Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002739

Physical Location & Seq

Genomic Coordinates Reverse (-)

23323517 .. 23329747

Gene Structure 6231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0171400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCAGAGTTCCGCGCTAGTTCCTCACAATGGTCCTCAGAAACTCTTTACAGAGACTGTCGAATATTGCTCAAGTTTTTCGAATATTGTGAAGAAGCGGTTAAGGTGATCCGCACGAAAGATGAAAAAGCCACTATTAACAAGATTTGCTCCCAAATTTCTTGGGAGTCATTGGACACCGAATTGAACTTCTTAGAAAGGGAATGGATATCAAAGAATAGGACGAAGTTTGCTTATAATCAGTTGTCCAAGCTTAAGTGTCTTGAAATAGTTGATATGAAGGAGAAGGTTGCTCTTGAGATAGAAGAACAACACGATCCTATTGTGTCGGATGTTGAGGTTATTCTAAAGGCGGAGCCTGACACTCTAATTGCAAAACTCAAAGAATTTCTTGGACTTTATAATAAGGAAAATGAAATACAATCAGCTTGTTTGCCCAACTCAGTTATTGCTGCTGTCCAAACTATGGGATGTTTACCATTATCATATACTGGTTTGTCCCTCAAAGAACTGTCGAAAGGTAAAGAGGCTGAAAAGGTTTCGGAGAATCTTTCGGATCATCTTTTGCAGGCTAAGTGGCTCATCAATAGAATTCATTCTATTCACCGTATTGAAATTCCAAAAAAAGAGCTGTTAGAGAAGATATTTTCAGGTGAAATTGAAGAGTTACTTCAATTATTCCAGAAAGTAGCTCCACAATGTATCTCTGAAAAGAAGATACAAAAGGAGTCCATCTTGAACATTAATAGGAACTTCGATTCCAAATTGATACTTGAAAGGAGTAAAAGTTTGGATTTTGAGACGCAACAGATGATTTCCAGCCTGCATACTTGGATTGAGTCAACAAGTCGTACTCAAATCACCCGAAAGGAGTTTATACAAAATATAACTTGGAGTGATCTCTATTCTGTACACAGAAGGAATGTTGAAGATCTTCTAGAATTGGTACTTTTGCTTGGCCCCACATGGATTTGGGAAGAAGTGAAAAATAATAAAGTAATCTATAGGATTGATAGAGACATAACTCTTGAGTCAGTCTCCTGGATTGAAAAGGCACAGCTCAAATTAGCAATGGAACAACTGGGTGCACCTGTATTGATTCGAAATAGAGCTGAGTGCCTGCAAGTTCTTAGAAACTCTTTACATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3769

Protein Analysis

383

Amino Acids

44.65

Weight (kDa)

