Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000251.1

Orthogroup ID

OG0002739

Physical Location & Seq

Genomic Coordinates Reverse (-)

59902 .. 63270

Gene Structure 3369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000251.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atgtggactactccgaacatatggctaattgtgacaaatttcatgtctggaagctttatattcttcatttatcttgctgttctaatattgggtggccatccccaggcagttaatgccgtaaatgatgaagcacctacttctctgatgcctggattgtgtgcaaaggctgccttttcttatgaaaatagcagagacctttggaggcagaaggagacacagaatgatctcatggtaaagaaagaccaggatgctcgcctggatattggttcagcttcagctcttgctaaaagggttgtcaatggcttcaagagttcctctggtaatagtgctatagatcctatatcctcccctaggatcaatctaatctttcaacagcaggttgtggggccaattgtctttcgagcggattcaagggtttcactagcctctttgcctgggaaacgtacgtgcgggcgacgccggactgggtcgaggtcactatcgtggacgtcgaccgaagagattcggcgatctgaggcgagcttcggcgatcttcggtggacgatcttcggtgatctgagacaagctgaggcgttgcagatcgatctgatgtcagacgaaggcggtctgggacggaagacgaggccggtctggactgaaggtcagggagaagggcgccggcgatctgagacggaccggagcgatctgtcttttgctgaagatgaggccgagcgaacgactgaagaggacgtcgaacgacgtcgtttcaaggctccaaagaattggcttttaacccaattgtttttcctcagattgggaaaaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3769

Protein Analysis

268

Amino Acids

30.13

Weight (kDa)

9.38

Isoelectric Point (pI)

