Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002739

Physical Location & Seq

Genomic Coordinates Forward (+)

6467580 .. 6471242

Gene Structure 3663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g07130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCGAACCTGAGGACGGCAATGGACTCAGCCTTCTGGGACTTGGACGTTTCTTCGCCTCAGACCCTTGAGGTATCCGCCAAGGCCGTTCCCGGCGACCCATTTCCTCTCGACTGTGCTCGAGCCAGCCGAGCCCTTAGGATTCAGCAACTCTCTCTTCTGGGAAATGGGTTCCCCTTGGGTGTTATACCTTCCTACCCCCCCACTTCTAACAGGGACTTGGGTTCTTTCTCTCTCCAGTCCCTCTTGCTCAGACCAGCTACCTCTAAACTGCTTCCTTACCATGATATTACACTTGAGGCTGCATGGCCTGAACTGTTCGTTGACCATAAGGGAAAATACTGGGATGTGCCTGAGTCAATTTCCTTAGATATGTCATCACTTGTCTCCAAATCTGGATTGCGGTACCACATTGGTGTACATAAAAACAGTGGTCATCCCCAGGCAGTTAATTCCATAGATGATGAGGCACCTCCTTCTCTAATGCCTGGATTCTGCGCAAAGGCTGCCTTTTCTTATGAAAAAAGCCAAGATCTTTGGAGTCAAAATGAGACACGAAAAGACATCATGATACAGAAAGAAAAGGGTTTGTTTTGGCGGCCATCTTATGATGTGCGTCTTAAAGAACCTCATGCTGCAGTATATGGAGTTTTTGGTGGAGGCTGCACTGCCTGGTTTCAGGATGGGTACAACCCAGTGGCAGTTGATATGAGCCGAGACGAGGGCAATTCTTGGAGCAGTAAGAAGAGAAGTCCATTCAGTATTGATTTTTTCGGCTCTCTCTGCTATACTTTCCAGCACGGAAAATTTGGAGAGCTCTACGGTGATCTGACCTGGATTGATGCTCGCCTGGATATTTGTTCAGCGTCAGGTTTGGCTAAAAGGGTGATAATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3769

Protein Analysis

300

Amino Acids

33.17

Weight (kDa)