5.96

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44640
fragaria_vesca	FvH4_7g08780 FvH4_7g08780 FvH4_7g08780 FvH4_7g08800
malus_domestica	MD02G1224900.v1.1 MD07G1088800.v1.1 MD07G1089000.v1.1 MD07G1089100.v1.1 MD07G1089700.v1.1 MD07G1089800.v1.1 MD07G1089900.v1.1 MD07G1090600.v1.1
prunus_persica	Prupe.2G115700_v2.0.a1 Prupe.2G115700_v2.0.a1
pyrus_communis	pycom02g17920 pycom02g17930 pycom02g19310 pycom07g07130
rosa_chinensis	RchiOBHm_Chr1g0344071
rosa_laevigata	RLG00000028928
rosa_multiflora	Rmu_sc0000251.1_g000013 Rmu_sc0000251.1_g000017 Rmu_sc0002276.1_g000004 Rmu_sc0002276.1_g000007 Rmu_sc0002297.1_g000007 Rmu_sc0002297.1_g000013 Rmu_ssc0000434.1_g000008
rosa_roxburghii	Rroxscaffold_4G00310080
rosa_rugosa	Rorug01G0171400 Rorug01G0171500 Rorug05G0553700 Rorug05G0553800
rosa_samantha	Rh1AG188100 Rh1BG154200 Rh1CG173600 Rh1DG186300 Rh5BG101000
rosa_wichuraiana	Rw1G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	237, 402
AccB7I	CCANNNNNTGG	1 cut(s)	466
AccII	CGCG	1 cut(s)	15
AciI	CCGC	4 cut(s)	13, 98, 112, 353
AclWI	GGATC	3 cut(s)	103, 311, 564
AcsI	RAATTY	4 cut(s)	156, 386, 591, 615
AfaI	GTAC	3 cut(s)	853, 912, 948
AfiI	CCNNNNNNNGG	2 cut(s)	30, 466
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	9 cut(s)	187, 266, 614, 662, 674, 739, 776, 929, 1049
AjnI	CCWGG	1 cut(s)	1040
AloI	GAACNNNNNNTCC	2 cut(s)	743, 775
AluBI	AGCT	6 cut(s)	253, 428, 631, 692, 1060, 1112
AluI	AGCT	6 cut(s)	253, 428, 631, 692, 1060, 1112
Alw21I	GWGCWC	1 cut(s)	1090
Alw26I	GTCTC	4 cut(s)	48, 794, 1011, 1042
Alw44I	GTGCAC	1 cut(s)	1086
AlwI	GGATC	3 cut(s)	103, 311, 564
AlwNI	CAGNNNCTG	1 cut(s)	57
AoxI	GGCC	1 cut(s)	958
ApaLI	GTGCAC	1 cut(s)	1086
ApeKI	GCWGC	1 cut(s)	452
ApoI	RAATTY	4 cut(s)	156, 386, 591, 615
AseI	ATTAAT	1 cut(s)	744
Asp700I	GAANNNNTTC	2 cut(s)	595, 933
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	2 cut(s)	33, 959
AsuHPI	GGTGA	4 cut(s)	118, 596, 665, 853
AsuII	TTCGAA	2 cut(s)	81, 1102
AvaII	GGWCC	1 cut(s)	33
BaeGI	GKGCMC	1 cut(s)	1090
Bbv12I	GWGCWC	1 cut(s)	1090
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	1 cut(s)	740
BciT130I	CCWGG	1 cut(s)	1042
BcoDI	GTCTC	4 cut(s)	48, 794, 1011, 1042
BfaI	CTAG	2 cut(s)	18, 938
BfmI	CTRYAG	1 cut(s)	1003
BfrI	CTTAAG	1 cut(s)	254
BglII	AGATCT	1 cut(s)	931
BisI	GCNGC	1 cut(s)	453
BlsI	GCNGC	1 cut(s)	454
Bme1390I	CCNGG	1 cut(s)	1042
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	2 cut(s)	33, 959
BmiI	GGNNCC	2 cut(s)	357, 961
BmrFI	CCNGG	1 cut(s)	1042
BmrI	ACTGGG	1 cut(s)	1091
BmuI	ACTGGG	1 cut(s)	1091
BplI	GAGNNNNNCTC	2 cut(s)	1022, 1054
Bpu14I	TTCGAA	2 cut(s)	81, 1102
BpuEI	CTTGAG	3 cut(s)	56, 317, 1049
BsaXI	ACNNNNNCTCC	2 cut(s)	772, 802
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 466
Bse1I	ACTGG	2 cut(s)	496, 1086
Bse3DI	GCAATG	1 cut(s)	1077
BseBI	CCWGG	1 cut(s)	1042
BseGI	GGATG	2 cut(s)	337, 476
BseLI	CCNNNNNNNGG	2 cut(s)	30, 466
BseMI	GCAATG	1 cut(s)	1077
BseMII	CTCAG	3 cut(s)	51, 456, 1104
