pycom02g19310

Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
17188012 .. 17191615
3604 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g19310.2

Sequence Viewer

Length: 1128 bp
ATGGCGAACCTGAGGACGGCAATGGACTCAGCGTTCTGGGACTTGAACGTTTCGTCGCCTCAGACCCTTGAGGGCTCCGCCAAGGCCGTTCCCGGCGACCCATTTCCTCTCGACGGCGCTCGAGCCAGCCGAGCCCTCAGGATTCAGCAACTCTCTCTTCTGGGAAATGGGTTCCCTTTGGGTATTATACCTTCCTACTCCCCCACTTCTCACAAGGAATTGGGTTCTTTCTCTCTCCAGTCCCTCTTGCTCAGACCAGCTACCTCTAACTGGTGGCTTGGATTAATTGGGCAGTTCCGCCCGAAGAAACTTTTTTCTTCTATTAAAGCTGAATTTACTAATGATGAGATGGAGGTCCCTGCATTCAAAGATGTGGCGAAGCATGTCTTCGACAAGTCACTTTATTCGTTTGGACTATGCACACAGCTTCTTTTGTCTCCGTCATCATCCATAAAGTTGAGCACAGAAGGGCATGGTGAGAAAAAAGGACGCCGCAACAAATTGATGCTCTTTCACAAGCTTCCTTACCATGATATTACACTTGAGGCTGCATGGCCTGAACTATTCGTTGACCATAAAGGAAATTACTGGGATGTGCCTGAATCAATTTCCTTAGACATGTCATCACTCATTTCTGAATCTGGATTGCGGTACCGCGTTGGTGTACATAAAAATAGTGGTCATCCCCAAGCAGTTAATTCCATAGATGGTGAGGCACCTACTTCTCTAATGCCTGGAGTGTGCGCAAAGGCTGCCTTTTCTTATGAAAAAAGCCAAGATCTTTGGAGGCAAAAGGAGACACAAAAAGACATCATGATACAGAAAGAAAAGGGTTGGTTTTGGCGGCCATCTTATGATGTGCGTCTTAAAGAACCTCATGCTGCAGTATCTGGAATTTTTGGTGGAAGCTGCGCAGCCTGGTTTCAGGATGGGTACAACCCAGTGGCAGTTGATATGAGGGGAGACGAGGACAATTCTAGGAGCAATAAGAAGAGAAGTCCATTCAGTGCTGATTTTTTTGGATCTCTCTGCTATAGTTACCAGCACGGGAAATTTAGAGAGCTCTTTGGTCGATCTGACCAGGATAGATGCTCGCCTGGATGTTTGTTCAGCTTCAGCTTTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

376

Amino Acids

41.87

Weight (kDa)

8.6

Isoelectric Point (pI)