6.17

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44640
fragaria_vesca	FvH4_7g08780 FvH4_7g08780 FvH4_7g08780 FvH4_7g08800
malus_domestica	MD02G1224900.v1.1 MD07G1088800.v1.1 MD07G1089000.v1.1 MD07G1089100.v1.1 MD07G1089700.v1.1 MD07G1089800.v1.1 MD07G1089900.v1.1 MD07G1090600.v1.1
prunus_persica	Prupe.2G115700_v2.0.a1 Prupe.2G115700_v2.0.a1
pyrus_communis	pycom02g17920 pycom02g17930 pycom02g19310 pycom07g07130
rosa_chinensis	RchiOBHm_Chr1g0344071
rosa_laevigata	RLG00000028928
rosa_multiflora	Rmu_sc0000251.1_g000013 Rmu_sc0000251.1_g000017 Rmu_sc0002276.1_g000004 Rmu_sc0002276.1_g000007 Rmu_sc0002297.1_g000007 Rmu_sc0002297.1_g000013 Rmu_ssc0000434.1_g000008
rosa_roxburghii	Rroxscaffold_4G00310080
rosa_rugosa	Rorug01G0171400 Rorug01G0171500 Rorug05G0553700 Rorug05G0553800
rosa_samantha	Rh1AG188100 Rh1BG154200 Rh1CG173600 Rh1DG186300 Rh5BG101000
rosa_wichuraiana	Rw1G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	499
Acc65I	GGTACC	1 cut(s)	405
AccB1I	GGYRCC	2 cut(s)	405, 469
AciI	CCGC	3 cut(s)	78, 403, 598
AcoI	YGGCCR	1 cut(s)	599
AcsI	RAATTY	1 cut(s)	806
AfaI	GTAC	3 cut(s)	407, 420, 689
AfiI	CCNNNNNNNGG	2 cut(s)	16, 721
AjnI	CCWGG	5 cut(s)	441, 487, 671, 833, 849
AleI	CACNNNNGTG	1 cut(s)	414
AluBI	AGCT	2 cut(s)	260, 817
AluI	AGCT	2 cut(s)	260, 817
Alw21I	GWGCWC	2 cut(s)	121, 819
Alw26I	GTCTC	3 cut(s)	391, 545, 711
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	3 cut(s)	84, 308, 599
ApeKI	GCWGC	4 cut(s)	302, 506, 635, 663
ApoI	RAATTY	1 cut(s)	806
Asp718I	GGTACC	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	500
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	2 cut(s)	836, 898
AvaI	CYCGRG	1 cut(s)	120
AxyI	CCTNAGG	2 cut(s)	11, 137
BanI	GGYRCC	2 cut(s)	405, 469
BanII	GRGCYC	2 cut(s)	136, 819
Bbv12I	GWGCWC	2 cut(s)	121, 819
BbvI	GCAGC	4 cut(s)	289, 493, 622, 650
BccI	CCATC	2 cut(s)	610, 677
BceAI	ACGGC	2 cut(s)	33, 71
BciT130I	CCWGG	5 cut(s)	443, 489, 673, 835, 851
BciVI	GTATCC	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	93
BcoDI	GTCTC	3 cut(s)	391, 545, 711
BfmI	CTRYAG	1 cut(s)	636
BfuI	GTATCC	1 cut(s)	85
BglII	AGATCT	1 cut(s)	532
BisI	GCNGC	5 cut(s)	303, 507, 599, 636, 664
BlsI	GCNGC	5 cut(s)	304, 508, 600, 637, 665
Bme1390I	CCNGG	6 cut(s)	93, 443, 489, 673, 835, 851
BmeT110I	CYCGRG	1 cut(s)	120
BmiI	GGNNCC	3 cut(s)	173, 407, 471
BmrFI	CCNGG	6 cut(s)	93, 443, 489, 673, 835, 851
BmrI	ACTGGG	2 cut(s)	352, 689
BmsI	GCATC	1 cut(s)	832
BmuI	ACTGGG	2 cut(s)	352, 689
BpmI	CTGGAG	1 cut(s)	221
BpuEI	CTTGAG	2 cut(s)	89, 317
BpuMI	CCSGG	1 cut(s)	93
BsaJI	CCNNGG	3 cut(s)	81, 177, 441
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 721
Bse1I	ACTGG	3 cut(s)	238, 347, 695
Bse21I	CCTNAGG	2 cut(s)	11, 137
Bse3DI	GCAATG	1 cut(s)	27
BseBI	CCWGG	5 cut(s)	443, 489, 673, 835, 851
BseDI	CCNNGG	3 cut(s)	81, 177, 441
BseGI	GGATG	3 cut(s)	352, 436, 688
BseLI	CCNNNNNNNGG	2 cut(s)	16, 721
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	4 cut(s)	42, 74, 265, 345
BseNI	ACTGG	3 cut(s)	238, 347, 695
BseXI	GCAGC	4 cut(s)	289, 493, 622, 650
BsgI	GTGCAG	1 cut(s)	649
BshFI	GGCC	3 cut(s)	86, 310, 601
BshNI	GGYRCC	2 cut(s)	405, 469
BsiHKAI	GWGCWC	2 cut(s)	121, 819
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	3 cut(s)	53, 226, 230
