RLG00000032833

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002270
Physical Location & Seq
Forward (+)
19587310 .. 19591190
3881 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032833

Sequence Viewer

Length: 525 bp
ATGAAAAACATGACAAGTTCATCGCAAATGATAATGGATTCATATGCCAATGATGCGGACGTCTTAAGAGCAAATAAGAGATACGAGAGATGGAAACAATTGGAGGTTTTGATTATTGACAATACTTTCCATCGGGATTATGGAGAATTCAATGAAGCTGGCAGACTAGAGTGGAGCTCTAGCATATTGCAGATTGACCATTGCAGTGTATCACAGGATTCCTTTGTTGATCGCCATGTACGACTACCAAATCCCGGAGTCCGGCAGCCTTATGGTCCAGGTCATCGTGCTCCAGTGCATAATTTGGCATACTGCTCTGTTGCTCTTCCTCTTCGAGTACTACGACGGCAAGCTGCTAATAATGGAGCAGTTCCTGGAGACCGCAACCTTCATCGTCTCCTTCAAGGTCGACGCCGAATCGACTTGAACGATCTGGAGCAATTCGATTACCGGCGAGTCGGTCCCGATATTGTAGAAGCAGATATCGACTTCGCCGCGGTGATGAAAACGAAGAGATCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

20.05

Weight (kDa)

8.62

Isoelectric Point (pI)

