Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002739

Physical Location & Seq

Genomic Coordinates Reverse (-)

9239153 .. 9241000

Gene Structure 1848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG101000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTTTAGACATCTGTCTTTTATGTTGACTATGCTAGTCAATAACCTTGAACATGTGGATTACTCTGAACATATGGCTAATTGTGACAAATTTCATGTCTGGAAGCTTTATATTCTTCATTTATCTTGCTGTTTTAATATTGGGTATGTGCTACTGAATGATTTTTCTCAACTTCTAAGATGTTTACAGCTACCTTATCATGACATCACACTAGAGGCTGCATGGCCTGAGCTGTTCATTGACCATAAAGGACAATATTGGGATGTACCGGAGTCAATTTCCTTAGATCTGTCATCACTTGTTTCTGAATCTGGATTGCGGTACCGGGTTGGTATACATAAAAATAGTGGCCATCCCCAGGCAGTTAATGCCGTAAATGATGAGGCACCTACTTCTCTGATGCCTGGATTGTGTGCAAAGGCTGCCTTTTCTTATGAAAAGAGCAGAGACCTTTGGAGGCAGAAGGAGACACAGAATGATCTCATGGTAAAGAAAGACAGGGGTTGGTTTTGGCGGCCATCATATGATGTGCGTCTCAAAGAACCTCATGCTGCAGTATCTGGAATTTTTGGTGGGACCTTTGCAGCCTGGTTTCAGGATGGGCACAGCCCAGTGGCTGTTGAACTTAGAGGAGATGGGAACACTTCTTCAAGTACTAAGAAGAGAAGTCCTGTCAGTGCTGATTTTTTTGGTTCAATTTGCTATCGCTTCCAGCATGGGAAATTTCGAGAGTTTTATGGGGATCTTTCAACAGCAGGGGAAATTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3769

Protein Analysis

256

Amino Acids

29.26

Weight (kDa)

