Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002297.1

Orthogroup ID

OG0002739

Physical Location & Seq

Genomic Coordinates Forward (+)

23619 .. 25612

Gene Structure 1994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002297.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atgtggattactctgaacatatggctaattgtgacaaatttcatgtctggaagctttatattcttcatttatcttgctgttttaatattggggtatgtgctactgaacgatttttctcaacttctaagatgtttacagctaccttatcatgacatcacactagaggctgcatggcctgagctgttcattgaccataaaggacaatattgggatgtaccggagtcaatttccttagatctgtcatcacttgtttctgaatctgggttgcggtaccgggttggtatacataaaaatagtggccatccccaggcagttaatgccgtaaatgatgaggcacctacttctctgatgcctggattgtgtgcaaaggctgccttttcttatgaaaagagcagagacctttggaggcagaaggagacacagaatgatctcatggtaaagaaagacaggggttggttttggcggccatcatatgatgtgcgtctcaaagaacctcatgctgcagtatctggaatttttggtgggagctttgcagcctggtttcaggatgggcacagcccagtagctgttgaacttagaggagatgggaacacttcttcaagtactaagaagagaagtcctttcagtgctgatttttttggttcaatttgctatcgcttccagcatgggaaatttcgagagctttatggggatcttaccaggatagatgcccacctggatattggttcagcttcagctcttgctaaaagggttgtgaatggcttcaagagttcctctgctaatagtgctatagatcctatgtcctcccctaggatcaatctaatctttcaacagcaggttgtggggccaattgtctttcgagtggattcaagggtttcactagcctctttgcctgggaaacgtggtccacatattgaggatttcatttacagcttgagctactccttgaggcttttacagtcaggcaaggttgttgcttggtattccccaaaaagaaaagaaggaatgattgagttgcgggtgtttgagttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3769

Protein Analysis

344

Amino Acids

38.85

Weight (kDa)

