Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002276.1

Orthogroup ID

OG0002739

Physical Location & Seq

Genomic Coordinates Forward (+)

36141 .. 38799

Gene Structure 2659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002276.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atggagaagatgaacaagttttactttaccggccagaaactgccaaagaaaactgacgacgaccccatttcccatttcagcatttctcattctttttgttctatcgagaatccccaaacaaccaaactcaattcttccggacttccagtcttcgatagtccgacttcgactctctgccgttctgcaattcaatcttggattgatgatcttgaaggtgggagttttgcagcctggtttcaggatgggaacagcccagtggctgttgaactaagaggagatgggaacactttttcaagtactaagaagagaagtcctgtcaatgctcgcctggatattggttcagcttcagctcttgctaaaagggttgtcaatggcttcaagagttcctctggtaatagtgctatagatcctatatcctcccctaggatcaatctaatctttcaacagcaggttgtggggccaattgtctttcgagcggattcaagggtttcactagcctctttgcctgggaaacgtggtccacatattgaggatttcatttacagcttgagctactccttgaggcttttacagtcgggcaaggttgttgcttggtattccccgaaaagaaaagaaggaatgattgagttgcgggtgtttgagttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3769

Protein Analysis

215

Amino Acids

23.69

Weight (kDa)

9.39

Isoelectric Point (pI)