6.45

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44640
fragaria_vesca	FvH4_7g08780 FvH4_7g08780 FvH4_7g08780 FvH4_7g08800
malus_domestica	MD02G1224900.v1.1 MD07G1088800.v1.1 MD07G1089000.v1.1 MD07G1089100.v1.1 MD07G1089700.v1.1 MD07G1089800.v1.1 MD07G1089900.v1.1 MD07G1090600.v1.1
prunus_persica	Prupe.2G115700_v2.0.a1 Prupe.2G115700_v2.0.a1
pyrus_communis	pycom02g17920 pycom02g17930 pycom02g19310 pycom07g07130
rosa_chinensis	RchiOBHm_Chr1g0344071
rosa_laevigata	RLG00000028928
rosa_multiflora	Rmu_sc0000251.1_g000013 Rmu_sc0000251.1_g000017 Rmu_sc0002276.1_g000004 Rmu_sc0002276.1_g000007 Rmu_sc0002297.1_g000007 Rmu_sc0002297.1_g000013 Rmu_ssc0000434.1_g000008
rosa_roxburghii	Rroxscaffold_4G00310080
rosa_rugosa	Rorug01G0171400 Rorug01G0171500 Rorug05G0553700 Rorug05G0553800
rosa_samantha	Rh1AG188100 Rh1BG154200 Rh1CG173600 Rh1DG186300 Rh5BG101000
rosa_wichuraiana	Rw1G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	321
AccB1I	GGYRCC	2 cut(s)	321, 385
AccI	GTMKAC	1 cut(s)	334
AciI	CCGC	2 cut(s)	319, 514
AclWI	GGATC	1 cut(s)	750
AcoI	YGGCCR	2 cut(s)	349, 515
AcsI	RAATTY	4 cut(s)	89, 564, 722, 762
AfaI	GTAC	3 cut(s)	267, 323, 655
AfiI	CCNNNNNNNGG	1 cut(s)	358
AflIII	ACRYGT	1 cut(s)	52
AgsI	TTSAA	5 cut(s)	50, 623, 651, 696, 750
AjnI	CCWGG	3 cut(s)	357, 403, 587
AluBI	AGCT	3 cut(s)	106, 190, 232
AluI	AGCT	3 cut(s)	106, 190, 232
Alw26I	GTCTC	3 cut(s)	441, 461, 539
AlwI	GGATC	1 cut(s)	750
AlwNI	CAGNNNCTG	2 cut(s)	560, 617
AoxI	GGCC	3 cut(s)	224, 349, 515
ApeKI	GCWGC	4 cut(s)	218, 422, 551, 584
ApoI	RAATTY	4 cut(s)	89, 564, 722, 762
ArsI	GACNNNNNNTTYG	2 cut(s)	81, 113
Asp718I	GGTACC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	576
AsuC2I	CCSGG	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	576
BaeGI	GKGCMC	1 cut(s)	606
BalI	TGGCCA	1 cut(s)	351
BanI	GGYRCC	2 cut(s)	321, 385
BbvI	GCAGC	4 cut(s)	205, 409, 538, 596
BccI	CCATC	4 cut(s)	360, 526, 593, 629
BceAI	ACGGC	1 cut(s)	356
BciT130I	CCWGG	3 cut(s)	359, 405, 589
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	3 cut(s)	441, 461, 539
BfaI	CTAG	2 cut(s)	35, 212
BfmI	CTRYAG	1 cut(s)	552
BglII	AGATCT	1 cut(s)	286
BisI	GCNGC	5 cut(s)	219, 423, 515, 552, 585
BlsI	GCNGC	5 cut(s)	220, 424, 516, 553, 586
BmcAI	AGTACT	1 cut(s)	655
Bme1390I	CCNGG	4 cut(s)	326, 359, 405, 589
Bme18I	GGWCC	1 cut(s)	576
BmgT120I	GGNCC	1 cut(s)	576
BmiI	GGNNCC	3 cut(s)	323, 387, 577
BmrFI	CCNGG	4 cut(s)	326, 359, 405, 589
BmrI	ACTGGG	1 cut(s)	605
BmsI	GCATC	1 cut(s)	390
BmuI	ACTGGG	1 cut(s)	605
BoxI	GACNNNNGTC	1 cut(s)	13
Bpu10I	CCTNAGC	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	326
BsaI	GGTCTC	1 cut(s)	441
BsaJI	CCNNGG	1 cut(s)	357
BsaWI	WCCGGW	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse1I	ACTGG	1 cut(s)	611
BseBI	CCWGG	3 cut(s)	359, 405, 589
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	3 cut(s)	268, 352, 604
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	611
BseRI	GAGGAG	1 cut(s)	645
BseSI	GKGCMC	1 cut(s)	606
BseXI	GCAGC	4 cut(s)	205, 409, 538, 596
BshFI	GGCC	3 cut(s)	226, 351, 517
BshNI	GGYRCC	2 cut(s)	321, 385
