CATG 6 cut(s) 344, 560, 798, 1111, 1125, 1381
HspAI GCGC 1 cut(s) 277
KasI GGCGCC 1 cut(s) 276
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 4 cut(s) 287, 325, 553, 788
LmnI GCTCC 3 cut(s) 73, 297, 381
Lsp1109I GCAGC 4 cut(s) 13, 63, 819, 1164
LweI GCATC 1 cut(s) 630
MaeI CTAG 2 cut(s) 149, 1022
MaeII ACGT 3 cut(s) 430, 890, 1169
MaeIII GTNAC 4 cut(s) 725, 859, 969, 1311
MalI GATC 4 cut(s) 289, 327, 555, 790
MbiI CCGCTC 1 cut(s) 44
MboI GATC 4 cut(s) 287, 325, 553, 788
MboII GAAGA 5 cut(s) 365, 396, 1010, 1106, 1358
MflI RGATCY 1 cut(s) 788
MhlI GDGCHC 2 cut(s) 386, 550
MlsI TGGCCA 1 cut(s) 664
MluCI AATT 7 cut(s) 137, 207, 249, 260, 1076, 1275, 1418
MluNI TGGCCA 1 cut(s) 664
Mly113I GGCGCC 1 cut(s) 277
MlyI GAGTC 3 cut(s) 353, 395, 885
MmeI TCCRAC 2 cut(s) 15, 873
Mox20I TGGCCA 1 cut(s) 664
MscI TGGCCA 1 cut(s) 664
MseI TTAA 3 cut(s) 591, 800, 933
MslI CAYNNNNRTG 2 cut(s) 183, 818
Msp20I TGGCCA 1 cut(s) 664
MspA1I CMGCKG 1 cut(s) 304
MspI CCGG 2 cut(s) 255, 1173
MspR9I CCNGG 4 cut(s) 256, 284, 1174, 1307
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 2 cut(s) 284, 1307
MvnI CGCG 3 cut(s) 235, 451, 1055
MwoI GCNNNNNNNGC 3 cut(s) 82, 103, 1183
NarI GGCGCC 1 cut(s) 277
NciI CCSGG 2 cut(s) 256, 1174
NdeII GATC 4 cut(s) 287, 325, 553, 788
NlaIII CATG 6 cut(s) 344, 560, 798, 1111, 1125, 1381
NlaIV GGNNCC 3 cut(s) 278, 299, 1390
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 2 cut(s) 725, 859
NspI RCATGY 2 cut(s) 798, 1111
PciI ACATGT 1 cut(s) 1107
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PctI GAATGC 1 cut(s) 584
PfeI GAWTC 3 cut(s) 145, 365, 1381
PflMI CCANNNNNTGG 1 cut(s) 307
PfoI TCCNGGA 2 cut(s) 254, 1305
PleI GAGTC 3 cut(s) 352, 395, 884
PluTI GGCGCC 1 cut(s) 280
PpsI GAGTC 3 cut(s) 352, 395, 884
Ppu21I YACGTR 1 cut(s) 431
PscI ACATGT 1 cut(s) 1107
Psp6I CCWGG 2 cut(s) 282, 1305
PspGI CCWGG 2 cut(s) 282, 1305
PspN4I GGNNCC 3 cut(s) 278, 299, 1390
PspPI GGNCC 2 cut(s) 37, 1184
PstI CTGCAG 2 cut(s) 31, 1415
PstNI CAGNNNCTG 3 cut(s) 307, 1089, 1460
PsuI RGATCY 1 cut(s) 788
RsaI GTAC 5 cut(s) 454, 561, 1008, 1063, 1181
RsaNI GTAC 5 cut(s) 453, 560, 1007, 1062, 1180
RseI CAYNNNNRTG 2 cut(s) 183, 818
SaqAI TTAA 3 cut(s) 591, 800, 933
Sau3AI GATC 4 cut(s) 287, 325, 553, 788
Sau96I GGNCC 2 cut(s) 37, 1184
ScaI AGTACT 1 cut(s) 1063
SchI GAGTC 3 cut(s) 353, 395, 885
ScrFI CCNGG 4 cut(s) 256, 284, 1174, 1307
SduI GDGCHC 2 cut(s) 386, 550
SfaNI GCATC 1 cut(s) 630
SfcI CTRYAG 3 cut(s) 27, 644, 1411
SfoI GGCGCC 1 cut(s) 278
SinI GGWCC 1 cut(s) 37
SmiMI CAYNNNNRTG 2 cut(s) 183, 818
Sse9I AATT 7 cut(s) 137, 207, 249, 260, 1076, 1275, 1418
SspDI GGCGCC 1 cut(s) 276
SspMI CTAG 2 cut(s) 149, 1022
StyD4I CCNGG 4 cut(s) 254, 282, 1172, 1305
TaaI ACNGT 1 cut(s) 569
TaiI ACGT 3 cut(s) 433, 893, 1172
TaqI TCGA 4 cut(s) 141, 290, 318, 903
TaqII GACCGA 1 cut(s) 54
TasI AATT 7 cut(s) 137, 207, 249, 260, 1076, 1275, 1418
TatI WGTACW 2 cut(s) 559, 1061
TauI GCSGC 6 cut(s) 47, 228, 238, 282, 307, 451
TfiI GAWTC 3 cut(s) 145, 365, 1381
Tru1I TTAA 3 cut(s) 591, 800, 933
Tru9I TTAA 3 cut(s) 591, 800, 933
TscAI CASTG 2 cut(s) 1420, 1465
TseFI GTSAC 2 cut(s) 725, 859
TseI GCWGC 4 cut(s) 26, 76, 832, 1152
Tsp45I GTSAC 2 cut(s) 725, 859
TspDTI ATGAA 8 cut(s) 366, 480, 515, 936, 1021, 1110, 1349, 1394
TspGWI ACGGA 2 cut(s) 645, 808
TspRI CASTG 2 cut(s) 1420, 1465
Van91I CCANNNNNTGG 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 1 cut(s) 249
XbaI TCTAGA 1 cut(s) 148
XceI RCATGY 2 cut(s) 798, 1111
XspI CTAG 2 cut(s) 149, 1022
ZrmI AGTACT 1 cut(s) 1063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.