60.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44640
fragaria_vesca	FvH4_7g08780 FvH4_7g08780 FvH4_7g08780 FvH4_7g08800
malus_domestica	MD02G1224900.v1.1 MD07G1088800.v1.1 MD07G1089000.v1.1 MD07G1089100.v1.1 MD07G1089700.v1.1 MD07G1089800.v1.1 MD07G1089900.v1.1 MD07G1090600.v1.1
prunus_persica	Prupe.2G115700_v2.0.a1 Prupe.2G115700_v2.0.a1
pyrus_communis	pycom02g17920 pycom02g17930 pycom02g19310 pycom07g07130
rosa_chinensis	RchiOBHm_Chr1g0344071
rosa_laevigata	RLG00000028928
rosa_multiflora	Rmu_sc0000251.1_g000013 Rmu_sc0000251.1_g000017 Rmu_sc0002276.1_g000004 Rmu_sc0002276.1_g000007 Rmu_sc0002297.1_g000007 Rmu_sc0002297.1_g000013 Rmu_ssc0000434.1_g000008
rosa_roxburghii	Rroxscaffold_4G00310080
rosa_rugosa	Rorug01G0171400 Rorug01G0171500 Rorug05G0553700 Rorug05G0553800
rosa_samantha	Rh1AG188100 Rh1BG154200 Rh1CG173600 Rh1DG186300 Rh5BG101000
rosa_wichuraiana	Rw1G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	439
AccBSI	CCGCTC	1 cut(s)	476
AccIII	TCCGGA	1 cut(s)	137
AciI	CCGC	2 cut(s)	476, 631
AclWI	GGATC	2 cut(s)	401, 434
AcoI	YGGCCR	1 cut(s)	31
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	1 cut(s)	423
AgsI	TTSAA	7 cut(s)	191, 212, 266, 294, 379, 443, 483
AhdI	GACNNNNNGTC	1 cut(s)	146
AjnI	CCWGG	3 cut(s)	230, 327, 505
AluBI	AGCT	4 cut(s)	344, 350, 546, 552
AluI	AGCT	4 cut(s)	344, 350, 546, 552
AlwI	GGATC	2 cut(s)	401, 434
AlwNI	CAGNNNCTG	2 cut(s)	40, 260
Aor13HI	TCCGGA	1 cut(s)	137
AoxI	GGCC	2 cut(s)	31, 458
ApeKI	GCWGC	1 cut(s)	227
AspA2I	CCTAGG	1 cut(s)	422
AspS9I	GGNCC	2 cut(s)	458, 518
AvaII	GGWCC	1 cut(s)	518
AvrII	CCTAGG	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	239
BccI	CCATC	2 cut(s)	236, 272
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	3 cut(s)	232, 329, 507
BfaI	CTAG	2 cut(s)	423, 494
BfmI	CTRYAG	1 cut(s)	402
BfuAI	ACCTGC	1 cut(s)	439
BisI	GCNGC	1 cut(s)	228
BlnI	CCTAGG	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	229
BmcAI	AGTACT	1 cut(s)	298
Bme1390I	CCNGG	3 cut(s)	232, 329, 507
Bme18I	GGWCC	1 cut(s)	518
BmeRI	GACNNNNNGTC	1 cut(s)	146
BmgT120I	GGNCC	2 cut(s)	458, 518
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	3 cut(s)	232, 329, 507
BmrI	ACTGGG	1 cut(s)	248
BmuI	ACTGGG	1 cut(s)	248
BpiI	GAAGAC	1 cut(s)	142
BpuEI	CTTGAG	2 cut(s)	568, 580
BsaJI	CCNNGG	2 cut(s)	422, 506
BsaWI	WCCGGW	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	1 cut(s)	423
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	146, 254
BseAI	TCCGGA	1 cut(s)	137
BseBI	CCWGG	3 cut(s)	232, 329, 507
BseDI	CCNNGG	2 cut(s)	422, 506
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	423
BseNI	ACTGG	2 cut(s)	146, 254
BseRI	GAGGAG	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	239
BshFI	GGCC	2 cut(s)	33, 460
BsiSI	CCGG	2 cut(s)	30, 138
BslI	CCNNNNNNNGG	1 cut(s)	423
BsnI	GGCC	2 cut(s)	33, 460
Bsp13I	TCCGGA	1 cut(s)	137
Bsp143I	GATC	3 cut(s)	205, 406, 426
BspACI	CCGC	2 cut(s)	476, 631
BspANI	GGCC	2 cut(s)	33, 460
BspEI	TCCGGA	1 cut(s)	137
BspLI	GGNNCC	1 cut(s)	459
BspMI	ACCTGC	1 cut(s)	439
BspPI	GGATC	2 cut(s)	401, 434
BsrBI	CCGCTC	1 cut(s)	476
BsrFI	RCCGGY	1 cut(s)	29
BsrI	ACTGG	2 cut(s)	146, 254
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	422, 506
BssMI	GATC	3 cut(s)	205, 406, 426
BssT1I	CCWWGG	1 cut(s)	422
Bst2UI	CCWGG	3 cut(s)	232, 329, 507
Bst4CI	ACNGT	1 cut(s)	573
Bst6I	CTCTTC	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	2 cut(s)	269, 300
BstENI	CCTNNNNNAGG	1 cut(s)	421
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	3 cut(s)	208, 409, 429
BstMBI	GATC	3 cut(s)	205, 406, 426
BstNI	CCWGG	3 cut(s)	232, 329, 507
BstSCI	CCNGG	3 cut(s)	230, 327, 505
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	239