48.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 745, 913
Acc65I GGTACC 1 cut(s) 651
AccB1I GGYRCC 2 cut(s) 651, 715
AccII CGCG 1 cut(s) 657
AciI CCGC 6 cut(s) 78, 298, 493, 649, 655, 844
AclI AACGTT 1 cut(s) 48
AclWI GGATC 1 cut(s) 1030
AcoI YGGCCR 1 cut(s) 845
AcsI RAATTY 3 cut(s) 332, 894, 1052
AcuI CTGAAG 1 cut(s) 1099
AcyI GRCGYC 1 cut(s) 490
AfaI GTAC 3 cut(s) 653, 666, 935
AfiI CCNNNNNNNGG 3 cut(s) 16, 113, 270
AflIII ACRYGT 1 cut(s) 618
AgsI TTSAA 2 cut(s) 46, 367
AjnI CCWGG 4 cut(s) 733, 917, 1080, 1096
AloI GAACNNNNNNTCC 2 cut(s) 17, 49
AluBI AGCT 8 cut(s) 260, 329, 427, 520, 909, 1063, 1113, 1119
AluI AGCT 8 cut(s) 260, 329, 427, 520, 909, 1063, 1113, 1119
Alw21I GWGCWC 2 cut(s) 464, 1065
Alw26I GTCTC 3 cut(s) 441, 791, 957
AlwI GGATC 1 cut(s) 1030
AlwNI CAGNNNCTG 1 cut(s) 890
Ama87I CYCGRG 1 cut(s) 120
AoxI GGCC 3 cut(s) 84, 554, 845
ApeKI GCWGC 5 cut(s) 548, 752, 881, 909, 914
ApoI RAATTY 3 cut(s) 332, 894, 1052
AseI ATTAAT 1 cut(s) 284
Asp718I GGTACC 1 cut(s) 651
AspLEI GCGC 3 cut(s) 119, 746, 914
AspS9I GGNCC 1 cut(s) 355
AsuC2I CCSGG 1 cut(s) 93
AsuHPI GGTGA 2 cut(s) 488, 722
AvaI CYCGRG 1 cut(s) 120
AvaII GGWCC 1 cut(s) 355
AxyI CCTNAGG 2 cut(s) 11, 137
BanI GGYRCC 2 cut(s) 651, 715
BanII GRGCYC 3 cut(s) 77, 136, 1065
BarI GAAGNNNNNNTAC 2 cut(s) 175, 207
BbsI GAAGAC 1 cut(s) 379
Bbv12I GWGCWC 2 cut(s) 464, 1065
BbvI GCAGC 5 cut(s) 535, 739, 868, 896, 926
BccI CCATC 4 cut(s) 343, 701, 856, 923
BceAI ACGGC 3 cut(s) 33, 71, 130
BciT130I CCWGG 4 cut(s) 735, 919, 1082, 1098
BcnI CCSGG 1 cut(s) 93
BcoDI GTCTC 3 cut(s) 441, 791, 957
BfaI CTAG 1 cut(s) 978
BfmI CTRYAG 2 cut(s) 882, 1033
BfoI RGCGCY 1 cut(s) 120
BglII AGATCT 1 cut(s) 778
BisI GCNGC 7 cut(s) 493, 549, 753, 845, 882, 910, 915
BlsI GCNGC 7 cut(s) 494, 550, 754, 846, 883, 911, 916
Bme1390I CCNGG 5 cut(s) 93, 735, 919, 1082, 1098
Bme18I GGWCC 1 cut(s) 355
BmeT110I CYCGRG 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 355
BmiI GGNNCC 5 cut(s) 76, 173, 357, 653, 717
BmrFI CCNGG 5 cut(s) 93, 735, 919, 1082, 1098
BmrI ACTGGG 2 cut(s) 598, 935
BmsI GCATC 2 cut(s) 495, 1079
BmuI ACTGGG 2 cut(s) 598, 935
BpiI GAAGAC 1 cut(s) 379
BpmI CTGGAG 2 cut(s) 221, 756
BpuEI CTTGAG 2 cut(s) 89, 563
BpuMI CCSGG 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 490
BsaJI CCNNGG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 113, 270
Bse1I ACTGG 4 cut(s) 238, 275, 593, 941
Bse21I CCTNAGG 2 cut(s) 11, 137
Bse3DI GCAATG 1 cut(s) 27
BseBI CCWGG 4 cut(s) 735, 919, 1082, 1098
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 5 cut(s) 446, 598, 682, 934, 1106
BseLI CCNNNNNNNGG 3 cut(s) 16, 113, 270
