Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002270

Physical Location & Seq

Genomic Coordinates Reverse (-)

70677144 .. 70677765

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG488700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCCGAGGACGGCAGTTCAATAGTTGCAGATTTGGACCGAGCGGCAGAGGGATTGTCATCCAGAGAAACGGAGCTAAGGCAAGAGATTGAGCAACACAAGCACGAAAAGGCGGTGCCGGAGGAGAAGCACCGATTCGAGATTCTAGAGAGGCTGAGGGTGAAGGACGAGCCCCGGAGCCAAGCTGCTGATAATGGAGCAGTTCCTGGAGACCATTCCCTCCATCGTCTCCTTCATGGTCGAGTCCGACGTCATGTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 PMD

Protein Analysis

87

Amino Acids

9.93

Weight (kDa)

6.15

Isoelectric Point (pI)

69.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g04060
malus_domestica	MD06G1101600.v1.1 MD06G1101700.v1.1 MD06G1101900.v1.1 MD14G1121200.v1.1
prunus_persica	Prupe.5G115000_v2.0.a1 Prupe.5G115000_v2.0.a1 Prupe.5G115000_v2.0.a1
pyrus_communis	pycom06g09680
rosa_chinensis	RchiOBHm_Chr5g0001951 RchiOBHm_Chr7g0195461
rosa_laevigata	RLG00000002439 RLG00000004119 RLG00000022620 RLG00000028643 RLG00000028651 RLG00000032833 RLG00000033240
rosa_multiflora	Rmu_sc0000317.1_g000011 Rmu_sc0018163.1_g000004
rosa_roxburghii	Rroxscaffold_2G00094000 Rroxscaffold_3G00260460 Rroxscaffold_5G00357160
rosa_rugosa	Rorug02G0433400 Rorug07G0023400
rosa_samantha	Rh2AG537600 Rh2BG632300 Rh2DG488700 Rh2DG645100 Rh3BG060600 Rh3CG059400 Rh6AG052600 Rh6AG097200 Rh6CG084100 Rh6CG182500 Rh6DG080300 Rh6DG173900 Rh7AG150900 Rh7BG152600 Rh7CG156100 Rh7CG185200 Rh7DG151900
rosa_wichuraiana	Rw7G012880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	253
AccB1I	GGYRCC	1 cut(s)	115
AccBSI	CCGCTC	1 cut(s)	44
AciI	CCGC	2 cut(s)	44, 113
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	250
AgsI	TTSAA	1 cut(s)	21
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	2 cut(s)	76, 185
AluI	AGCT	2 cut(s)	76, 185
Alw26I	GTCTC	2 cut(s)	204, 233
AlwNI	CAGNNNCTG	1 cut(s)	206
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	37
AsuC2I	CCSGG	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	174
BbvCI	CCTCAGC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	231
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	175
BcoDI	GTCTC	2 cut(s)	204, 233
BfaI	CTAG	1 cut(s)	146
BisI	GCNGC	2 cut(s)	45, 186
BlsI	GCNGC	2 cut(s)	46, 187
Bme1390I	CCNGG	2 cut(s)	175, 207
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	117, 179
BmrFI	CCNGG	2 cut(s)	175, 207
BpmI	CTGGAG	1 cut(s)	228
Bpu10I	CCTNAGC	2 cut(s)	77, 155
BpuMI	CCSGG	1 cut(s)	175
BsaBI	GATNNNNATC	1 cut(s)	58
BsaHI	GRCGYC	1 cut(s)	250
BsaI	GGTCTC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	6, 173
Bse8I	GATNNNNATC	1 cut(s)	58
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	6, 173
BseGI	GGATG	1 cut(s)	59
BseJI	GATNNNNATC	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	146
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	172
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	115
BsiSI	CCGG	2 cut(s)	119, 175
BsmAI	GTCTC	2 cut(s)	204, 233
BsmBI	CGTCTC	1 cut(s)	233
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	174
BspACI	CCGC	2 cut(s)	44, 113
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	117, 179
BspT107I	GGYRCC	1 cut(s)	115
BspTNI	GGTCTC	1 cut(s)	204
BsrBI	CCGCTC	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	6, 173
BssNI	GRCGYC	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	207
BstACI	GRCGYC	1 cut(s)	250
BstDEI	CTNAG	2 cut(s)	77, 155
BstF5I	GGATG	1 cut(s)	59
BstMAI	GTCTC	2 cut(s)	204, 233
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	173, 205
BstV1I	GCAGC	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	59
CaiI	CAGNNNCTG	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	37
CviAII	CATG	2 cut(s)	236, 254
CviJI	RGCY	6 cut(s)	5, 76, 154, 172, 180, 185
CviKI_1	RGCY	6 cut(s)	5, 76, 154, 172, 180, 185
DdeI	CTNAG	2 cut(s)	77, 155
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	205
EcoT38I	GRGCYC	1 cut(s)	174
Esp3I	CGTCTC	1 cut(s)	233
FaeI	CATG	2 cut(s)	239, 257
FaiI	YATR	2 cut(s)	237, 255
FatI	CATG	2 cut(s)	235, 253
Fnu4HI	GCNGC	2 cut(s)	45, 186
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	2 cut(s)	45, 186
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	2 cut(s)	45, 186
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	119, 175
Hin1I	GRCGYC	1 cut(s)	250
Hin1II	CATG	2 cut(s)	239, 257
HinfI	GANTC	3 cut(s)	135, 142, 243
HpaII	CCGG	2 cut(s)	119, 175
HphI	GGTGA	1 cut(s)	172
Hpy188I	TCNGA	1 cut(s)	248
Hpy188III	TCNNGA	3 cut(s)	63, 139, 146
Hpy99I	CGWCG	1 cut(s)	252
HpyAV	CCTTC	2 cut(s)	157, 242
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	2 cut(s)	77, 155
HpySE526I	ACGT	1 cut(s)	250
Hsp92I	GRCGYC	1 cut(s)	250
Hsp92II	CATG	2 cut(s)	239, 257
LmnI	GCTCC	3 cut(s)	73, 177, 197
LpnPI	CCDG	5 cut(s)	76, 132, 188, 192, 219
Lsp1109I	GCAGC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	1 cut(s)	250
MbiI	CCGCTC	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	252
MnlI	CCTC	5 cut(s)	43, 115, 144, 150, 230
MspI	CCGG	2 cut(s)	119, 175
MspR9I	CCNGG	2 cut(s)	175, 207
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	100
NciI	CCSGG	1 cut(s)	175
NlaIII	CATG	2 cut(s)	239, 257
NlaIV	GGNNCC	2 cut(s)	117, 179
NmeAIII	GCCGAG	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	1 cut(s)	247
PfeI	GAWTC	2 cut(s)	135, 142
PfoI	TCCNGGA	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	46, 187
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	2 cut(s)	117, 179
PspPI	GGNCC	1 cut(s)	37
PstNI	CAGNNNCTG	1 cut(s)	206
SatI	GCNGC	2 cut(s)	45, 186
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	252
ScrFI	CCNGG	2 cut(s)	175, 207
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	3 cut(s)	78, 187, 253
SinI	GGWCC	1 cut(s)	37
SsiI	CCGC	2 cut(s)	44, 113
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	2 cut(s)	173, 205
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	2 cut(s)	138, 241
TaqII	GACCGA	1 cut(s)	54
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	2 cut(s)	135, 142
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	1 cut(s)	224
TspGWI	ACGGA	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	37
XbaI	TCTAGA	1 cut(s)	145
XspI	CTAG	1 cut(s)	146
ZraI	GACGTC	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.