BsiSI	CCGG	2 cut(s)	269, 325
BslFI	GGGAC	1 cut(s)	589
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	3 cut(s)	441, 461, 539
BsmBI	CGTCTC	1 cut(s)	539
BsmFI	GGGAC	1 cut(s)	589
BsnI	GGCC	3 cut(s)	226, 351, 517
Bso31I	GGTCTC	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	606
Bsp143I	GATC	3 cut(s)	286, 478, 742
BspACI	CCGC	2 cut(s)	319, 514
BspANI	GGCC	3 cut(s)	226, 351, 517
BspCNI	CTCAG	1 cut(s)	220
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	3 cut(s)	323, 387, 577
BspMAI	CTGCAG	1 cut(s)	556
BspPI	GGATC	1 cut(s)	750
BspT107I	GGYRCC	2 cut(s)	321, 385
BspTNI	GGTCTC	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	611
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	3 cut(s)	286, 478, 742
BssNAI	GTATAC	1 cut(s)	335
Bst1107I	GTATAC	1 cut(s)	335
Bst2UI	CCWGG	3 cut(s)	359, 405, 589
Bst6I	CTCTTC	1 cut(s)	656
BstAPI	GCANNNNNTGC	2 cut(s)	368, 422
BstDEI	CTNAG	5 cut(s)	176, 228, 283, 626, 657
BstF5I	GGATG	3 cut(s)	268, 352, 604
BstKTI	GATC	3 cut(s)	289, 481, 745
BstMAI	GTCTC	3 cut(s)	441, 461, 539
BstMBI	GATC	3 cut(s)	286, 478, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	368, 422
BstNI	CCWGG	3 cut(s)	359, 405, 589
BstNSI	RCATGY	1 cut(s)	56
BstPAI	GACNNNNGTC	1 cut(s)	13
BstSCI	CCNGG	4 cut(s)	324, 357, 403, 587
BstSFI	CTRYAG	1 cut(s)	552
BstSLI	GKGCMC	1 cut(s)	606
BstV1I	GCAGC	4 cut(s)	205, 409, 538, 596
BstX2I	RGATCY	2 cut(s)	286, 742
BstYI	RGATCY	2 cut(s)	286, 742
BstZ17I	GTATAC	1 cut(s)	335
BsuRI	GGCC	3 cut(s)	226, 351, 517
BtsCI	GGATG	3 cut(s)	268, 352, 604
BtsIMutI	CAGTG	2 cut(s)	618, 682
CaiI	CAGNNNCTG	2 cut(s)	560, 617
CciI	TCATGA	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	576
CseI	GACGC	1 cut(s)	521
Csp6I	GTAC	3 cut(s)	266, 322, 654
CviAII	CATG	7 cut(s)	53, 95, 200, 222, 484, 548, 716
CviQI	GTAC	3 cut(s)	266, 322, 654
DdeI	CTNAG	5 cut(s)	176, 228, 283, 626, 657
DpnI	GATC	3 cut(s)	288, 480, 744
DpnII	GATC	3 cut(s)	286, 478, 742
EaeI	YGGCCR	2 cut(s)	349, 515
Eam1104I	CTCTTC	1 cut(s)	656
EarI	CTCTTC	1 cut(s)	656
Eco31I	GGTCTC	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	576
EcoO109I	RGGNCCY	1 cut(s)	576
EcoRII	CCWGG	3 cut(s)	357, 403, 587
Esp3I	CGTCTC	1 cut(s)	539
FaeI	CATG	7 cut(s)	56, 98, 203, 225, 487, 551, 719
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FaqI	GGGAC	1 cut(s)	589
FatI	CATG	7 cut(s)	52, 94, 199, 221, 483, 547, 715
FauNDI	CATATG	2 cut(s)	72, 523
FblI	GTMKAC	1 cut(s)	334
Fnu4HI	GCNGC	5 cut(s)	219, 423, 515, 552, 585
FokI	GGATG	3 cut(s)	275, 339, 611
Fsp4HI	GCNGC	5 cut(s)	219, 423, 515, 552, 585
FspBI	CTAG	2 cut(s)	35, 212
GluI	GCNGC	5 cut(s)	219, 423, 515, 552, 585
HaeIII	GGCC	3 cut(s)	226, 351, 517
HapII	CCGG	2 cut(s)	269, 325
HgaI	GACGC	1 cut(s)	521
Hin1II	CATG	7 cut(s)	56, 98, 203, 225, 487, 551, 719
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	2 cut(s)	272, 308
HpaII	CCGG	2 cut(s)	269, 325
Hpy166II	GTNNAC	3 cut(s)	27, 185, 335
Hpy188I	TCNGA	3 cut(s)	67, 307, 399
Hpy188III	TCNNGA	6 cut(s)	100, 200, 312, 561, 596, 728
Hpy8I	GTNNAC	3 cut(s)	27, 185, 335
HpyAV	CCTTC	1 cut(s)	457