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 4 cut(s) 42, 74, 151, 265
BseNI ACTGG 4 cut(s) 238, 275, 593, 941
BseXI GCAGC 5 cut(s) 535, 739, 868, 896, 926
Bsh1236I CGCG 1 cut(s) 657
BshFI GGCC 3 cut(s) 86, 556, 847
BshNI GGYRCC 2 cut(s) 651, 715
BsiHKAI GWGCWC 2 cut(s) 464, 1065
BsiHKCI CYCGRG 1 cut(s) 120
BsiSI CCGG 1 cut(s) 93
BslFI GGGAC 3 cut(s) 53, 226, 341
BslI CCNNNNNNNGG 3 cut(s) 16, 113, 270
BsmAI GTCTC 3 cut(s) 441, 791, 957
BsmBI CGTCTC 1 cut(s) 957
BsmFI GGGAC 3 cut(s) 53, 226, 341
BsmI GAATGC 1 cut(s) 362
BsnI GGCC 3 cut(s) 86, 556, 847
BsoBI CYCGRG 1 cut(s) 120
Bsp1286I GDGCHC 4 cut(s) 77, 136, 464, 1065
Bsp1407I TGTACA 1 cut(s) 664
Bsp143I GATC 3 cut(s) 778, 1022, 1073
BspACI CCGC 6 cut(s) 78, 298, 493, 649, 655, 844
BspANI GGCC 3 cut(s) 86, 556, 847
BspCNI CTCAG 4 cut(s) 41, 73, 150, 264
BspFNI CGCG 1 cut(s) 657
BspHI TCATGA 1 cut(s) 813
BspLI GGNNCC 5 cut(s) 76, 173, 357, 653, 717
BspMAI CTGCAG 1 cut(s) 886
BspPI GGATC 1 cut(s) 1030
BspT107I GGYRCC 2 cut(s) 651, 715
BsrDI GCAATG 1 cut(s) 27
BsrGI TGTACA 1 cut(s) 664
BsrI ACTGG 4 cut(s) 238, 275, 593, 941
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 3 cut(s) 778, 1022, 1073
BssNI GRCGYC 1 cut(s) 490
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 4 cut(s) 735, 919, 1082, 1098
Bst6I CTCTTC 2 cut(s) 162, 986
BstACI GRCGYC 1 cut(s) 490
BstAPI GCANNNNNTGC 1 cut(s) 752
BstAUI TGTACA 1 cut(s) 664
BstC8I GCNNGC 2 cut(s) 127, 1094
BstDEI CTNAG 6 cut(s) 11, 28, 60, 137, 251, 613
BstF5I GGATG 5 cut(s) 446, 598, 682, 934, 1106
BstFNI CGCG 1 cut(s) 657
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 3 cut(s) 119, 746, 914
BstKTI GATC 3 cut(s) 781, 1025, 1076
BstMAI GTCTC 3 cut(s) 441, 791, 957
BstMBI GATC 3 cut(s) 778, 1022, 1073
BstMWI GCNNNNNNNGC 2 cut(s) 131, 752
BstNI CCWGG 4 cut(s) 735, 919, 1082, 1098
BstNSI RCATGY 2 cut(s) 386, 622
BstSCI CCNGG 5 cut(s) 91, 733, 917, 1080, 1096
BstSFI CTRYAG 2 cut(s) 882, 1033
BstUI CGCG 1 cut(s) 657
BstV1I GCAGC 5 cut(s) 535, 739, 868, 896, 926
BstV2I GAAGAC 1 cut(s) 379
BstX2I RGATCY 2 cut(s) 778, 1022
BstYI RGATCY 2 cut(s) 778, 1022
Bsu36I CCTNAGG 2 cut(s) 11, 137
BsuRI GGCC 3 cut(s) 86, 556, 847
BtsCI GGATG 5 cut(s) 446, 598, 682, 934, 1106
BtsIMutI CAGTG 2 cut(s) 948, 1012
Cac8I GCNNGC 2 cut(s) 127, 1094
CaiI CAGNNNCTG 1 cut(s) 890
CciI TCATGA 1 cut(s) 813
CfoI GCGC 3 cut(s) 119, 746, 914
Cfr13I GGNCC 1 cut(s) 355
CseI GACGC 2 cut(s) 498, 851
Csp6I GTAC 3 cut(s) 652, 665, 934
CviAII CATG 7 cut(s) 383, 473, 530, 552, 619, 814, 878
CviQI GTAC 3 cut(s) 652, 665, 934
DdeI CTNAG 6 cut(s) 11, 28, 60, 137, 251, 613
DpnI GATC 3 cut(s) 780, 1024, 1075
DpnII GATC 3 cut(s) 778, 1022, 1073
EaeI YGGCCR 1 cut(s) 845
