Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000251.1

Orthogroup ID

OG0002739

Physical Location & Seq

Genomic Coordinates Reverse (-)

94251 .. 94784

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000251.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgtggactactccgaacatatggctaattgtgacaaatttcatgtctggaagctttatattcttcatttatcttgctgttctaatattggggtatgtgctactgaacgatttttctcaacttctaagatgtttacagctaccttatcatgacatcacattagaggttgcatggcctgagctgttcattgaccataaaggacaatattgggatgtaccagagtcaatttccttagatctgtcatcacttgtttctgaatctggattgcggtaccgggttggtatacataaaaatagtggccatccccaggcagttaatgccgtaaatcatgaagcacctacttctctgatgcctggattgtgtgcaaaggctgccttttcttatgaaaatagcagagacctttggaggcagaaggggacacagaatgatctcatggtaaagaaagaccagggttggttttggcggccatcatatgatgtgcatctcaaagaacctcatgctgcagtatctcactactacatatatgacctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3769

Protein Analysis

177

Amino Acids

20.48

Weight (kDa)

6.02

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44640
fragaria_vesca	FvH4_7g08780 FvH4_7g08780 FvH4_7g08780 FvH4_7g08800
malus_domestica	MD02G1224900.v1.1 MD07G1088800.v1.1 MD07G1089000.v1.1 MD07G1089100.v1.1 MD07G1089700.v1.1 MD07G1089800.v1.1 MD07G1089900.v1.1 MD07G1090600.v1.1
prunus_persica	Prupe.2G115700_v2.0.a1 Prupe.2G115700_v2.0.a1
pyrus_communis	pycom02g17920 pycom02g17930 pycom02g19310 pycom07g07130
rosa_chinensis	RchiOBHm_Chr1g0344071
rosa_laevigata	RLG00000028928
rosa_multiflora	Rmu_sc0000251.1_g000013 Rmu_sc0000251.1_g000017 Rmu_sc0002276.1_g000004 Rmu_sc0002276.1_g000007 Rmu_sc0002297.1_g000007 Rmu_sc0002297.1_g000013 Rmu_ssc0000434.1_g000008
rosa_roxburghii	Rroxscaffold_4G00310080
rosa_rugosa	Rorug01G0171400 Rorug01G0171500 Rorug05G0553700 Rorug05G0553800
rosa_samantha	Rh1AG188100 Rh1BG154200 Rh1CG173600 Rh1DG186300 Rh5BG101000
rosa_wichuraiana	Rw1G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	270
AccB1I	GGYRCC	1 cut(s)	270
AccI	GTMKAC	1 cut(s)	283
AciI	CCGC	2 cut(s)	268, 463
AcoI	YGGCCR	2 cut(s)	298, 464
AcsI	RAATTY	1 cut(s)	37
AfaI	GTAC	2 cut(s)	216, 272
AfiI	CCNNNNNNNGG	1 cut(s)	307
AjnI	CCWGG	3 cut(s)	306, 352, 447
AluBI	AGCT	3 cut(s)	54, 139, 181
AluI	AGCT	3 cut(s)	54, 139, 181
Alw26I	GTCTC	1 cut(s)	390
AoxI	GGCC	3 cut(s)	173, 298, 464
ApeKI	GCWGC	2 cut(s)	371, 500
ApoI	RAATTY	1 cut(s)	37
ArsI	GACNNNNNNTTYG	2 cut(s)	29, 61
Asp718I	GGTACC	1 cut(s)	270
AsuC2I	CCSGG	1 cut(s)	275
BalI	TGGCCA	1 cut(s)	300
BanI	GGYRCC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	358, 487
BccI	CCATC	2 cut(s)	309, 475
BceAI	ACGGC	1 cut(s)	305
BciT130I	CCWGG	3 cut(s)	308, 354, 449
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	501
