Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002739

Physical Location & Seq

Genomic Coordinates Forward (+)

9282356 .. 9287192

Gene Structure 4837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1088800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGGGTCCCTACATTCAAAGATGTGGCGAAGCATGTCTTGGACAAGTCACTTTATTCGTATGGATTTTGGCACACAGCTTCTCTTCTTCTGTCTCCATCATCATCCATAAAGTTGAGCACAGAAGGGCATGGTGAGAAAAAAAGACGCCCCAACAAATTGATGCTCTTTCATAAGGCACGCATTTACTTTCCTGTTTTGACCTTTAATCAAATTGTTTGTGAAGCTAGTTTGAGGGATAATTTGTTTACTGATTGGAGTTTCAGTTTCCTTGATATGTCATCACTTGTCTTCGAATCTGGATTGAGGTACCGCATTGGTGTACATAAAAACAGTGGTCATCCCCAGGCAGTTAATTCCATAGATGATGAGGCACCTACTTCTCTAATGCCTGGATTCTGCACAAAGGCTGCCTTTTCTTATGAAAAAGGCCAATATCTTTGGAGGCAAAATGAGACACGAAAAGACATCATGATACAGAAAGAAAAAGGTTGGTTTTGGCGGCCATCTTATGATGTGCGTCTTAAAGAACCTCATTCTTCAGTATTTGGAATTTTTTGTGGAAGCTGCACTGCCTGGTTTCAGGATGGATACAACCCAGTGGCAGTTGATATAAGGGGAGACGAGGGCAATTCTAGGAGCAATAAGAAGAGAAGTCCATTCCGTGCTGATTTTTTTGGCTCTCTCTGCTATACTTTGCAGCACGGAAAATTTAGAGAGCTCTACGGTGATCTGACCAGGATTGATGCTCGCCTGGATATTTGTTCAGCTTCAGCTTTGGCTAAAAGGGTGATTAATGGTTTGAAGAGTTCCTCTGCTAATAGTTCAAAAGATCCGATGTCCTCCCCTAGGGGTCAATCTAATCTTTCAGCAGCAGATTCCAGGGTTGCACTTGACTGTTTGCGCGGGAAACATGCCCCTCATATTGAGGATTTCATATACAGCTTGAGCTACTCCTTGAGACTTTTACGATCAGGGAAGGTCGTTGCTTGGTATTCCCCAAAAAGAAAAGAAGGGATGATTGAGTTACGCTTGTTTGAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3769

Protein Analysis

349

Amino Acids

39.57

Weight (kDa)

9.47

Isoelectric Point (pI)