8.98

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44640
fragaria_vesca	FvH4_7g08780 FvH4_7g08780 FvH4_7g08780 FvH4_7g08800
malus_domestica	MD02G1224900.v1.1 MD07G1088800.v1.1 MD07G1089000.v1.1 MD07G1089100.v1.1 MD07G1089700.v1.1 MD07G1089800.v1.1 MD07G1089900.v1.1 MD07G1090600.v1.1
prunus_persica	Prupe.2G115700_v2.0.a1 Prupe.2G115700_v2.0.a1
pyrus_communis	pycom02g17920 pycom02g17930 pycom02g19310 pycom07g07130
rosa_chinensis	RchiOBHm_Chr1g0344071
rosa_laevigata	RLG00000028928
rosa_multiflora	Rmu_sc0000251.1_g000013 Rmu_sc0000251.1_g000017 Rmu_sc0002276.1_g000004 Rmu_sc0002276.1_g000007 Rmu_sc0002297.1_g000007 Rmu_sc0002297.1_g000013 Rmu_ssc0000434.1_g000008
rosa_roxburghii	Rroxscaffold_4G00310080
rosa_rugosa	Rorug01G0171400 Rorug01G0171500 Rorug05G0553700 Rorug05G0553800
rosa_samantha	Rh1AG188100 Rh1BG154200 Rh1CG173600 Rh1DG186300 Rh5BG101000
rosa_wichuraiana	Rw1G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	826
Acc65I	GGTACC	1 cut(s)	270
AccB1I	GGYRCC	2 cut(s)	270, 334
AccI	GTMKAC	1 cut(s)	283
AciI	CCGC	3 cut(s)	268, 463, 1018
AclWI	GGATC	3 cut(s)	699, 788, 821
AcoI	YGGCCR	2 cut(s)	298, 464
AcsI	RAATTY	3 cut(s)	37, 513, 671
AcuI	CTGAAG	1 cut(s)	717
AfaI	GTAC	3 cut(s)	216, 272, 604
AfiI	CCNNNNNNNGG	2 cut(s)	307, 810
AgsI	TTSAA	6 cut(s)	572, 600, 645, 766, 830, 870
AjnI	CCWGG	6 cut(s)	306, 352, 536, 698, 714, 892
Alw26I	GTCTC	3 cut(s)	390, 410, 488
AlwI	GGATC	3 cut(s)	699, 788, 821
AlwNI	CAGNNNCTG	2 cut(s)	509, 566
AoxI	GGCC	4 cut(s)	173, 298, 464, 845
ApeKI	GCWGC	4 cut(s)	167, 371, 500, 533
ApoI	RAATTY	3 cut(s)	37, 513, 671
ArsI	GACNNNNNNTTYG	2 cut(s)	29, 61
Asp700I	GAANNNNTTC	1 cut(s)	761
Asp718I	GGTACC	1 cut(s)	270
AspA2I	CCTAGG	1 cut(s)	809
AspS9I	GGNCC	2 cut(s)	845, 905
AsuC2I	CCSGG	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	905
AvrII	CCTAGG	1 cut(s)	809
BaeGI	GKGCMC	1 cut(s)	555
BalI	TGGCCA	1 cut(s)	300
BanI	GGYRCC	2 cut(s)	270, 334
BbvI	GCAGC	4 cut(s)	154, 358, 487, 545
BccI	CCATC	4 cut(s)	309, 475, 542, 578
BceAI	ACGGC	1 cut(s)	305
BciT130I	CCWGG	6 cut(s)	308, 354, 538, 700, 716, 894
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	3 cut(s)	390, 410, 488
BfaI	CTAG	3 cut(s)	161, 810, 881
BfmI	CTRYAG	2 cut(s)	501, 789
BfuAI	ACCTGC	1 cut(s)	826
BglII	AGATCT	1 cut(s)	235
BisI	GCNGC	5 cut(s)	168, 372, 464, 501, 534
BlnI	CCTAGG	1 cut(s)	809
BlsI	GCNGC	5 cut(s)	169, 373, 465, 502, 535
BmcAI	AGTACT	1 cut(s)	604
Bme1390I	CCNGG	7 cut(s)	275, 308, 354, 538, 700, 716, 894
Bme18I	GGWCC	1 cut(s)	905
BmgT120I	GGNCC	2 cut(s)	845, 905
BmiI	GGNNCC	3 cut(s)	272, 336, 846
BmrFI	CCNGG	7 cut(s)	275, 308, 354, 538, 700, 716, 894
BmrI	ACTGGG	1 cut(s)	554
BmsI	GCATC	2 cut(s)	339, 697
BmuI	ACTGGG	1 cut(s)	554
Bpu10I	CCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	2 cut(s)	955, 967
BpuMI	CCSGG	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	390
BsaJI	CCNNGG	3 cut(s)	306, 809, 893
BsaWI	WCCGGW	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 810
Bse1I	ACTGG	1 cut(s)	560
BseBI	CCWGG	6 cut(s)	308, 354, 538, 700, 716, 894
BseDI	CCNNGG	3 cut(s)	306, 809, 893
BseGI	GGATG	3 cut(s)	217, 301, 553
BseLI	CCNNNNNNNGG	2 cut(s)	307, 810