BglII	AGATCT	1 cut(s)	235
BisI	GCNGC	3 cut(s)	372, 464, 501
BlsI	GCNGC	3 cut(s)	373, 465, 502
Bme1390I	CCNGG	4 cut(s)	275, 308, 354, 449
BmiI	GGNNCC	1 cut(s)	272
BmrFI	CCNGG	4 cut(s)	275, 308, 354, 449
BmsI	GCATC	2 cut(s)	339, 490
Bpu10I	CCTNAGC	1 cut(s)	177
BpuMI	CCSGG	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	480
BsaI	GGTCTC	1 cut(s)	390
BsaJI	CCNNGG	2 cut(s)	306, 448
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	3 cut(s)	308, 354, 449
BseDI	CCNNGG	2 cut(s)	306, 448
BseGI	GGATG	2 cut(s)	217, 301
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	358, 487
BshFI	GGCC	3 cut(s)	175, 300, 466
BshNI	GGYRCC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	274
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	390
BsmFI	GGGAC	1 cut(s)	430
BsnI	GGCC	3 cut(s)	175, 300, 466
Bso31I	GGTCTC	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	235, 427
BspACI	CCGC	2 cut(s)	268, 463
BspANI	GGCC	3 cut(s)	175, 300, 466
BspCNI	CTCAG	1 cut(s)	169
BspHI	TCATGA	2 cut(s)	148, 328
BspLI	GGNNCC	1 cut(s)	272
BspMAI	CTGCAG	1 cut(s)	505
BspT107I	GGYRCC	1 cut(s)	270
BspTNI	GGTCTC	1 cut(s)	390
BssECI	CCNNGG	2 cut(s)	306, 448
BssMI	GATC	2 cut(s)	235, 427
BssNAI	GTATAC	1 cut(s)	284
Bst1107I	GTATAC	1 cut(s)	284
Bst2UI	CCWGG	3 cut(s)	308, 354, 449
BstAPI	GCANNNNNTGC	2 cut(s)	317, 371
BstDEI	CTNAG	3 cut(s)	125, 177, 232
BstF5I	GGATG	2 cut(s)	217, 301
BstKTI	GATC	2 cut(s)	238, 430
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	2 cut(s)	235, 427
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 371
BstNI	CCWGG	3 cut(s)	308, 354, 449
BstSCI	CCNGG	4 cut(s)	273, 306, 352, 447
BstSFI	CTRYAG	1 cut(s)	501
BstV1I	GCAGC	2 cut(s)	358, 487
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BstZ17I	GTATAC	1 cut(s)	284
BsuRI	GGCC	3 cut(s)	175, 300, 466
BtsCI	GGATG	2 cut(s)	217, 301
CciI	TCATGA	2 cut(s)	148, 328
Csp6I	GTAC	2 cut(s)	215, 271
CviAII	CATG	6 cut(s)	43, 149, 171, 329, 433, 497
CviJI	RGCY	8 cut(s)	25, 54, 139, 175, 181, 300, 371, 466
CviKI_1	RGCY	8 cut(s)	25, 54, 139, 175, 181, 300, 371, 466
CviQI	GTAC	2 cut(s)	215, 271
DdeI	CTNAG	3 cut(s)	125, 177, 232
DpnI	GATC	2 cut(s)	237, 429
DpnII	GATC	2 cut(s)	235, 427
EaeI	YGGCCR	2 cut(s)	298, 464
Eco31I	GGTCTC	1 cut(s)	390
EcoRII	CCWGG	3 cut(s)	306, 352, 447
FaeI	CATG	6 cut(s)	46, 152, 174, 332, 436, 500
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	6 cut(s)	42, 148, 170, 328, 432, 496
FauNDI	CATATG	2 cut(s)	20, 472
FblI	GTMKAC	1 cut(s)	283
Fnu4HI	GCNGC	3 cut(s)	372, 464, 501
FokI	GGATG	2 cut(s)	224, 288
Fsp4HI	GCNGC	3 cut(s)	372, 464, 501
GluI	GCNGC	3 cut(s)	372, 464, 501
