RLG00000002439

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002270
Physical Location & Seq
Forward (+)
34215634 .. 34216402
769 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002439

Sequence Viewer

Length: 366 bp
ATGGCCAAGGATGGCAGTTCAATAGTTGCAGAGTTAGACCGAGGGGCAAAGGGATTGTCATCCAGAGAAGCGGAGCTGAGGCAAGAGATTGAGCAACACAAGCACGAAAAGGCGGTGCTGGAGGAGAAGCACCAATTCGAGATTCTAGAGAGGCTGAAGGTGAAGGACGAGCTCCGGAGCCAAGCTGCTAATAATGGAGCAGTTCCCGGAGACCGCCTCCTCCATCGTCTCCTTCAAGGTCGACTCCGACGTCATGTTCCTCGACGGCCGCGACTTCCTCAAAACCAACGCCGAGATCGGCGAAGACGACAAGCTCCACGTCAAGGGAAACTTACTAAATTGGCAAAAGTTGCATCAAAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

122

Amino Acids

14.03

Weight (kDa)

11.33

Isoelectric Point (pI)

74.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 249
AatII GACGTC 1 cut(s) 253
AccI GTMKAC 1 cut(s) 241
AccII CGCG 1 cut(s) 271
AccIII TCCGGA 1 cut(s) 174
AciI CCGC 4 cut(s) 71, 113, 214, 269
AcoI YGGCCR 2 cut(s) 3, 266
AcuI CTGAAG 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 250
AfiI CCNNNNNNNGG 1 cut(s) 323
AgsI TTSAA 2 cut(s) 21, 236
AjiI CACGTC 1 cut(s) 320
AjuI GAANNNNNNNTTGG 2 cut(s) 126, 158
AluBI AGCT 4 cut(s) 76, 172, 185, 314
AluI AGCT 4 cut(s) 76, 172, 185, 314
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 2 cut(s) 204, 233
Aor13HI TCCGGA 1 cut(s) 174
AoxI GGCC 2 cut(s) 3, 266
ApeKI GCWGC 1 cut(s) 185
ArsI GACNNNNNNTTYG 2 cut(s) 41, 73
AsuC2I CCSGG 1 cut(s) 207
AsuHPI GGTGA 1 cut(s) 172
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 310
Bbv12I GWGCWC 1 cut(s) 174
BbvCI CCTCAGC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 172
BccI CCATC 2 cut(s) 5, 231
BceAI ACGGC 1 cut(s) 281
BcnI CCSGG 1 cut(s) 207
BcoDI GTCTC 2 cut(s) 204, 233
BfaI CTAG 1 cut(s) 146
BisI GCNGC 2 cut(s) 186, 269
BlsI GCNGC 2 cut(s) 187, 270
Bme1390I CCNGG 1 cut(s) 207
BmgBI CACGTC 1 cut(s) 320
BmiI GGNNCC 1 cut(s) 179
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 362
BpiI GAAGAC 1 cut(s) 310
BplI GAGNNNNNCTC 2 cut(s) 201, 233
BpmI CTGGAG 1 cut(s) 140
Bpu10I CCTNAGC 1 cut(s) 77
BpuMI CCSGG 1 cut(s) 207
BsaBI GATNNNNATC 1 cut(s) 58
BsaHI GRCGYC 1 cut(s) 250
BsaI GGTCTC 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 6, 40
BsaWI WCCGGW 1 cut(s) 174
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse8I GATNNNNATC 1 cut(s) 58
BseAI TCCGGA 1 cut(s) 174
BseDI CCNNGG 2 cut(s) 6, 40
BseGI GGATG 2 cut(s) 16, 59
BseJI GATNNNNATC 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMII CTCAG 1 cut(s) 68
BseRI GAGGAG 2 cut(s) 137, 209
BseX3I CGGCCG 1 cut(s) 266
BseXI GCAGC 1 cut(s) 172
Bsh1236I CGCG 1 cut(s) 271
Bsh1285I CGRYCG 1 cut(s) 269
BshFI GGCC 2 cut(s) 5, 268
BsiEI CGRYCG 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 174
BsiSI CCGG 2 cut(s) 175, 207
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 2 cut(s) 204, 233
BsmBI CGTCTC 1 cut(s) 233
BsnI GGCC 2 cut(s) 5, 268
Bso31I GGTCTC 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 174
Bsp13I TCCGGA 1 cut(s) 174
Bsp143I GATC 1 cut(s) 295
BspACI CCGC 4 cut(s) 71, 113, 214, 269
BspANI GGCC 2 cut(s) 5, 268
BspCNI CTCAG 1 cut(s) 69
BspEI TCCGGA 1 cut(s) 174
BspFNI CGCG 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 179
BspTNI GGTCTC 1 cut(s) 204
BssECI CCNNGG 2 cut(s) 6, 40
BssMI GATC 1 cut(s) 295
BssNI GRCGYC 1 cut(s) 250
BssT1I CCWWGG 1 cut(s) 6
BstACI GRCGYC 1 cut(s) 250
BstAPI GCANNNNNTGC 1 cut(s) 350
BstDEI CTNAG 1 cut(s) 77
BstF5I GGATG 2 cut(s) 16, 59
BstFNI CGCG 1 cut(s) 271
BstKTI GATC 1 cut(s) 298
BstMAI GTCTC 2 cut(s) 204, 233
BstMBI GATC 1 cut(s) 295
BstMCI CGRYCG 1 cut(s) 269
BstMWI GCNNNNNNNGC 2 cut(s) 100, 350
BstSCI CCNGG 1 cut(s) 205
BstUI CGCG 1 cut(s) 271