61.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44640
fragaria_vesca	FvH4_7g08780 FvH4_7g08780 FvH4_7g08780 FvH4_7g08800
malus_domestica	MD02G1224900.v1.1 MD07G1088800.v1.1 MD07G1089000.v1.1 MD07G1089100.v1.1 MD07G1089700.v1.1 MD07G1089800.v1.1 MD07G1089900.v1.1 MD07G1090600.v1.1
prunus_persica	Prupe.2G115700_v2.0.a1 Prupe.2G115700_v2.0.a1
pyrus_communis	pycom02g17920 pycom02g17930 pycom02g19310 pycom07g07130
rosa_chinensis	RchiOBHm_Chr1g0344071
rosa_laevigata	RLG00000028928
rosa_multiflora	Rmu_sc0000251.1_g000013 Rmu_sc0000251.1_g000017 Rmu_sc0002276.1_g000004 Rmu_sc0002276.1_g000007 Rmu_sc0002297.1_g000007 Rmu_sc0002297.1_g000013 Rmu_ssc0000434.1_g000008
rosa_roxburghii	Rroxscaffold_4G00310080
rosa_rugosa	Rorug01G0171400 Rorug01G0171500 Rorug05G0553700 Rorug05G0553800
rosa_samantha	Rh1AG188100 Rh1BG154200 Rh1CG173600 Rh1DG186300 Rh5BG101000
rosa_wichuraiana	Rw1G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	491, 732, 742
Acc36I	ACCTGC	1 cut(s)	367
AccB1I	GGYRCC	1 cut(s)	654
AccBSI	CCGCTC	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	491
AciI	CCGC	3 cut(s)	404, 450, 603
AclWI	GGATC	2 cut(s)	329, 362
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	37
AcuI	CTGAAG	4 cut(s)	258, 657, 717, 741
AcyI	GRCGYC	5 cut(s)	457, 488, 655, 729, 739
AfaI	GTAC	1 cut(s)	445
AfiI	CCNNNNNNNGG	3 cut(s)	103, 351, 793
AgsI	TTSAA	4 cut(s)	307, 371, 411, 748
AhdI	GACNNNNNGTC	1 cut(s)	639
AjnI	CCWGG	5 cut(s)	102, 148, 243, 255, 433
AleI	CACNNNNGTG	1 cut(s)	481
AluBI	AGCT	6 cut(s)	54, 272, 278, 522, 566, 804
AluI	AGCT	6 cut(s)	54, 272, 278, 522, 566, 804
Alw26I	GTCTC	4 cut(s)	186, 206, 553, 662
AlwI	GGATC	2 cut(s)	329, 362
AoxI	GGCC	4 cut(s)	94, 386, 623, 705
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	1 cut(s)	37
ArsI	GACNNNNNNTTYG	2 cut(s)	29, 61
Asp700I	GAANNNNTTC	1 cut(s)	501
AspA2I	CCTAGG	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	657
AspS9I	GGNCC	2 cut(s)	386, 673
AsuHPI	GGTGA	1 cut(s)	563
AvaII	GGWCC	1 cut(s)	673
AvrII	CCTAGG	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	96
BanI	GGYRCC	1 cut(s)	654
BbsI	GAAGAC	1 cut(s)	623
BbvCI	CCTCAGC	1 cut(s)	567
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	1 cut(s)	105
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	5 cut(s)	104, 150, 245, 257, 435
BcoDI	GTCTC	4 cut(s)	186, 206, 553, 662
BfaI	CTAG	2 cut(s)	351, 422
BfmI	CTRYAG	1 cut(s)	330
BfoI	RGCGCY	1 cut(s)	658
BfuAI	ACCTGC	1 cut(s)	367
BisI	GCNGC	1 cut(s)	168
BlnI	CCTAGG	1 cut(s)	350
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	5 cut(s)	104, 150, 245, 257, 435
Bme18I	GGWCC	1 cut(s)	673
BmeRI	GACNNNNNGTC	1 cut(s)	639
BmgT120I	GGNCC	2 cut(s)	386, 673
BmiI	GGNNCC	3 cut(s)	387, 656, 753
BmrFI	CCNGG	5 cut(s)	104, 150, 245, 257, 435