Eam1104I CTCTTC 2 cut(s) 162, 986
EarI CTCTTC 2 cut(s) 162, 986
EciI GGCGGA 2 cut(s) 67, 287
Ecl136II GAGCTC 1 cut(s) 1063
Eco130I CCWWGG 1 cut(s) 81
Eco24I GRGCYC 3 cut(s) 77, 136, 1065
Eco47I GGWCC 1 cut(s) 355
Eco53kI GAGCTC 1 cut(s) 1063
Eco57I CTGAAG 1 cut(s) 1099
Eco81I CCTNAGG 2 cut(s) 11, 137
Eco88I CYCGRG 1 cut(s) 120
EcoICRI GAGCTC 1 cut(s) 1063
EcoO109I RGGNCCY 1 cut(s) 355
EcoRII CCWGG 4 cut(s) 733, 917, 1080, 1096
EcoT14I CCWWGG 1 cut(s) 81
EcoT38I GRGCYC 3 cut(s) 77, 136, 1065
ErhI CCWWGG 1 cut(s) 81
Esp3I CGTCTC 1 cut(s) 957
FaeI CATG 7 cut(s) 386, 476, 533, 555, 622, 817, 881
FalI AAGNNNNNCTT 4 cut(s) 371, 403, 740, 772
FaqI GGGAC 3 cut(s) 53, 226, 341
FatI CATG 7 cut(s) 382, 472, 529, 551, 618, 813, 877
Fnu4HI GCNGC 7 cut(s) 493, 549, 753, 845, 882, 910, 915
FokI GGATG 5 cut(s) 433, 605, 669, 941, 1113
FriOI GRGCYC 3 cut(s) 77, 136, 1065
Fsp4HI GCNGC 7 cut(s) 493, 549, 753, 845, 882, 910, 915
FspBI CTAG 1 cut(s) 978
FspI TGCGCA 2 cut(s) 745, 913
GlaI GCGC 3 cut(s) 118, 745, 913
GluI GCNGC 7 cut(s) 493, 549, 753, 845, 882, 910, 915
GsuI CTGGAG 2 cut(s) 221, 756
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 3 cut(s) 86, 556, 847
HapII CCGG 1 cut(s) 93
HgaI GACGC 2 cut(s) 498, 851
HhaI GCGC 3 cut(s) 119, 746, 914
Hin1I GRCGYC 1 cut(s) 490
Hin1II CATG 7 cut(s) 386, 476, 533, 555, 622, 817, 881
Hin6I GCGC 3 cut(s) 117, 744, 912
HinP1I GCGC 3 cut(s) 117, 744, 912
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HindIII AAGCTT 1 cut(s) 518
HinfI GANTC 4 cut(s) 26, 142, 602, 638
HpaII CCGG 1 cut(s) 93
HphI GGTGA 2 cut(s) 488, 722
Hpy166II GTNNAC 2 cut(s) 571, 665
Hpy188I TCNGA 4 cut(s) 63, 254, 637, 1078
Hpy188III TCNNGA 6 cut(s) 110, 139, 642, 814, 891, 926
Hpy8I GTNNAC 2 cut(s) 571, 665
Hpy99I CGWCG 2 cut(s) 58, 116
HpyAV CCTTC 2 cut(s) 201, 461
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 4 cut(s) 362, 420, 551, 884
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 752
HpyF3I CTNAG 6 cut(s) 11, 28, 60, 137, 251, 613
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 1 cut(s) 490
Hsp92II CATG 7 cut(s) 386, 476, 533, 555, 622, 817, 881
HspAI GCGC 3 cut(s) 117, 744, 912
KpnI GGTACC 1 cut(s) 655
Kzo9I GATC 3 cut(s) 778, 1022, 1073
LmnI GCTCC 2 cut(s) 80, 981
Lsp1109I GCAGC 5 cut(s) 535, 739, 868, 896, 926
LweI GCATC 2 cut(s) 495, 1079
MaeI CTAG 1 cut(s) 978
MaeII ACGT 1 cut(s) 48
MaeIII GTNAC 2 cut(s) 396, 1037
MalI GATC 3 cut(s) 780, 1024, 1075
MboI GATC 3 cut(s) 778, 1022, 1073
MboII GAAGA 5 cut(s) 149, 309, 316, 379, 1003
MflI RGATCY 2 cut(s) 778, 1022
MhlI GDGCHC 4 cut(s) 77, 136, 464, 1065
MlyI GAGTC 1 cut(s) 20
MseI TTAA 4 cut(s) 284, 324, 696, 867