59.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 63
AccI GTMKAC 1 cut(s) 409
AccII CGCG 1 cut(s) 497
AciI CCGC 4 cut(s) 56, 382, 495, 497
AcsI RAATTY 1 cut(s) 146
AcyI GRCGYC 2 cut(s) 60, 412
AfaI GTAC 2 cut(s) 240, 339
AfiI CCNNNNNNNGG 2 cut(s) 254, 261
AflII CTTAAG 1 cut(s) 64
AgsI TTSAA 3 cut(s) 151, 404, 427
AjnI CCWGG 2 cut(s) 277, 373
AluBI AGCT 3 cut(s) 158, 177, 353
AluI AGCT 3 cut(s) 158, 177, 353
Alw21I GWGCWC 2 cut(s) 179, 292
Alw26I GTCTC 2 cut(s) 372, 401
AlwNI CAGNNNCTG 1 cut(s) 374
ApeKI GCWGC 2 cut(s) 265, 353
ApoI RAATTY 1 cut(s) 146
AspS9I GGNCC 2 cut(s) 275, 461
AsuC2I CCSGG 1 cut(s) 255
AsuHPI GGTGA 1 cut(s) 511
AvaII GGWCC 2 cut(s) 275, 461
BanII GRGCYC 1 cut(s) 179
Bbv12I GWGCWC 2 cut(s) 179, 292
BbvI GCAGC 2 cut(s) 277, 340
BccI CCATC 2 cut(s) 84, 138
BceAI ACGGC 1 cut(s) 362
BciT130I CCWGG 2 cut(s) 279, 375
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 2 cut(s) 372, 401
BfaI CTAG 2 cut(s) 167, 180
BfrI CTTAAG 1 cut(s) 64
BisI GCNGC 3 cut(s) 266, 354, 495
BlsI GCNGC 3 cut(s) 267, 355, 496
BmcAI AGTACT 1 cut(s) 339
Bme1390I CCNGG 3 cut(s) 255, 279, 375
Bme18I GGWCC 2 cut(s) 275, 461
BmgT120I GGNCC 2 cut(s) 275, 461
BmiI GGNNCC 1 cut(s) 463
BmrFI CCNGG 3 cut(s) 255, 279, 375
BmsI GCATC 1 cut(s) 43
BplI GAGNNNNNCTC 2 cut(s) 161, 193
BpmI CTGGAG 3 cut(s) 276, 396, 455
BpuMI CCSGG 1 cut(s) 255
BsaHI GRCGYC 2 cut(s) 60, 412
BsaI GGTCTC 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 495
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 261
Bse118I RCCGGY 1 cut(s) 450
Bse1I ACTGG 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 199
BseBI CCWGG 2 cut(s) 279, 375
BseDI CCNNGG 1 cut(s) 495
BseLI CCNNNNNNNGG 2 cut(s) 254, 261
BseMI GCAATG 1 cut(s) 199
BseNI ACTGG 1 cut(s) 293
BseXI GCAGC 2 cut(s) 277, 340
Bsh1236I CGCG 1 cut(s) 497
BsiHKAI GWGCWC 2 cut(s) 179, 292
BsiSI CCGG 3 cut(s) 255, 262, 451
BslFI GGGAC 1 cut(s) 447
BslI CCNNNNNNNGG 2 cut(s) 254, 261
BsmAI GTCTC 2 cut(s) 372, 401
BsmBI CGTCTC 1 cut(s) 401
BsmFI GGGAC 1 cut(s) 447
Bso31I GGTCTC 1 cut(s) 372
Bsp1286I GDGCHC 2 cut(s) 179, 292
Bsp143I GATC 3 cut(s) 229, 430, 515
BspACI CCGC 4 cut(s) 56, 382, 495, 497
BspFNI CGCG 1 cut(s) 497
BspLI GGNNCC 1 cut(s) 463
BspQI GCTCTTC 1 cut(s) 330
BspTI CTTAAG 1 cut(s) 64
BspTNI GGTCTC 1 cut(s) 372
BsrDI GCAATG 1 cut(s) 199
BsrFI RCCGGY 1 cut(s) 450
BsrI ACTGG 1 cut(s) 293
BssAI RCCGGY 1 cut(s) 450
BssECI CCNNGG 1 cut(s) 495
BssMI GATC 3 cut(s) 229, 430, 515
BssNI GRCGYC 2 cut(s) 60, 412
Bst2UI CCWGG 2 cut(s) 279, 375
Bst6I CTCTTC 3 cut(s) 330, 336, 506
BstACI GRCGYC 2 cut(s) 60, 412
BstAFI CTTAAG 1 cut(s) 64
BstC8I GCNNGC 2 cut(s) 160, 351
BstDSI CCRYGG 1 cut(s) 495
BstFNI CGCG 1 cut(s) 497
BstKTI GATC 3 cut(s) 232, 433, 518
BstMAI GTCTC 2 cut(s) 372, 401
BstMBI GATC 3 cut(s) 229, 430, 515
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 2 cut(s) 279, 375
BstSCI CCNGG 3 cut(s) 253, 277, 373
BstUI CGCG 1 cut(s) 497
BstV1I GCAGC 2 cut(s) 277, 340
BtgI CCRYGG 1 cut(s) 495
BtgZI GCGATG 1 cut(s) 6
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 2 cut(s) 211, 300
Cac8I GCNNGC 2 cut(s) 160, 351
CaiI CAGNNNCTG 1 cut(s) 374
Cfr10I RCCGGY 1 cut(s) 450
Cfr13I GGNCC 2 cut(s) 275, 461
Cfr42I CCGCGG 1 cut(s) 498
CseI GACGC 1 cut(s) 420
Csp6I GTAC 2 cut(s) 239, 338
CviAII CATG 2 cut(s) 10, 236
CviJI RGCY 4 cut(s) 158, 177, 268, 353
CviKI_1 RGCY 4 cut(s) 158, 177, 268, 353
CviQI GTAC 2 cut(s) 239, 338
DpnI GATC 3 cut(s) 231, 432, 517
DpnII GATC 3 cut(s) 229, 430, 515
Eam1104I CTCTTC 3 cut(s) 330, 336, 506
EarI CTCTTC 3 cut(s) 330, 336, 506
Ecl136II GAGCTC 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 179
Eco31I GGTCTC 1 cut(s) 372
Eco32I GATATC 1 cut(s) 484
Eco47I GGWCC 2 cut(s) 275, 461
Eco53kI GAGCTC 1 cut(s) 177
EcoICRI GAGCTC 1 cut(s) 177
EcoRI GAATTC 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 277, 373
EcoRV GATATC 1 cut(s) 484