BmrI	ACTGGG	1 cut(s)	474
BmsI	GCATC	2 cut(s)	135, 238
BmuI	ACTGGG	1 cut(s)	474
BpiI	GAAGAC	1 cut(s)	623
Bpu10I	CCTNAGC	1 cut(s)	567
Bsa29I	ATCGAT	1 cut(s)	582
BsaAI	YACGTR	1 cut(s)	447
BsaHI	GRCGYC	5 cut(s)	457, 488, 655, 729, 739
BsaI	GGTCTC	1 cut(s)	186
BsaJI	CCNNGG	3 cut(s)	102, 350, 434
BsaWI	WCCGGW	1 cut(s)	675
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 351, 793
Bse118I	RCCGGY	2 cut(s)	625, 657
Bse1I	ACTGG	1 cut(s)	469
BseBI	CCWGG	5 cut(s)	104, 150, 245, 257, 435
BseCI	ATCGAT	1 cut(s)	582
BseDI	CCNNGG	3 cut(s)	102, 350, 434
BseGI	GGATG	2 cut(s)	97, 253
BseLI	CCNNNNNNNGG	3 cut(s)	103, 351, 793
BseMII	CTCAG	5 cut(s)	504, 548, 558, 657, 802
BseNI	ACTGG	1 cut(s)	469
BseXI	GCAGC	1 cut(s)	154
Bsh1285I	CGRYCG	1 cut(s)	495
BshFI	GGCC	4 cut(s)	96, 388, 625, 707
BshNI	GGYRCC	1 cut(s)	654
BshVI	ATCGAT	1 cut(s)	582
BsiEI	CGRYCG	1 cut(s)	495
BsiSI	CCGG	4 cut(s)	460, 626, 658, 676
BsiWI	CGTACG	1 cut(s)	443
BslFI	GGGAC	1 cut(s)	624
BslI	CCNNNNNNNGG	3 cut(s)	103, 351, 793
BsmAI	GTCTC	4 cut(s)	186, 206, 553, 662
BsmBI	CGTCTC	1 cut(s)	662
BsmFI	GGGAC	1 cut(s)	624
BsnI	GGCC	4 cut(s)	96, 388, 625, 707
Bso31I	GGTCTC	1 cut(s)	186
BspACI	CCGC	3 cut(s)	404, 450, 603
BspANI	GGCC	4 cut(s)	96, 388, 625, 707
BspCNI	CTCAG	5 cut(s)	505, 549, 559, 658, 801
BspDI	ATCGAT	1 cut(s)	582
BspLI	GGNNCC	3 cut(s)	387, 656, 753
BspMI	ACCTGC	1 cut(s)	367
BspPI	GGATC	2 cut(s)	329, 362
BspT107I	GGYRCC	1 cut(s)	654
BspTNI	GGTCTC	1 cut(s)	186
BsrBI	CCGCTC	1 cut(s)	404
BsrFI	RCCGGY	2 cut(s)	625, 657
BsrI	ACTGG	1 cut(s)	469
BssAI	RCCGGY	2 cut(s)	625, 657
BssECI	CCNNGG	3 cut(s)	102, 350, 434
BssNI	GRCGYC	5 cut(s)	457, 488, 655, 729, 739
BssT1I	CCWWGG	1 cut(s)	350
Bst2UI	CCWGG	5 cut(s)	104, 150, 245, 257, 435
Bst6I	CTCTTC	2 cut(s)	492, 717
BstACI	GRCGYC	5 cut(s)	457, 488, 655, 729, 739
BstAPI	GCANNNNNTGC	2 cut(s)	113, 167
BstBAI	YACGTR	1 cut(s)	447
BstC8I	GCNNGC	4 cut(s)	253, 452, 520, 659
BstDEI	CTNAG	5 cut(s)	513, 557, 567, 666, 788
BstENI	CCTNNNNNAGG	1 cut(s)	349
BstF5I	GGATG	2 cut(s)	97, 253
BstH2I	RGCGCY	1 cut(s)	658
BstHHI	GCGC	1 cut(s)	657
BstMAI	GTCTC	4 cut(s)	186, 206, 553, 662
BstMCI	CGRYCG	1 cut(s)	495
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 167, 456
BstNI	CCWGG	5 cut(s)	104, 150, 245, 257, 435
BstSCI	CCNGG	5 cut(s)	102, 148, 243, 255, 433
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	154
BstV2I	GAAGAC	1 cut(s)	623
BstX2I	RGATCY	1 cut(s)	334
BstXI	CCANNNNNNTGG	1 cut(s)	762
BstYI	RGATCY	1 cut(s)	334
Bsu15I	ATCGAT	1 cut(s)	582
BsuRI	GGCC	4 cut(s)	96, 388, 625, 707
BsuTUI	ATCGAT	1 cut(s)	582
BtsCI	GGATG	2 cut(s)	97, 253
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	4 cut(s)	253, 452, 520, 659
CfoI	GCGC	1 cut(s)	657
Cfr10I	RCCGGY	2 cut(s)	625, 657