51.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44640
fragaria_vesca	FvH4_7g08780 FvH4_7g08780 FvH4_7g08780 FvH4_7g08800
malus_domestica	MD02G1224900.v1.1 MD07G1088800.v1.1 MD07G1089000.v1.1 MD07G1089100.v1.1 MD07G1089700.v1.1 MD07G1089800.v1.1 MD07G1089900.v1.1 MD07G1090600.v1.1
prunus_persica	Prupe.2G115700_v2.0.a1 Prupe.2G115700_v2.0.a1
pyrus_communis	pycom02g17920 pycom02g17930 pycom02g19310 pycom07g07130
rosa_chinensis	RchiOBHm_Chr1g0344071
rosa_laevigata	RLG00000028928
rosa_multiflora	Rmu_sc0000251.1_g000013 Rmu_sc0000251.1_g000017 Rmu_sc0002276.1_g000004 Rmu_sc0002276.1_g000007 Rmu_sc0002297.1_g000007 Rmu_sc0002297.1_g000013 Rmu_ssc0000434.1_g000008
rosa_roxburghii	Rroxscaffold_4G00310080
rosa_rugosa	Rorug01G0171400 Rorug01G0171500 Rorug05G0553700 Rorug05G0553800
rosa_samantha	Rh1AG188100 Rh1BG154200 Rh1CG173600 Rh1DG186300 Rh5BG101000
rosa_wichuraiana	Rw1G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	309
AccB1I	GGYRCC	2 cut(s)	309, 373
AccII	CGCG	1 cut(s)	906
AciI	CCGC	3 cut(s)	313, 502, 906
AclWI	GGATC	1 cut(s)	827
AcoI	YGGCCR	1 cut(s)	503
AcsI	RAATTY	2 cut(s)	552, 710
AcuI	CTGAAG	2 cut(s)	525, 756
AcyI	GRCGYC	1 cut(s)	148
AfaI	GTAC	2 cut(s)	311, 324
AfiI	CCNNNNNNNGG	1 cut(s)	849
AgsI	TTSAA	3 cut(s)	19, 805, 828
AjnI	CCWGG	6 cut(s)	345, 391, 575, 737, 753, 881
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AluBI	AGCT	8 cut(s)	80, 227, 567, 721, 770, 776, 945, 951
AluI	AGCT	8 cut(s)	80, 227, 567, 721, 770, 776, 945, 951
Alw21I	GWGCWC	2 cut(s)	122, 723
Alw26I	GTCTC	4 cut(s)	99, 449, 615, 955
AlwI	GGATC	1 cut(s)	827
AoxI	GGCC	2 cut(s)	430, 503
ApeKI	GCWGC	4 cut(s)	410, 567, 700, 872
ApoI	RAATTY	2 cut(s)	552, 710
AseI	ATTAAT	1 cut(s)	795
Asp718I	GGTACC	1 cut(s)	309
AspA2I	CCTAGG	1 cut(s)	848
AspLEI	GCGC	1 cut(s)	906
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	3 cut(s)	146, 740, 802
AsuII	TTCGAA	1 cut(s)	294
AvaII	GGWCC	1 cut(s)	7
AvrII	CCTAGG	1 cut(s)	848
BanI	GGYRCC	2 cut(s)	309, 373
BanII	GRGCYC	1 cut(s)	723
BbsI	GAAGAC	1 cut(s)	283
Bbv12I	GWGCWC	2 cut(s)	122, 723
BbvI	GCAGC	4 cut(s)	397, 554, 712, 884
BccI	CCATC	3 cut(s)	106, 514, 581
BciT130I	CCWGG	6 cut(s)	347, 393, 577, 739, 755, 883
BciVI	GTATCC	1 cut(s)	584
BcoDI	GTCTC	4 cut(s)	99, 449, 615, 955
BfaI	CTAG	3 cut(s)	228, 636, 849
BfuI	GTATCC	1 cut(s)	584
BisI	GCNGC	5 cut(s)	411, 503, 568, 701, 873
BlnI	CCTAGG	1 cut(s)	848
BlsI	GCNGC	5 cut(s)	412, 504, 569, 702, 874