HpyCH4V	TGCA	4 cut(s)	221, 416, 554, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	368, 422
HpyF3I	CTNAG	5 cut(s)	176, 228, 283, 626, 657
Hsp92II	CATG	7 cut(s)	56, 98, 203, 225, 487, 551, 719
KpnI	GGTACC	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	286, 478, 742
Lsp1109I	GCAGC	4 cut(s)	205, 409, 538, 596
LweI	GCATC	1 cut(s)	390
MaeI	CTAG	2 cut(s)	35, 212
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	3 cut(s)	288, 480, 744
MboI	GATC	3 cut(s)	286, 478, 742
MboII	GAAGA	3 cut(s)	107, 639, 673
MflI	RGATCY	2 cut(s)	286, 742
MhlI	GDGCHC	1 cut(s)	606
MlsI	TGGCCA	1 cut(s)	351
MluCI	AATT	7 cut(s)	79, 89, 276, 564, 696, 722, 762
MluNI	TGGCCA	1 cut(s)	351
MlyI	GAGTC	1 cut(s)	281
MnlI	CCTC	5 cut(s)	208, 376, 450, 555, 623
Mox20I	TGGCCA	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	351
MseI	TTAA	2 cut(s)	135, 366
Msp20I	TGGCCA	1 cut(s)	351
MspI	CCGG	2 cut(s)	269, 325
MspR9I	CCNGG	4 cut(s)	326, 359, 405, 589
MvaI	CCWGG	3 cut(s)	359, 405, 589
MwoI	GCNNNNNNNGC	2 cut(s)	368, 422
NciI	CCSGG	1 cut(s)	326
NdeI	CATATG	2 cut(s)	72, 523
NdeII	GATC	3 cut(s)	286, 478, 742
NlaIII	CATG	7 cut(s)	56, 98, 203, 225, 487, 551, 719
NlaIV	GGNNCC	3 cut(s)	323, 387, 577
NmuCI	GTSAC	1 cut(s)	83
NspI	RCATGY	1 cut(s)	56
PagI	TCATGA	1 cut(s)	199
PciI	ACATGT	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	5 cut(s)	220, 424, 516, 553, 586
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
PpuMI	RGGWCCY	1 cut(s)	576
PscI	ACATGT	1 cut(s)	52
PshAI	GACNNNNGTC	1 cut(s)	13
Psp5II	RGGWCCY	1 cut(s)	576
Psp6I	CCWGG	3 cut(s)	357, 403, 587
PspGI	CCWGG	3 cut(s)	357, 403, 587
PspN4I	GGNNCC	3 cut(s)	323, 387, 577
PspPI	GGNCC	1 cut(s)	576
PspPPI	RGGWCCY	1 cut(s)	576
PstI	CTGCAG	1 cut(s)	556
PstNI	CAGNNNCTG	2 cut(s)	560, 617
PsuI	RGATCY	2 cut(s)	286, 742
RsaI	GTAC	3 cut(s)	267, 323, 655
RsaNI	GTAC	3 cut(s)	266, 322, 654
SaqAI	TTAA	2 cut(s)	135, 366
SatI	GCNGC	5 cut(s)	219, 423, 515, 552, 585
Sau3AI	GATC	3 cut(s)	286, 478, 742
Sau96I	GGNCC	1 cut(s)	576
ScaI	AGTACT	1 cut(s)	655
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	4 cut(s)	326, 359, 405, 589
SduI	GDGCHC	1 cut(s)	606
SetI	ASST	9 cut(s)	48, 108, 192, 196, 234, 391, 453, 547, 581
SfaNI	GCATC	1 cut(s)	390
SfcI	CTRYAG	1 cut(s)	552
SinI	GGWCC	1 cut(s)	576
Sse9I	AATT	7 cut(s)	79, 89, 276, 564, 696, 722, 762
SsiI	CCGC	2 cut(s)	319, 514
SspI	AATATT	2 cut(s)	139, 257
SspMI	CTAG	2 cut(s)	35, 212
StyD4I	CCNGG	4 cut(s)	324, 357, 403, 587
TaqI	TCGA	1 cut(s)	727
TasI	AATT	7 cut(s)	79, 89, 276, 564, 696, 722, 762
TatI	WGTACW	1 cut(s)	653
TauI	GCSGC	1 cut(s)	517
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	2 cut(s)	135, 366
Tru9I	TTAA	2 cut(s)	135, 366
TscAI	CASTG	2 cut(s)	618, 682
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	4 cut(s)	218, 422, 551, 584
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	4 cut(s)	83, 107, 226, 450
TspRI	CASTG	2 cut(s)	618, 682
VpaK11BI	GGWCC	1 cut(s)	576
XapI	RAATTY	4 cut(s)	89, 564, 722, 762
XceI	RCATGY	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	334
XspI	CTAG	2 cut(s)	35, 212
ZrmI	AGTACT	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.