BslI	CCNNNNNNNGG	2 cut(s)	16, 721
BsmAI	GTCTC	3 cut(s)	391, 545, 711
BsmBI	CGTCTC	1 cut(s)	711
BsmFI	GGGAC	3 cut(s)	53, 226, 230
BsnI	GGCC	3 cut(s)	86, 310, 601
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	3 cut(s)	121, 136, 819
Bsp1407I	TGTACA	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	532, 826
BspACI	CCGC	3 cut(s)	78, 403, 598
BspANI	GGCC	3 cut(s)	86, 310, 601
BspCNI	CTCAG	4 cut(s)	41, 73, 264, 346
BspHI	TCATGA	1 cut(s)	567
BspLI	GGNNCC	3 cut(s)	173, 407, 471
BspMAI	CTGCAG	1 cut(s)	640
BspT107I	GGYRCC	2 cut(s)	405, 469
BsrDI	GCAATG	1 cut(s)	27
BsrGI	TGTACA	1 cut(s)	418
BsrI	ACTGG	3 cut(s)	238, 347, 695
BssECI	CCNNGG	3 cut(s)	81, 177, 441
BssMI	GATC	2 cut(s)	532, 826
BssT1I	CCWWGG	2 cut(s)	81, 177
Bst2UI	CCWGG	5 cut(s)	443, 489, 673, 835, 851
Bst4CI	ACNGT	4 cut(s)	116, 318, 431, 824
Bst6I	CTCTTC	2 cut(s)	162, 740
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstAUI	TGTACA	1 cut(s)	418
BstC8I	GCNNGC	2 cut(s)	127, 847
BstDEI	CTNAG	7 cut(s)	11, 28, 60, 137, 251, 354, 367
BstF5I	GGATG	3 cut(s)	352, 436, 688
BstHHI	GCGC	1 cut(s)	500
BstKTI	GATC	2 cut(s)	535, 829
BstMAI	GTCTC	3 cut(s)	391, 545, 711
BstMBI	GATC	2 cut(s)	532, 826
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 506, 783
BstNI	CCWGG	5 cut(s)	443, 489, 673, 835, 851
BstSCI	CCNGG	6 cut(s)	91, 441, 487, 671, 833, 849
BstSFI	CTRYAG	1 cut(s)	636
BstV1I	GCAGC	4 cut(s)	289, 493, 622, 650
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
Bsu36I	CCTNAGG	2 cut(s)	11, 137
BsuI	GTATCC	1 cut(s)	85
BsuRI	GGCC	3 cut(s)	86, 310, 601
BtsCI	GGATG	3 cut(s)	352, 436, 688
BtsI	GCAGTG	1 cut(s)	666
BtsIMutI	CAGTG	3 cut(s)	436, 666, 702
Cac8I	GCNNGC	2 cut(s)	127, 847
CciI	TCATGA	1 cut(s)	567
CfoI	GCGC	1 cut(s)	500
CseI	GACGC	2 cut(s)	605, 855
Csp6I	GTAC	3 cut(s)	406, 419, 688
CviAII	CATG	4 cut(s)	284, 306, 568, 632
CviQI	GTAC	3 cut(s)	406, 419, 688
DdeI	CTNAG	7 cut(s)	11, 28, 60, 137, 251, 354, 367
DpnI	GATC	2 cut(s)	534, 828
DpnII	GATC	2 cut(s)	532, 826
EaeI	YGGCCR	1 cut(s)	599
Eam1104I	CTCTTC	2 cut(s)	162, 740
EarI	CTCTTC	2 cut(s)	162, 740
EciI	GGCGGA	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	817
Eco130I	CCWWGG	2 cut(s)	81, 177
Eco24I	GRGCYC	2 cut(s)	136, 819
Eco53kI	GAGCTC	1 cut(s)	817
Eco81I	CCTNAGG	2 cut(s)	11, 137
Eco88I	CYCGRG	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	817
EcoRII	CCWGG	5 cut(s)	441, 487, 671, 833, 849
EcoT14I	CCWWGG	2 cut(s)	81, 177
EcoT38I	GRGCYC	2 cut(s)	136, 819
ErhI	CCWWGG	2 cut(s)	81, 177
Esp3I	CGTCTC	1 cut(s)	711
FaeI	CATG	4 cut(s)	287, 309, 571, 635
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FaqI	GGGAC	3 cut(s)	53, 226, 230
FatI	CATG	4 cut(s)	283, 305, 567, 631
Fnu4HI	GCNGC	5 cut(s)	303, 507, 599, 636, 664
FokI	GGATG	3 cut(s)	359, 423, 695
FriOI	GRGCYC	2 cut(s)	136, 819
Fsp4HI	GCNGC	5 cut(s)	303, 507, 599, 636, 664
FspI	TGCGCA	1 cut(s)	499
GlaI	GCGC	1 cut(s)	499
GluI	GCNGC	5 cut(s)	303, 507, 599, 636, 664
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	3 cut(s)	86, 310, 601
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	2 cut(s)	605, 855
HhaI	GCGC	1 cut(s)	500
Hin1II	CATG	4 cut(s)	287, 309, 571, 635
Hin6I	GCGC	1 cut(s)	498
HinP1I	GCGC	1 cut(s)	498
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	5 cut(s)	26, 142, 356, 492, 541