HaeIII	GGCC	3 cut(s)	175, 300, 466
HapII	CCGG	1 cut(s)	274
Hin1II	CATG	6 cut(s)	46, 152, 174, 332, 436, 500
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	2 cut(s)	221, 257
HpaII	CCGG	1 cut(s)	274
Hpy166II	GTNNAC	3 cut(s)	6, 134, 284
Hpy188I	TCNGA	3 cut(s)	15, 256, 348
Hpy188III	TCNNGA	4 cut(s)	48, 149, 261, 329
Hpy8I	GTNNAC	3 cut(s)	6, 134, 284
HpyAV	CCTTC	1 cut(s)	406
HpyCH4V	TGCA	4 cut(s)	170, 365, 481, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 371
HpyF3I	CTNAG	3 cut(s)	125, 177, 232
Hsp92II	CATG	6 cut(s)	46, 152, 174, 332, 436, 500
KpnI	GGTACC	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	235, 427
Lsp1109I	GCAGC	2 cut(s)	358, 487
LweI	GCATC	2 cut(s)	339, 490
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	2 cut(s)	237, 429
MboI	GATC	2 cut(s)	235, 427
MboII	GAAGA	1 cut(s)	55
MflI	RGATCY	1 cut(s)	235
MlsI	TGGCCA	1 cut(s)	300
MluCI	AATT	3 cut(s)	27, 37, 225
MluNI	TGGCCA	1 cut(s)	300
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	3 cut(s)	157, 399, 504
Mox20I	TGGCCA	1 cut(s)	300
MscI	TGGCCA	1 cut(s)	300
MseI	TTAA	2 cut(s)	315, 532
Msp20I	TGGCCA	1 cut(s)	300
MspI	CCGG	1 cut(s)	274
MspR9I	CCNGG	4 cut(s)	275, 308, 354, 449
MvaI	CCWGG	3 cut(s)	308, 354, 449
MwoI	GCNNNNNNNGC	2 cut(s)	317, 371
NciI	CCSGG	1 cut(s)	275
NdeI	CATATG	2 cut(s)	20, 472
NdeII	GATC	2 cut(s)	235, 427
NlaIII	CATG	6 cut(s)	46, 152, 174, 332, 436, 500
NlaIV	GGNNCC	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	31
PagI	TCATGA	2 cut(s)	148, 328
PfeI	GAWTC	1 cut(s)	257
PkrI	GCNGC	3 cut(s)	373, 465, 502
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
Psp6I	CCWGG	3 cut(s)	306, 352, 447
PspGI	CCWGG	3 cut(s)	306, 352, 447
PspN4I	GGNNCC	1 cut(s)	272
PstI	CTGCAG	1 cut(s)	505
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	2 cut(s)	216, 272
RsaNI	GTAC	2 cut(s)	215, 271
SaqAI	TTAA	2 cut(s)	315, 532
SatI	GCNGC	3 cut(s)	372, 464, 501
Sau3AI	GATC	2 cut(s)	235, 427
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	4 cut(s)	275, 308, 354, 449
SetI	ASST	9 cut(s)	56, 141, 145, 168, 183, 340, 402, 496, 531
SfaNI	GCATC	2 cut(s)	339, 490
SfcI	CTRYAG	1 cut(s)	501
Sse9I	AATT	3 cut(s)	27, 37, 225
SsiI	CCGC	2 cut(s)	268, 463
SspI	AATATT	2 cut(s)	87, 206
StyD4I	CCNGG	4 cut(s)	273, 306, 352, 447
TasI	AATT	3 cut(s)	27, 37, 225
TauI	GCSGC	1 cut(s)	466
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	2 cut(s)	315, 532
Tru9I	TTAA	2 cut(s)	315, 532
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	2 cut(s)	371, 500
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	5 cut(s)	31, 55, 175, 345, 399
XapI	RAATTY	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.