BseNI	ACTGG	2 cut(s)	496, 1086
BseSI	GKGCMC	1 cut(s)	1090
BseXI	GCAGC	1 cut(s)	439
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	960
BsiHKAI	GWGCWC	1 cut(s)	1090
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	2 cut(s)	30, 466
BsmAI	GTCTC	4 cut(s)	48, 794, 1011, 1042
BsmBI	CGTCTC	1 cut(s)	794
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	1 cut(s)	960
Bsp119I	TTCGAA	2 cut(s)	81, 1102
Bsp1286I	GDGCHC	1 cut(s)	1090
Bsp1407I	TGTACA	1 cut(s)	910
Bsp143I	GATC	5 cut(s)	108, 316, 556, 898, 931
BspACI	CCGC	4 cut(s)	13, 98, 112, 353
BspANI	GGCC	1 cut(s)	960
BspCNI	CTCAG	3 cut(s)	50, 455, 1105
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	357, 961
BspPI	GGATC	3 cut(s)	103, 311, 564
BspT104I	TTCGAA	2 cut(s)	81, 1102
BspTI	CTTAAG	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	1077
BsrGI	TGTACA	1 cut(s)	910
BsrI	ACTGG	2 cut(s)	496, 1086
BssMI	GATC	5 cut(s)	108, 316, 556, 898, 931
Bst2UI	CCWGG	1 cut(s)	1042
Bst4CI	ACNGT	3 cut(s)	59, 513, 608
Bst6I	CTCTTC	1 cut(s)	657
BstAFI	CTTAAG	1 cut(s)	254
BstAUI	TGTACA	1 cut(s)	910
BstBI	TTCGAA	2 cut(s)	81, 1102
BstC8I	GCNNGC	3 cut(s)	570, 824, 1121
BstDEI	CTNAG	6 cut(s)	37, 193, 442, 573, 1113, 1130
BstF5I	GGATG	2 cut(s)	337, 476
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	5 cut(s)	111, 319, 559, 901, 934
BstMAI	GTCTC	4 cut(s)	48, 794, 1011, 1042
BstMBI	GATC	5 cut(s)	108, 316, 556, 898, 931
BstNI	CCWGG	1 cut(s)	1042
BstSCI	CCNGG	1 cut(s)	1040
BstSFI	CTRYAG	1 cut(s)	1003
BstSLI	GKGCMC	1 cut(s)	1090
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	439
BstX2I	RGATCY	1 cut(s)	931
BstYI	RGATCY	1 cut(s)	931
BsuRI	GGCC	1 cut(s)	960
BtsCI	GGATG	2 cut(s)	337, 476
Cac8I	GCNNGC	3 cut(s)	570, 824, 1121
CaiI	CAGNNNCTG	1 cut(s)	57
CfoI	GCGC	1 cut(s)	17
Cfr13I	GGNCC	2 cut(s)	33, 959
CseI	GACGC	1 cut(s)	811
Csp6I	GTAC	3 cut(s)	852, 911, 947
CviAII	CATG	1 cut(s)	966
CviQI	GTAC	3 cut(s)	852, 911, 947
DdeI	CTNAG	6 cut(s)	37, 193, 442, 573, 1113, 1130
DpnI	GATC	5 cut(s)	110, 318, 558, 900, 933
DpnII	GATC	5 cut(s)	108, 316, 556, 898, 931
Eam1104I	CTCTTC	1 cut(s)	657
EarI	CTCTTC	1 cut(s)	657
EciI	GGCGGA	1 cut(s)	368
Eco32I	GATATC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	591
EcoRII	CCWGG	1 cut(s)	1040
EcoRV	GATATC	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	794
FaeI	CATG	1 cut(s)	969
FalI	AAGNNNNNCTT	4 cut(s)	375, 407, 654, 686
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	1 cut(s)	965
FauNDI	CATATG	1 cut(s)	1146
Fnu4HI	GCNGC	1 cut(s)	453
FokI	GGATG	2 cut(s)	344, 483
Fsp4HI	GCNGC	1 cut(s)	453
FspBI	CTAG	2 cut(s)	18, 938
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	1 cut(s)	453
HaeIII	GGCC	1 cut(s)	960
HgaI	GACGC	1 cut(s)	811
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	969
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HincII	GTYRAC	1 cut(s)	843
HindII	GTYRAC	1 cut(s)	843
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	7 cut(s)	167, 547, 728, 758, 839, 1031, 1099