BstV1I GCAGC 1 cut(s) 172
BstV2I GAAGAC 1 cut(s) 310
BstZI CGGCCG 1 cut(s) 266
BsuRI GGCC 2 cut(s) 5, 268
BtrI CACGTC 1 cut(s) 320
BtsCI GGATG 2 cut(s) 16, 59
CviAII CATG 1 cut(s) 254
CviJI RGCY 8 cut(s) 5, 76, 154, 172, 180, 185, 268, 314
CviKI_1 RGCY 8 cut(s) 5, 76, 154, 172, 180, 185, 268, 314
DdeI CTNAG 1 cut(s) 77
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
DrdI GACNNNNNNGTC 1 cut(s) 249
DseDI GACNNNNNNGTC 1 cut(s) 249
EaeI YGGCCR 2 cut(s) 3, 266
EagI CGGCCG 1 cut(s) 266
Ecl136II GAGCTC 1 cut(s) 172
EclXI CGGCCG 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 174
Eco31I GGTCTC 1 cut(s) 204
Eco52I CGGCCG 1 cut(s) 266
Eco53kI GAGCTC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 233
FaeI CATG 1 cut(s) 257
FaiI YATR 1 cut(s) 255
FalI AAGNNNNNCTT 2 cut(s) 315, 347
FatI CATG 1 cut(s) 253
FblI GTMKAC 1 cut(s) 241
Fnu4HI GCNGC 2 cut(s) 186, 269
FokI GGATG 2 cut(s) 23, 46
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 2 cut(s) 186, 269
FspBI CTAG 1 cut(s) 146
GluI GCNGC 2 cut(s) 186, 269
GsuI CTGGAG 1 cut(s) 140
HaeIII GGCC 2 cut(s) 5, 268
HapII CCGG 2 cut(s) 175, 207
Hin1I GRCGYC 1 cut(s) 250
Hin1II CATG 1 cut(s) 257
HincII GTYRAC 1 cut(s) 242
HindII GTYRAC 1 cut(s) 242
HinfI GANTC 2 cut(s) 142, 243
HpaII CCGG 2 cut(s) 175, 207
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 4 cut(s) 63, 139, 146, 175
Hpy8I GTNNAC 1 cut(s) 242
Hpy99I CGWCG 2 cut(s) 252, 267
HpyAV CCTTC 3 cut(s) 151, 157, 242
HpyCH4IV ACGT 2 cut(s) 250, 319
HpyCH4V TGCA 2 cut(s) 29, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 100, 350
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 2 cut(s) 250, 319
Hsp92I GRCGYC 1 cut(s) 250
Hsp92II CATG 1 cut(s) 257
Kpn2I TCCGGA 1 cut(s) 174
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 5 cut(s) 73, 177, 177, 197, 319
LpnPI CCDG 4 cut(s) 76, 104, 188, 220
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 1 cut(s) 362
MaeI CTAG 1 cut(s) 146
MaeII ACGT 2 cut(s) 250, 319
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 1 cut(s) 315
MhlI GDGCHC 1 cut(s) 174
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 134, 338
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 237
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 8 cut(s) 35, 72, 115, 144, 227, 230, 270, 288
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 174
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 175, 207
MspR9I CCNGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 271
MwoI GCNNNNNNNGC 2 cut(s) 100, 350
NciI CCSGG 1 cut(s) 207
NdeII GATC 1 cut(s) 295
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 179
NmeAIII GCCGAG 1 cut(s) 317
PcsI WCGNNNNNNNCGW 3 cut(s) 247, 268, 304
PfeI GAWTC 1 cut(s) 142
PfoI TCCNGGA 1 cut(s) 205
PkrI GCNGC 2 cut(s) 187, 270
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
Psp124BI GAGCTC 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 179
SacI GAGCTC 1 cut(s) 174
SalI GTCGAC 1 cut(s) 240
SatI GCNGC 2 cut(s) 186, 269
Sau3AI GATC 1 cut(s) 295
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 1 cut(s) 174
SetI ASST 8 cut(s) 78, 162, 174, 187, 241, 253, 316, 322
SfaNI GCATC 1 cut(s) 362
Sse9I AATT 2 cut(s) 134, 338
SsiI CCGC 4 cut(s) 71, 113, 214, 269
SspMI CTAG 1 cut(s) 146
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 1 cut(s) 6
TaiI ACGT 2 cut(s) 253, 322
TaqI TCGA 3 cut(s) 138, 241, 262
TaqII GACCGA 1 cut(s) 54
TasI AATT 2 cut(s) 134, 338
TauI GCSGC 1 cut(s) 271
TfiI GAWTC 1 cut(s) 142
TseI GCWGC 1 cut(s) 185
XbaI TCTAGA 1 cut(s) 145
XmiI GTMKAC 1 cut(s) 241
XspI CTAG 1 cut(s) 146
ZraI GACGTC 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.