EcoT38I GRGCYC 1 cut(s) 179
Esp3I CGTCTC 1 cut(s) 401
FaeI CATG 2 cut(s) 13, 239
FaiI YATR 9 cut(s) 11, 43, 45, 141, 185, 237, 273, 300, 310
FaqI GGGAC 1 cut(s) 447
FatI CATG 2 cut(s) 9, 235
FauNDI CATATG 1 cut(s) 43
FblI GTMKAC 1 cut(s) 409
Fnu4HI GCNGC 3 cut(s) 266, 354, 495
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 3 cut(s) 266, 354, 495
FspBI CTAG 2 cut(s) 167, 180
GluI GCNGC 3 cut(s) 266, 354, 495
GsuI CTGGAG 3 cut(s) 276, 396, 455
HapII CCGG 3 cut(s) 255, 262, 451
HgaI GACGC 1 cut(s) 420
Hin1I GRCGYC 2 cut(s) 60, 412
Hin1II CATG 2 cut(s) 13, 239
HincII GTYRAC 1 cut(s) 410
HindII GTYRAC 1 cut(s) 410
HinfI GANTC 5 cut(s) 38, 218, 258, 417, 456
HpaII CCGG 3 cut(s) 255, 262, 451
HphI GGTGA 1 cut(s) 511
Hpy166II GTNNAC 1 cut(s) 410
Hpy188I TCNGA 1 cut(s) 520
Hpy188III TCNNGA 3 cut(s) 134, 434, 464
Hpy8I GTNNAC 1 cut(s) 410
Hpy99I CGWCG 2 cut(s) 348, 414
HpyAV CCTTC 2 cut(s) 398, 410
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 3 cut(s) 190, 204, 298
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpySE526I ACGT 1 cut(s) 60
Hsp92I GRCGYC 2 cut(s) 60, 412
Hsp92II CATG 2 cut(s) 13, 239
KspI CCGCGG 1 cut(s) 498
Kzo9I GATC 3 cut(s) 229, 430, 515
LguI GCTCTTC 1 cut(s) 330
LmnI GCTCC 4 cut(s) 174, 295, 365, 436
Lsp1109I GCAGC 2 cut(s) 277, 340
LweI GCATC 1 cut(s) 43
MaeI CTAG 2 cut(s) 167, 180
MaeII ACGT 1 cut(s) 60
MalI GATC 3 cut(s) 231, 432, 517
MboI GATC 3 cut(s) 229, 430, 515
MboII GAAGA 3 cut(s) 317, 323, 523
MfeI CAATTG 1 cut(s) 98
MhlI GDGCHC 2 cut(s) 179, 292
MluCI AATT 4 cut(s) 98, 146, 301, 440
MlyI GAGTC 2 cut(s) 267, 465
MnlI CCTC 2 cut(s) 97, 339
MseI TTAA 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 497
MspCI CTTAAG 1 cut(s) 64
MspI CCGG 3 cut(s) 255, 262, 451
MspR9I CCNGG 3 cut(s) 255, 279, 375
MunI CAATTG 1 cut(s) 98
MvaI CCWGG 2 cut(s) 279, 375
MvnI CGCG 1 cut(s) 497
MwoI GCNNNNNNNGC 1 cut(s) 53
NciI CCSGG 1 cut(s) 255
NdeI CATATG 1 cut(s) 43
NdeII GATC 3 cut(s) 229, 430, 515
NlaIII CATG 2 cut(s) 13, 239
NlaIV GGNNCC 1 cut(s) 463
PciSI GCTCTTC 1 cut(s) 330
PcsI WCGNNNNNNNCGW 3 cut(s) 238, 340, 426
PfeI GAWTC 3 cut(s) 38, 218, 417
PfoI TCCNGGA 2 cut(s) 253, 373
PkrI GCNGC 3 cut(s) 267, 355, 496
PleI GAGTC 2 cut(s) 266, 464
PpsI GAGTC 2 cut(s) 266, 464
Psp124BI GAGCTC 1 cut(s) 179
Psp6I CCWGG 2 cut(s) 277, 373
PspGI CCWGG 2 cut(s) 277, 373
PspN4I GGNNCC 1 cut(s) 463
PspPI GGNCC 2 cut(s) 275, 461
PstNI CAGNNNCTG 1 cut(s) 374
RsaI GTAC 2 cut(s) 240, 339
RsaNI GTAC 2 cut(s) 239, 338
RseI CAYNNNNRTG 1 cut(s) 204
SacI GAGCTC 1 cut(s) 179
SacII CCGCGG 1 cut(s) 498
SalI GTCGAC 1 cut(s) 408
SapI GCTCTTC 1 cut(s) 330
SaqAI TTAA 1 cut(s) 65
SatI GCNGC 3 cut(s) 266, 354, 495
Sau3AI GATC 3 cut(s) 229, 430, 515
Sau96I GGNCC 2 cut(s) 275, 461
ScaI AGTACT 1 cut(s) 339
SchI GAGTC 2 cut(s) 267, 465
ScrFI CCNGG 3 cut(s) 255, 279, 375
SduI GDGCHC 2 cut(s) 179, 292
SetI ASST 8 cut(s) 63, 108, 160, 179, 283, 355, 390, 409
SfaNI GCATC 1 cut(s) 43
Sfr303I CCGCGG 1 cut(s) 498
SgrBI CCGCGG 1 cut(s) 498
SinI GGWCC 2 cut(s) 275, 461
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
Sse9I AATT 4 cut(s) 98, 146, 301, 440
SsiI CCGC 4 cut(s) 56, 382, 495, 497
SspMI CTAG 2 cut(s) 167, 180
SstI GAGCTC 1 cut(s) 179
StyD4I CCNGG 3 cut(s) 253, 277, 373
TaiI ACGT 1 cut(s) 63
TaqI TCGA 5 cut(s) 334, 409, 420, 444, 486
TaqII GACCGA 1 cut(s) 449
TasI AATT 4 cut(s) 98, 146, 301, 440
TatI WGTACW 1 cut(s) 337
TauI GCSGC 1 cut(s) 497
TfiI GAWTC 3 cut(s) 38, 218, 417
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TscAI CASTG 2 cut(s) 211, 300
TseI GCWGC 2 cut(s) 265, 353
TspDTI ATGAA 6 cut(s) 9, 17, 30, 168, 380, 518
TspRI CASTG 2 cut(s) 211, 300
Vha464I CTTAAG 1 cut(s) 64
VpaK11BI GGWCC 2 cut(s) 275, 461
XapI RAATTY 1 cut(s) 146
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 409
XspI CTAG 2 cut(s) 167, 180
ZraI GACGTC 1 cut(s) 61
ZrmI AGTACT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.