HphI	GGTGA	4 cut(s)	118, 596, 665, 853
Hpy166II	GTNNAC	4 cut(s)	476, 843, 913, 1088
Hpy188I	TCNGA	5 cut(s)	40, 331, 544, 556, 709
Hpy188III	TCNNGA	6 cut(s)	263, 296, 682, 736, 938, 1028
Hpy8I	GTNNAC	4 cut(s)	476, 843, 913, 1088
HpyAV	CCTTC	3 cut(s)	274, 280, 912
HpyCH4III	ACNGT	3 cut(s)	59, 513, 608
HpyCH4V	TGCA	5 cut(s)	374, 568, 826, 1088, 1123
HpyF3I	CTNAG	6 cut(s)	37, 193, 442, 573, 1113, 1130
Hsp92II	CATG	1 cut(s)	969
HspAI	GCGC	1 cut(s)	15
Kzo9I	GATC	5 cut(s)	108, 316, 556, 898, 931
LmnI	GCTCC	3 cut(s)	155, 355, 697
Lsp1109I	GCAGC	1 cut(s)	439
MaeI	CTAG	2 cut(s)	18, 938
MaeIII	GTNAC	1 cut(s)	666
MalI	GATC	5 cut(s)	110, 318, 558, 900, 933
MboI	GATC	5 cut(s)	108, 316, 556, 898, 931
MboII	GAAGA	8 cut(s)	104, 317, 652, 674, 727, 926, 941, 989
MflI	RGATCY	1 cut(s)	931
MhlI	GDGCHC	1 cut(s)	1090
MlyI	GAGTC	4 cut(s)	176, 737, 848, 1040
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	5 cut(s)	34, 46, 331, 512, 520
MroXI	GAANNNNTTC	2 cut(s)	595, 933
MseI	TTAA	4 cut(s)	102, 138, 255, 744
MspCI	CTTAAG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	1042
MvaI	CCWGG	1 cut(s)	1042
MvnI	CGCG	1 cut(s)	15
NdeI	CATATG	1 cut(s)	1146
NdeII	GATC	5 cut(s)	108, 316, 556, 898, 931
NlaIII	CATG	1 cut(s)	969
NlaIV	GGNNCC	2 cut(s)	357, 961
NspV	TTCGAA	2 cut(s)	81, 1102
PdmI	GAANNNNTTC	2 cut(s)	595, 933
PfeI	GAWTC	3 cut(s)	547, 758, 1099
PflMI	CCANNNNNTGG	1 cut(s)	466
PfoI	TCCNGGA	1 cut(s)	1040
PkrI	GCNGC	1 cut(s)	454
PleI	GAGTC	4 cut(s)	175, 736, 847, 1039
PpsI	GAGTC	4 cut(s)	175, 736, 847, 1039
PshBI	ATTAAT	1 cut(s)	744
PsiI	TTATAA	2 cut(s)	237, 402
Psp6I	CCWGG	1 cut(s)	1040
PspGI	CCWGG	1 cut(s)	1040
PspN4I	GGNNCC	2 cut(s)	357, 961
PspPI	GGNCC	2 cut(s)	33, 959
PstNI	CAGNNNCTG	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	931
RsaI	GTAC	3 cut(s)	853, 912, 948
RsaNI	GTAC	3 cut(s)	852, 911, 947
SaqAI	TTAA	4 cut(s)	102, 138, 255, 744
SatI	GCNGC	1 cut(s)	453
Sau3AI	GATC	5 cut(s)	108, 316, 556, 898, 931
Sau96I	GGNCC	2 cut(s)	33, 959
SchI	GAGTC	4 cut(s)	176, 737, 848, 1040
ScrFI	CCNGG	1 cut(s)	1042
SduI	GDGCHC	1 cut(s)	1090
SfcI	CTRYAG	1 cut(s)	1003
SfuI	TTCGAA	2 cut(s)	81, 1102
SinI	GGWCC	1 cut(s)	33
SmlI	CTYRAG	4 cut(s)	71, 254, 296, 1028
SmoI	CTYRAG	4 cut(s)	71, 254, 296, 1028
SsiI	CCGC	4 cut(s)	13, 98, 112, 353
SspI	AATATT	2 cut(s)	66, 86
SspMI	CTAG	2 cut(s)	18, 938
StyD4I	CCNGG	1 cut(s)	1040
TaaI	ACNGT	3 cut(s)	59, 513, 608
TaqI	TCGA	5 cut(s)	61, 81, 515, 756, 1102
TatI	WGTACW	1 cut(s)	910
TfiI	GAWTC	3 cut(s)	547, 758, 1099
Tru1I	TTAA	4 cut(s)	102, 138, 255, 744
Tru9I	TTAA	4 cut(s)	102, 138, 255, 744
TseI	GCWGC	1 cut(s)	452
TspDTI	ATGAA	4 cut(s)	138, 293, 429, 584
Van91I	CCANNNNNTGG	1 cut(s)	466
Vha464I	CTTAAG	1 cut(s)	254
VneI	GTGCAC	1 cut(s)	1086
VpaK11BI	GGWCC	1 cut(s)	33
VspI	ATTAAT	1 cut(s)	744
XapI	RAATTY	4 cut(s)	156, 386, 591, 615
XbaI	TCTAGA	1 cut(s)	937
XmnI	GAANNNNTTC	2 cut(s)	595, 933
XspI	CTAG	2 cut(s)	18, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.