Bme1390I	CCNGG	6 cut(s)	347, 393, 577, 739, 755, 883
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	4 cut(s)	8, 9, 311, 375
BmrFI	CCNGG	6 cut(s)	347, 393, 577, 739, 755, 883
BmrI	ACTGGG	1 cut(s)	593
BmsI	GCATC	2 cut(s)	153, 736
BmuI	ACTGGG	1 cut(s)	593
BpiI	GAAGAC	1 cut(s)	283
Bpu14I	TTCGAA	1 cut(s)	294
BpuEI	CTTGAG	2 cut(s)	967, 979
BsaHI	GRCGYC	1 cut(s)	148
BsaJI	CCNNGG	3 cut(s)	345, 848, 882
BsaXI	ACNNNNNCTCC	2 cut(s)	250, 280
Bsc4I	CCNNNNNNNGG	1 cut(s)	849
Bse1I	ACTGG	1 cut(s)	599
BseBI	CCWGG	6 cut(s)	347, 393, 577, 739, 755, 883
BseDI	CCNNGG	3 cut(s)	345, 848, 882
BseGI	GGATG	4 cut(s)	104, 340, 592, 1023
BseLI	CCNNNNNNNGG	1 cut(s)	849
BseNI	ACTGG	1 cut(s)	599
BseXI	GCAGC	4 cut(s)	397, 554, 712, 884
BsgI	GTGCAG	2 cut(s)	385, 553
Bsh1236I	CGCG	1 cut(s)	906
BshFI	GGCC	2 cut(s)	432, 505
BshNI	GGYRCC	2 cut(s)	309, 373
BsiHKAI	GWGCWC	2 cut(s)	122, 723
BslI	CCNNNNNNNGG	1 cut(s)	849
BsmAI	GTCTC	4 cut(s)	99, 449, 615, 955
BsmBI	CGTCTC	1 cut(s)	615
BsnI	GGCC	2 cut(s)	432, 505
Bsp119I	TTCGAA	1 cut(s)	294
Bsp1286I	GDGCHC	2 cut(s)	122, 723
Bsp1407I	TGTACA	1 cut(s)	322
Bsp143I	GATC	3 cut(s)	730, 832, 971
BspACI	CCGC	3 cut(s)	313, 502, 906
BspANI	GGCC	2 cut(s)	432, 505
BspFNI	CGCG	1 cut(s)	906
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	4 cut(s)	8, 9, 311, 375
BspPI	GGATC	1 cut(s)	827
BspT104I	TTCGAA	1 cut(s)	294
BspT107I	GGYRCC	2 cut(s)	309, 373
BsrGI	TGTACA	1 cut(s)	322
BsrI	ACTGG	1 cut(s)	599
BssECI	CCNNGG	3 cut(s)	345, 848, 882
BssMI	GATC	3 cut(s)	730, 832, 971
BssNI	GRCGYC	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	848
Bst2UI	CCWGG	6 cut(s)	347, 393, 577, 739, 755, 883
Bst4CI	ACNGT	3 cut(s)	335, 728, 899
Bst6I	CTCTTC	3 cut(s)	90, 644, 800
BstACI	GRCGYC	1 cut(s)	148
BstAUI	TGTACA	1 cut(s)	322
BstBI	TTCGAA	1 cut(s)	294
BstC8I	GCNNGC	2 cut(s)	181, 751
BstENI	CCTNNNNNAGG	1 cut(s)	847
BstF5I	GGATG	4 cut(s)	104, 340, 592, 1023
BstFNI	CGCG	1 cut(s)	906
BstHHI	GCGC	1 cut(s)	906
BstKTI	GATC	3 cut(s)	733, 835, 974
BstMAI	GTCTC	4 cut(s)	99, 449, 615, 955
BstMBI	GATC	3 cut(s)	730, 832, 971
BstMWI	GCNNNNNNNGC	1 cut(s)	687
BstNI	CCWGG	6 cut(s)	347, 393, 577, 739, 755, 883
BstNSI	RCATGY	2 cut(s)	38, 917
BstSCI	CCNGG	6 cut(s)	345, 391, 575, 737, 753, 881
BstUI	CGCG	1 cut(s)	906
BstV1I	GCAGC	4 cut(s)	397, 554, 712, 884
BstV2I	GAAGAC	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	832
BstYI	RGATCY	1 cut(s)	832