Cfr13I	GGNCC	2 cut(s)	386, 673
ClaI	ATCGAT	1 cut(s)	582
CpoI	CGGWCCG	1 cut(s)	673
CseI	GACGC	1 cut(s)	465
Csp6I	GTAC	1 cut(s)	444
CspI	CGGWCCG	1 cut(s)	673
CviAII	CATG	2 cut(s)	43, 229
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	5 cut(s)	513, 557, 567, 666, 788
DinI	GGCGCC	1 cut(s)	656
DriI	GACNNNNNGTC	1 cut(s)	639
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	2 cut(s)	492, 717
Eam1105I	GACNNNNNGTC	1 cut(s)	639
EarI	CTCTTC	2 cut(s)	492, 717
Eco130I	CCWWGG	1 cut(s)	350
Eco31I	GGTCTC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	673
Eco57I	CTGAAG	4 cut(s)	258, 657, 717, 741
EcoNI	CCTNNNNNAGG	1 cut(s)	349
EcoRII	CCWGG	5 cut(s)	102, 148, 243, 255, 433
EcoT14I	CCWWGG	1 cut(s)	350
EgeI	GGCGCC	1 cut(s)	656
EheI	GGCGCC	1 cut(s)	656
ErhI	CCWWGG	1 cut(s)	350
Esp3I	CGTCTC	1 cut(s)	662
FaeI	CATG	2 cut(s)	46, 232
FaiI	YATR	8 cut(s)	20, 22, 44, 59, 180, 230, 332, 341
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FaqI	GGGAC	1 cut(s)	624
FatI	CATG	2 cut(s)	42, 228
FauI	CCCGC	1 cut(s)	443
FauNDI	CATATG	1 cut(s)	20
FblI	GTMKAC	1 cut(s)	491
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	2 cut(s)	84, 260
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	2 cut(s)	351, 422
GlaI	GCGC	1 cut(s)	656
GluI	GCNGC	1 cut(s)	168
HaeII	RGCGCY	1 cut(s)	658
HaeIII	GGCC	4 cut(s)	96, 388, 625, 707
HapII	CCGG	4 cut(s)	460, 626, 658, 676
HgaI	GACGC	1 cut(s)	465
HhaI	GCGC	1 cut(s)	657
Hin1I	GRCGYC	5 cut(s)	457, 488, 655, 729, 739
Hin1II	CATG	2 cut(s)	46, 232
Hin6I	GCGC	1 cut(s)	655
HinP1I	GCGC	1 cut(s)	655
HincII	GTYRAC	1 cut(s)	492
HindII	GTYRAC	1 cut(s)	492
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	2 cut(s)	407, 502
HpaII	CCGG	4 cut(s)	460, 626, 658, 676
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	4 cut(s)	6, 486, 492, 540
Hpy188I	TCNGA	8 cut(s)	15, 144, 514, 558, 588, 595, 667, 791
Hpy188III	TCNNGA	3 cut(s)	48, 307, 631
Hpy8I	GTNNAC	4 cut(s)	6, 486, 492, 540
Hpy99I	CGWCG	5 cut(s)	459, 493, 734, 741, 744
HpyAV	CCTTC	4 cut(s)	202, 593, 632, 644
HpyCH4IV	ACGT	5 cut(s)	442, 446, 488, 729, 739
HpyCH4V	TGCA	2 cut(s)	161, 577
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 167, 456
HpyF3I	CTNAG	5 cut(s)	513, 557, 567, 666, 788
HpySE526I	ACGT	5 cut(s)	442, 446, 488, 729, 739
Hsp92I	GRCGYC	5 cut(s)	457, 488, 655, 729, 739
Hsp92II	CATG	2 cut(s)	46, 232
HspAI	GCGC	1 cut(s)	655
KasI	GGCGCC	1 cut(s)	654
KroI	GCCGGC	1 cut(s)	657
KroNI	GCCGGC	1 cut(s)	659
LmnI	GCTCC	2 cut(s)	678, 757
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	2 cut(s)	135, 238
MaeI	CTAG	2 cut(s)	351, 422
MaeII	ACGT	5 cut(s)	442, 446, 488, 729, 739
MaeIII	GTNAC	2 cut(s)	31, 474
MbiI	CCGCTC	1 cut(s)	404
MboII	GAAGA	7 cut(s)	55, 509, 524, 538, 628, 710, 734
MfeI	CAATTG	2 cut(s)	390, 776