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BsuRI	GGCC	2 cut(s)	33, 460
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	261
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	325
CaiI	CAGNNNCTG	2 cut(s)	40, 260
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	2 cut(s)	458, 518
Csp6I	GTAC	1 cut(s)	297
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	2 cut(s)	269, 300
DpnI	GATC	3 cut(s)	207, 408, 428
DpnII	GATC	3 cut(s)	205, 406, 426
DriI	GACNNNNNGTC	1 cut(s)	146
EaeI	YGGCCR	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	299
Eam1105I	GACNNNNNGTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	299
Eco130I	CCWWGG	1 cut(s)	422
Eco47I	GGWCC	1 cut(s)	518
Eco57I	CTGAAG	1 cut(s)	330
EcoNI	CCTNNNNNAGG	1 cut(s)	421
EcoRII	CCWGG	3 cut(s)	230, 327, 505
EcoT14I	CCWWGG	1 cut(s)	422
ErhI	CCWWGG	1 cut(s)	422
FaiI	YATR	3 cut(s)	404, 413, 525
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FauI	CCCGC	1 cut(s)	624
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	2 cut(s)	423, 494
GluI	GCNGC	1 cut(s)	228
HaeIII	GGCC	2 cut(s)	33, 460
HapII	CCGG	2 cut(s)	30, 138
HinfI	GANTC	3 cut(s)	109, 169, 479
HpaII	CCGG	2 cut(s)	30, 138
Hpy166II	GTNNAC	1 cut(s)	521
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	5 cut(s)	106, 138, 209, 239, 379
Hpy8I	GTNNAC	1 cut(s)	521
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	206, 608
HpyCH4III	ACNGT	1 cut(s)	573
HpyCH4IV	ACGT	1 cut(s)	514
HpyCH4V	TGCA	2 cut(s)	185, 227
HpyF3I	CTNAG	2 cut(s)	269, 300
HpySE526I	ACGT	1 cut(s)	514
Kpn2I	TCCGGA	1 cut(s)	137
Kzo9I	GATC	3 cut(s)	205, 406, 426
Lsp1109I	GCAGC	1 cut(s)	239
MaeI	CTAG	2 cut(s)	423, 494
MaeII	ACGT	1 cut(s)	514
MalI	GATC	3 cut(s)	207, 408, 428
MbiI	CCGCTC	1 cut(s)	476
MboI	GATC	3 cut(s)	205, 406, 426
MboII	GAAGA	4 cut(s)	19, 126, 142, 316
MfeI	CAATTG	1 cut(s)	462
MflI	RGATCY	1 cut(s)	406
MluCI	AATT	3 cut(s)	130, 186, 462
MlyI	GAGTC	1 cut(s)	163
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	6 cut(s)	266, 397, 427, 508, 523, 555
MroI	TCCGGA	1 cut(s)	137
MseI	TTAA	1 cut(s)	646
MspI	CCGG	2 cut(s)	30, 138
MspR9I	CCNGG	3 cut(s)	232, 329, 507
MunI	CAATTG	1 cut(s)	462
MvaI	CCWGG	3 cut(s)	232, 329, 507
NdeII	GATC	3 cut(s)	205, 406, 426
NlaIV	GGNNCC	1 cut(s)	459
PfeI	GAWTC	2 cut(s)	109, 479
PkrI	GCNGC	1 cut(s)	229
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Psp6I	CCWGG	3 cut(s)	230, 327, 505
PspGI	CCWGG	3 cut(s)	230, 327, 505
PspN4I	GGNNCC	1 cut(s)	459
PspPI	GGNCC	2 cut(s)	458, 518
PsrI	GAACNNNNNNTAC	1 cut(s)	37
PstNI	CAGNNNCTG	2 cut(s)	40, 260
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	646
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	3 cut(s)	205, 406, 426
Sau96I	GGNCC	2 cut(s)	458, 518
ScaI	AGTACT	1 cut(s)	298
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	3 cut(s)	232, 329, 507
SetI	ASST	8 cut(s)	217, 346, 352, 453, 517, 548, 554, 585
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	1 cut(s)	518
SmlI	CTYRAG	2 cut(s)	547, 559
SmoI	CTYRAG	2 cut(s)	547, 559
Sse9I	AATT	3 cut(s)	130, 186, 462
SsiI	CCGC	2 cut(s)	476, 631
SspMI	CTAG	2 cut(s)	423, 494
StyD4I	CCNGG	3 cut(s)	230, 327, 505
StyI	CCWWGG	1 cut(s)	422
TaaI	ACNGT	1 cut(s)	573
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	4 cut(s)	105, 153, 167, 472
TasI	AATT	3 cut(s)	130, 186, 462
TatI	WGTACW	1 cut(s)	296
TfiI	GAWTC	2 cut(s)	109, 479
Tru1I	TTAA	1 cut(s)	646
Tru9I	TTAA	1 cut(s)	646
TscAI	CASTG	1 cut(s)	261
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	2 cut(s)	26, 526
TspRI	CASTG	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	518
XagI	CCTNNNNNAGG	1 cut(s)	421
XmaJI	CCTAGG	1 cut(s)	422
XspI	CTAG	2 cut(s)	423, 494
ZrmI	AGTACT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.