BsuI	GTATCC	1 cut(s)	584
BsuRI	GGCC	2 cut(s)	432, 505
BtsCI	GGATG	4 cut(s)	104, 340, 592, 1023
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	3 cut(s)	340, 570, 606
Cac8I	GCNNGC	2 cut(s)	181, 751
CciI	TCATGA	1 cut(s)	471
CfoI	GCGC	1 cut(s)	906
Cfr13I	GGNCC	1 cut(s)	7
CseI	GACGC	2 cut(s)	156, 509
Csp6I	GTAC	2 cut(s)	310, 323
CviAII	CATG	4 cut(s)	35, 131, 472, 914
CviQI	GTAC	2 cut(s)	310, 323
DpnI	GATC	3 cut(s)	732, 834, 973
DpnII	GATC	3 cut(s)	730, 832, 971
EaeI	YGGCCR	1 cut(s)	503
Eam1104I	CTCTTC	3 cut(s)	90, 644, 800
EarI	CTCTTC	3 cut(s)	90, 644, 800
Ecl136II	GAGCTC	1 cut(s)	721
Eco130I	CCWWGG	1 cut(s)	848
Eco24I	GRGCYC	1 cut(s)	723
Eco47I	GGWCC	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	721
Eco57I	CTGAAG	2 cut(s)	525, 756
EcoICRI	GAGCTC	1 cut(s)	721
EcoNI	CCTNNNNNAGG	1 cut(s)	847
EcoO109I	RGGNCCY	1 cut(s)	7
EcoRII	CCWGG	6 cut(s)	345, 391, 575, 737, 753, 881
EcoT14I	CCWWGG	1 cut(s)	848
EcoT38I	GRGCYC	1 cut(s)	723
ErhI	CCWWGG	1 cut(s)	848
Esp3I	CGTCTC	1 cut(s)	615
FaeI	CATG	4 cut(s)	38, 134, 475, 917
FalI	AAGNNNNNCTT	4 cut(s)	23, 55, 398, 430
FatI	CATG	4 cut(s)	34, 130, 471, 913
FauI	CCCGC	1 cut(s)	899
Fnu4HI	GCNGC	5 cut(s)	411, 503, 568, 701, 873
FokI	GGATG	4 cut(s)	91, 327, 599, 1030
FriOI	GRGCYC	1 cut(s)	723
Fsp4HI	GCNGC	5 cut(s)	411, 503, 568, 701, 873
FspBI	CTAG	3 cut(s)	228, 636, 849
GlaI	GCGC	1 cut(s)	905
GluI	GCNGC	5 cut(s)	411, 503, 568, 701, 873
HaeIII	GGCC	2 cut(s)	432, 505
HgaI	GACGC	2 cut(s)	156, 509
HhaI	GCGC	1 cut(s)	906
Hin1I	GRCGYC	1 cut(s)	148
Hin1II	CATG	4 cut(s)	38, 134, 475, 917
Hin6I	GCGC	1 cut(s)	904
HinP1I	GCGC	1 cut(s)	904
HinfI	GANTC	3 cut(s)	296, 396, 878
HphI	GGTGA	3 cut(s)	146, 740, 802
Hpy166II	GTNNAC	2 cut(s)	249, 323
Hpy188I	TCNGA	2 cut(s)	735, 837
Hpy188III	TCNNGA	3 cut(s)	300, 472, 584
Hpy8I	GTNNAC	2 cut(s)	249, 323
HpyAV	CCTTC	3 cut(s)	119, 973, 1007
HpyCH4III	ACNGT	3 cut(s)	335, 728, 899
HpyCH4V	TGCA	4 cut(s)	402, 570, 700, 890
HpyF10VI	GCNNNNNNNGC	1 cut(s)	687
Hsp92I	GRCGYC	1 cut(s)	148
Hsp92II	CATG	4 cut(s)	38, 134, 475, 917
HspAI	GCGC	1 cut(s)	904
KflI	GGGWCCC	1 cut(s)	7
KpnI	GGTACC	1 cut(s)	313
Kzo9I	GATC	3 cut(s)	730, 832, 971
LmnI	GCTCC	1 cut(s)	639
Lsp1109I	GCAGC	4 cut(s)	397, 554, 712, 884
LweI	GCATC	2 cut(s)	153, 736
MaeI	CTAG	3 cut(s)	228, 636, 849
MaeIII	GTNAC	2 cut(s)	48, 1026
MalI	GATC	3 cut(s)	732, 834, 973
MboI	GATC	3 cut(s)	730, 832, 971
MboII	GAAGA	6 cut(s)	77, 80, 283, 531, 661, 817