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	836, 898
Hpy166II	GTNNAC	2 cut(s)	325, 419
Hpy188I	TCNGA	3 cut(s)	63, 254, 831
Hpy188III	TCNNGA	4 cut(s)	110, 396, 568, 680
Hpy8I	GTNNAC	2 cut(s)	325, 419
HpyAV	CCTTC	3 cut(s)	43, 201, 486
HpyCH4III	ACNGT	4 cut(s)	116, 318, 431, 824
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	3 cut(s)	305, 638, 666
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 506, 783
HpyF3I	CTNAG	7 cut(s)	11, 28, 60, 137, 251, 354, 367
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	4 cut(s)	287, 309, 571, 635
HspAI	GCGC	1 cut(s)	498
KpnI	GGTACC	1 cut(s)	409
Kzo9I	GATC	2 cut(s)	532, 826
LmnI	GCTCC	1 cut(s)	735
Lsp1109I	GCAGC	4 cut(s)	289, 493, 622, 650
LweI	GCATC	1 cut(s)	832
MaeII	ACGT	1 cut(s)	48
MalI	GATC	2 cut(s)	534, 828
MboI	GATC	2 cut(s)	532, 826
MboII	GAAGA	3 cut(s)	45, 149, 757
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	3 cut(s)	121, 136, 819
MluCI	AATT	4 cut(s)	360, 451, 727, 806
MlyI	GAGTC	3 cut(s)	20, 365, 550
MseI	TTAA	2 cut(s)	450, 621
MslI	CAYNNNNRTG	1 cut(s)	414
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	6 cut(s)	93, 443, 489, 673, 835, 851
MvaI	CCWGG	5 cut(s)	443, 489, 673, 835, 851
MwoI	GCNNNNNNNGC	3 cut(s)	131, 506, 783
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	2 cut(s)	532, 826
NlaIII	CATG	4 cut(s)	287, 309, 571, 635
NlaIV	GGNNCC	3 cut(s)	173, 407, 471
NmeAIII	GCCGAG	2 cut(s)	155, 740
NsbI	TGCGCA	1 cut(s)	499
OliI	CACNNNNGTG	1 cut(s)	414
PaeR7I	CTCGAG	1 cut(s)	120
PagI	TCATGA	1 cut(s)	567
PcsI	WCGNNNNNNNCGW	1 cut(s)	127
PfeI	GAWTC	2 cut(s)	142, 492
PkrI	GCNGC	5 cut(s)	304, 508, 600, 637, 665
PleI	GAGTC	3 cut(s)	20, 364, 549
PpsI	GAGTC	3 cut(s)	20, 364, 549
Psp124BI	GAGCTC	1 cut(s)	819
Psp6I	CCWGG	5 cut(s)	441, 487, 671, 833, 849
PspGI	CCWGG	5 cut(s)	441, 487, 671, 833, 849
PspN4I	GGNNCC	3 cut(s)	173, 407, 471
PspXI	VCTCGAGB	1 cut(s)	120
PstI	CTGCAG	1 cut(s)	640
PsuI	RGATCY	1 cut(s)	532
RsaI	GTAC	3 cut(s)	407, 420, 689
RsaNI	GTAC	3 cut(s)	406, 419, 688
RseI	CAYNNNNRTG	1 cut(s)	414
SacI	GAGCTC	1 cut(s)	819
SaqAI	TTAA	2 cut(s)	450, 621
SatI	GCNGC	5 cut(s)	303, 507, 599, 636, 664
Sau3AI	GATC	2 cut(s)	532, 826
SchI	GAGTC	3 cut(s)	20, 365, 550
ScrFI	CCNGG	6 cut(s)	93, 443, 489, 673, 835, 851
SduI	GDGCHC	3 cut(s)	121, 136, 819
SfaNI	GCATC	1 cut(s)	832
SfcI	CTRYAG	1 cut(s)	636
Sfr274I	CTCGAG	1 cut(s)	120
SlaI	CTCGAG	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	414
SmlI	CTYRAG	3 cut(s)	68, 120, 296
SmoI	CTYRAG	3 cut(s)	68, 120, 296
Sse9I	AATT	4 cut(s)	360, 451, 727, 806
SsiI	CCGC	3 cut(s)	78, 403, 598
SstI	GAGCTC	1 cut(s)	819
StyD4I	CCNGG	6 cut(s)	91, 441, 487, 671, 833, 849
StyI	CCWWGG	2 cut(s)	81, 177
TaaI	ACNGT	4 cut(s)	116, 318, 431, 824
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	2 cut(s)	111, 121
TasI	AATT	4 cut(s)	360, 451, 727, 806
TatI	WGTACW	1 cut(s)	418
TauI	GCSGC	1 cut(s)	601
TfiI	GAWTC	2 cut(s)	142, 492
Tru1I	TTAA	2 cut(s)	450, 621
Tru9I	TTAA	2 cut(s)	450, 621
TscAI	CASTG	3 cut(s)	436, 673, 702
TseI	GCWGC	4 cut(s)	302, 506, 635, 663
TspDTI	ATGAA	1 cut(s)	534
TspGWI	ACGGA	1 cut(s)	816
TspRI	CASTG	3 cut(s)	436, 673, 702
XapI	RAATTY	1 cut(s)	806
XhoI	CTCGAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.