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 5 cut(s) 93, 735, 919, 1082, 1098
Mva1269I GAATGC 1 cut(s) 362
MvaI CCWGG 4 cut(s) 735, 919, 1082, 1098
MvnI CGCG 1 cut(s) 657
MwoI GCNNNNNNNGC 2 cut(s) 131, 752
NciI CCSGG 1 cut(s) 93
NdeII GATC 3 cut(s) 778, 1022, 1073
NlaIII CATG 7 cut(s) 386, 476, 533, 555, 622, 817, 881
NlaIV GGNNCC 5 cut(s) 76, 173, 357, 653, 717
NmeAIII GCCGAG 1 cut(s) 155
NmuCI GTSAC 1 cut(s) 396
NsbI TGCGCA 2 cut(s) 745, 913
NspI RCATGY 2 cut(s) 386, 622
PaeR7I CTCGAG 1 cut(s) 120
PagI TCATGA 1 cut(s) 813
PciI ACATGT 1 cut(s) 618
PcsI WCGNNNNNNNCGW 1 cut(s) 127
PctI GAATGC 1 cut(s) 362
PfeI GAWTC 3 cut(s) 142, 602, 638
PkrI GCNGC 7 cut(s) 494, 550, 754, 846, 883, 911, 916
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
PpuMI RGGWCCY 1 cut(s) 355
PscI ACATGT 1 cut(s) 618
PshBI ATTAAT 1 cut(s) 284
Psp124BI GAGCTC 1 cut(s) 1065
Psp1406I AACGTT 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 355
Psp6I CCWGG 4 cut(s) 733, 917, 1080, 1096
PspGI CCWGG 4 cut(s) 733, 917, 1080, 1096
PspN4I GGNNCC 5 cut(s) 76, 173, 357, 653, 717
PspPI GGNCC 1 cut(s) 355
PspPPI RGGWCCY 1 cut(s) 355
PspXI VCTCGAGB 1 cut(s) 120
PstI CTGCAG 1 cut(s) 886
PstNI CAGNNNCTG 1 cut(s) 890
PsuI RGATCY 2 cut(s) 778, 1022
RsaI GTAC 3 cut(s) 653, 666, 935
RsaNI GTAC 3 cut(s) 652, 665, 934
SacI GAGCTC 1 cut(s) 1065
SaqAI TTAA 4 cut(s) 284, 324, 696, 867
SatI GCNGC 7 cut(s) 493, 549, 753, 845, 882, 910, 915
Sau3AI GATC 3 cut(s) 778, 1022, 1073
Sau96I GGNCC 1 cut(s) 355
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 5 cut(s) 93, 735, 919, 1082, 1098
SduI GDGCHC 4 cut(s) 77, 136, 464, 1065
SfaNI GCATC 2 cut(s) 495, 1079
SfcI CTRYAG 2 cut(s) 882, 1033
Sfr274I CTCGAG 1 cut(s) 120
SinI GGWCC 1 cut(s) 355
SlaI CTCGAG 1 cut(s) 120
SmlI CTYRAG 3 cut(s) 68, 120, 542
SmoI CTYRAG 3 cut(s) 68, 120, 542
SsiI CCGC 6 cut(s) 78, 298, 493, 649, 655, 844
SspMI CTAG 1 cut(s) 978
SstI GAGCTC 1 cut(s) 1065
StyD4I CCNGG 5 cut(s) 91, 733, 917, 1080, 1096
StyI CCWWGG 1 cut(s) 81
TaiI ACGT 1 cut(s) 51
TaqI TCGA 4 cut(s) 111, 121, 390, 1072
TatI WGTACW 1 cut(s) 664
TauI GCSGC 2 cut(s) 495, 847
TfiI GAWTC 3 cut(s) 142, 602, 638
Tru1I TTAA 4 cut(s) 284, 324, 696, 867
Tru9I TTAA 4 cut(s) 284, 324, 696, 867
TscAI CASTG 2 cut(s) 948, 1012
TseFI GTSAC 1 cut(s) 396
TseI GCWGC 5 cut(s) 548, 752, 881, 909, 914
Tsp45I GTSAC 1 cut(s) 396
TspDTI ATGAA 1 cut(s) 780
TspGWI ACGGA 1 cut(s) 429
TspRI CASTG 2 cut(s) 948, 1012
VpaK11BI GGWCC 1 cut(s) 355
VspI ATTAAT 1 cut(s) 284
XapI RAATTY 3 cut(s) 332, 894, 1052
XceI RCATGY 2 cut(s) 386, 622
XhoI CTCGAG 1 cut(s) 120
XspI CTAG 1 cut(s) 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.