MflI	RGATCY	1 cut(s)	832
MhlI	GDGCHC	2 cut(s)	122, 723
MluCI	AATT	7 cut(s)	158, 213, 241, 355, 552, 631, 710
MseI	TTAA	5 cut(s)	207, 354, 525, 795, 1045
MspR9I	CCNGG	6 cut(s)	347, 393, 577, 739, 755, 883
MvaI	CCWGG	6 cut(s)	347, 393, 577, 739, 755, 883
MvnI	CGCG	1 cut(s)	906
MwoI	GCNNNNNNNGC	1 cut(s)	687
NdeII	GATC	3 cut(s)	730, 832, 971
NlaIII	CATG	4 cut(s)	38, 134, 475, 917
NlaIV	GGNNCC	4 cut(s)	8, 9, 311, 375
NmuCI	GTSAC	1 cut(s)	48
NspI	RCATGY	2 cut(s)	38, 917
NspV	TTCGAA	1 cut(s)	294
PagI	TCATGA	1 cut(s)	471
PfeI	GAWTC	3 cut(s)	296, 396, 878
PkrI	GCNGC	5 cut(s)	412, 504, 569, 702, 874
PpuMI	RGGWCCY	1 cut(s)	7
PshBI	ATTAAT	1 cut(s)	795
Psp124BI	GAGCTC	1 cut(s)	723
Psp5II	RGGWCCY	1 cut(s)	7
Psp6I	CCWGG	6 cut(s)	345, 391, 575, 737, 753, 881
PspGI	CCWGG	6 cut(s)	345, 391, 575, 737, 753, 881
PspN4I	GGNNCC	4 cut(s)	8, 9, 311, 375
PspPI	GGNCC	1 cut(s)	7
PspPPI	RGGWCCY	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	832
RsaI	GTAC	2 cut(s)	311, 324
RsaNI	GTAC	2 cut(s)	310, 323
SacI	GAGCTC	1 cut(s)	723
SaqAI	TTAA	5 cut(s)	207, 354, 525, 795, 1045
SatI	GCNGC	5 cut(s)	411, 503, 568, 701, 873
Sau3AI	GATC	3 cut(s)	730, 832, 971
Sau96I	GGNCC	1 cut(s)	7
ScrFI	CCNGG	6 cut(s)	347, 393, 577, 739, 755, 883
SduI	GDGCHC	2 cut(s)	122, 723
SfaNI	GCATC	2 cut(s)	153, 736
SfuI	TTCGAA	1 cut(s)	294
SinI	GGWCC	1 cut(s)	7
SmlI	CTYRAG	2 cut(s)	946, 958
SmoI	CTYRAG	2 cut(s)	946, 958
Sse9I	AATT	7 cut(s)	158, 213, 241, 355, 552, 631, 710
SsiI	CCGC	3 cut(s)	313, 502, 906
SspMI	CTAG	3 cut(s)	228, 636, 849
SstI	GAGCTC	1 cut(s)	723
StyD4I	CCNGG	6 cut(s)	345, 391, 575, 737, 753, 881
StyI	CCWWGG	1 cut(s)	848
TaaI	ACNGT	3 cut(s)	335, 728, 899
TaqI	TCGA	1 cut(s)	294
TasI	AATT	7 cut(s)	158, 213, 241, 355, 552, 631, 710
TatI	WGTACW	1 cut(s)	322
TauI	GCSGC	1 cut(s)	505
TfiI	GAWTC	3 cut(s)	296, 396, 878
Tru1I	TTAA	5 cut(s)	207, 354, 525, 795, 1045
Tru9I	TTAA	5 cut(s)	207, 354, 525, 795, 1045
TscAI	CASTG	3 cut(s)	340, 577, 606
TseFI	GTSAC	1 cut(s)	48
TseI	GCWGC	4 cut(s)	410, 567, 700, 872
Tsp45I	GTSAC	1 cut(s)	48
TspDTI	ATGAA	3 cut(s)	161, 438, 925
TspGWI	ACGGA	2 cut(s)	653, 720
TspRI	CASTG	3 cut(s)	340, 577, 606
VpaK11BI	GGWCC	1 cut(s)	7
VspI	ATTAAT	1 cut(s)	795
XagI	CCTNNNNNAGG	1 cut(s)	847
XapI	RAATTY	2 cut(s)	552, 710
XceI	RCATGY	2 cut(s)	38, 917
XmaJI	CCTAGG	1 cut(s)	848
XspI	CTAG	3 cut(s)	228, 636, 849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.