MflI	RGATCY	1 cut(s)	334
MlsI	TGGCCA	1 cut(s)	96
MluCI	AATT	5 cut(s)	27, 37, 390, 760, 776
MluNI	TGGCCA	1 cut(s)	96
Mly113I	GGCGCC	1 cut(s)	655
Mox20I	TGGCCA	1 cut(s)	96
MreI	CGCCGGCG	1 cut(s)	657
MroNI	GCCGGC	1 cut(s)	657
MroXI	GAANNNNTTC	1 cut(s)	501
MscI	TGGCCA	1 cut(s)	96
MseI	TTAA	2 cut(s)	111, 770
MslI	CAYNNNNRTG	1 cut(s)	481
Msp20I	TGGCCA	1 cut(s)	96
MspI	CCGG	4 cut(s)	460, 626, 658, 676
MspR9I	CCNGG	5 cut(s)	104, 150, 245, 257, 435
MunI	CAATTG	2 cut(s)	390, 776
MvaI	CCWGG	5 cut(s)	104, 150, 245, 257, 435
MwoI	GCNNNNNNNGC	3 cut(s)	113, 167, 456
NaeI	GCCGGC	1 cut(s)	659
NarI	GGCGCC	1 cut(s)	655
NdeI	CATATG	1 cut(s)	20
NgoMIV	GCCGGC	1 cut(s)	657
NlaIII	CATG	2 cut(s)	46, 232
NlaIV	GGNNCC	3 cut(s)	387, 656, 753
NmeAIII	GCCGAG	1 cut(s)	733
NmuCI	GTSAC	2 cut(s)	31, 474
OliI	CACNNNNGTG	1 cut(s)	481
PcsI	WCGNNNNNNNCGW	1 cut(s)	488
PdiI	GCCGGC	1 cut(s)	659
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	407, 502
Pfl23II	CGTACG	1 cut(s)	443
PflFI	GACNNNGTC	1 cut(s)	466
PkrI	GCNGC	1 cut(s)	169
PluTI	GGCGCC	1 cut(s)	658
Ppu21I	YACGTR	1 cut(s)	447
Psp6I	CCWGG	5 cut(s)	102, 148, 243, 255, 433
PspGI	CCWGG	5 cut(s)	102, 148, 243, 255, 433
PspLI	CGTACG	1 cut(s)	443
PspN4I	GGNNCC	3 cut(s)	387, 656, 753
PspPI	GGNCC	2 cut(s)	386, 673
PsuI	RGATCY	1 cut(s)	334
PsyI	GACNNNGTC	1 cut(s)	466
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
RseI	CAYNNNNRTG	1 cut(s)	481
Rsr2I	CGGWCCG	1 cut(s)	673
RsrII	CGGWCCG	1 cut(s)	673
SalI	GTCGAC	1 cut(s)	490
SaqAI	TTAA	2 cut(s)	111, 770
SatI	GCNGC	1 cut(s)	168
Sau96I	GGNCC	2 cut(s)	386, 673
ScrFI	CCNGG	5 cut(s)	104, 150, 245, 257, 435
SfaNI	GCATC	2 cut(s)	135, 238
SfcI	CTRYAG	1 cut(s)	330
SfoI	GGCGCC	1 cut(s)	656
SgrAI	CRCCGGYG	1 cut(s)	657
SinI	GGWCC	1 cut(s)	673
SmiMI	CAYNNNNRTG	1 cut(s)	481
Sse9I	AATT	5 cut(s)	27, 37, 390, 760, 776
SsiI	CCGC	3 cut(s)	404, 450, 603
SspDI	GGCGCC	1 cut(s)	654
SspI	AATATT	1 cut(s)	87
SspMI	CTAG	2 cut(s)	351, 422
StyD4I	CCNGG	5 cut(s)	102, 148, 243, 255, 433
StyI	CCWWGG	1 cut(s)	350
TaiI	ACGT	5 cut(s)	445, 449, 491, 732, 742
TaqI	TCGA	5 cut(s)	400, 470, 491, 582, 732
TaqII	GACCGA	1 cut(s)	509
TasI	AATT	5 cut(s)	27, 37, 390, 760, 776
TfiI	GAWTC	2 cut(s)	407, 502
Tru1I	TTAA	2 cut(s)	111, 770
Tru9I	TTAA	2 cut(s)	111, 770
TseFI	GTSAC	2 cut(s)	31, 474
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	2 cut(s)	31, 474
TspDTI	ATGAA	4 cut(s)	31, 55, 141, 195
TspGWI	ACGGA	2 cut(s)	628, 686
Tth111I	GACNNNGTC	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	673
XagI	CCTNNNNNAGG	1 cut(s)	349
XapI	RAATTY	1 cut(s)	37
XmaJI	CCTAGG	1 cut(s)	350
XmiI	GTMKAC	1 cut(s)	491
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	2 cut(s)	351, 422
ZraI	GACGTC	3 cut(s)	489, 730, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.