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	560
BseRI	GAGGAG	1 cut(s)	594
BseSI	GKGCMC	1 cut(s)	555
BseXI	GCAGC	4 cut(s)	154, 358, 487, 545
BshFI	GGCC	4 cut(s)	175, 300, 466, 847
BshNI	GGYRCC	2 cut(s)	270, 334
BsiSI	CCGG	2 cut(s)	218, 274
BslI	CCNNNNNNNGG	2 cut(s)	307, 810
BsmAI	GTCTC	3 cut(s)	390, 410, 488
BsmBI	CGTCTC	1 cut(s)	488
BsnI	GGCC	4 cut(s)	175, 300, 466, 847
Bso31I	GGTCTC	1 cut(s)	390
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp143I	GATC	5 cut(s)	235, 427, 691, 793, 813
BspACI	CCGC	3 cut(s)	268, 463, 1018
BspANI	GGCC	4 cut(s)	175, 300, 466, 847
BspCNI	CTCAG	1 cut(s)	169
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	3 cut(s)	272, 336, 846
BspMAI	CTGCAG	1 cut(s)	505
BspMI	ACCTGC	1 cut(s)	826
BspPI	GGATC	3 cut(s)	699, 788, 821
BspT107I	GGYRCC	2 cut(s)	270, 334
BspTNI	GGTCTC	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	560
BssECI	CCNNGG	3 cut(s)	306, 809, 893
BssMI	GATC	5 cut(s)	235, 427, 691, 793, 813
BssNAI	GTATAC	1 cut(s)	284
BssT1I	CCWWGG	1 cut(s)	809
Bst1107I	GTATAC	1 cut(s)	284
Bst2UI	CCWGG	6 cut(s)	308, 354, 538, 700, 716, 894
Bst4CI	ACNGT	1 cut(s)	960
Bst6I	CTCTTC	1 cut(s)	605
BstAPI	GCANNNNNTGC	2 cut(s)	317, 371
BstDEI	CTNAG	5 cut(s)	125, 177, 232, 575, 606
BstENI	CCTNNNNNAGG	1 cut(s)	808
BstF5I	GGATG	3 cut(s)	217, 301, 553
BstKTI	GATC	5 cut(s)	238, 430, 694, 796, 816
BstMAI	GTCTC	3 cut(s)	390, 410, 488
BstMBI	GATC	5 cut(s)	235, 427, 691, 793, 813
BstMWI	GCNNNNNNNGC	3 cut(s)	317, 371, 785
BstNI	CCWGG	6 cut(s)	308, 354, 538, 700, 716, 894
BstSCI	CCNGG	7 cut(s)	273, 306, 352, 536, 698, 714, 892
BstSFI	CTRYAG	2 cut(s)	501, 789
BstSLI	GKGCMC	1 cut(s)	555
BstV1I	GCAGC	4 cut(s)	154, 358, 487, 545
BstX2I	RGATCY	3 cut(s)	235, 691, 793
BstYI	RGATCY	3 cut(s)	235, 691, 793
BstZ17I	GTATAC	1 cut(s)	284
BsuRI	GGCC	4 cut(s)	175, 300, 466, 847
BtsCI	GGATG	3 cut(s)	217, 301, 553
BtsIMutI	CAGTG	1 cut(s)	631
BveI	ACCTGC	1 cut(s)	826
CaiI	CAGNNNCTG	2 cut(s)	509, 566
CciI	TCATGA	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	845, 905
CseI	GACGC	1 cut(s)	470
Csp6I	GTAC	3 cut(s)	215, 271, 603
CviAII	CATG	6 cut(s)	43, 149, 171, 433, 497, 665
CviQI	GTAC	3 cut(s)	215, 271, 603
DdeI	CTNAG	5 cut(s)	125, 177, 232, 575, 606
DpnI	GATC	5 cut(s)	237, 429, 693, 795, 815
DpnII	GATC	5 cut(s)	235, 427, 691, 793, 813
EaeI	YGGCCR	2 cut(s)	298, 464
Eam1104I	CTCTTC	1 cut(s)	605
EarI	CTCTTC	1 cut(s)	605
Eco130I	CCWWGG	1 cut(s)	809
Eco31I	GGTCTC	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	905
Eco57I	CTGAAG	1 cut(s)	717
EcoNI	CCTNNNNNAGG	1 cut(s)	808
EcoRII	CCWGG	6 cut(s)	306, 352, 536, 698, 714, 892
EcoT14I	CCWWGG	1 cut(s)	809
ErhI	CCWWGG	1 cut(s)	809
Esp3I	CGTCTC	1 cut(s)	488
FaeI	CATG	6 cut(s)	46, 152, 174, 436, 500, 668
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FatI	CATG	6 cut(s)	42, 148, 170, 432, 496, 664
FauI	CCCGC	1 cut(s)	1011
FauNDI	CATATG	2 cut(s)	20, 472
FblI	GTMKAC	1 cut(s)	283
Fnu4HI	GCNGC	5 cut(s)	168, 372, 464, 501, 534
FokI	GGATG	3 cut(s)	224, 288, 560
Fsp4HI	GCNGC	5 cut(s)	168, 372, 464, 501, 534
FspBI	CTAG	3 cut(s)	161, 810, 881
GluI	GCNGC	5 cut(s)	168, 372, 464, 501, 534
HaeIII	GGCC	4 cut(s)	175, 300, 466, 847
HapII	CCGG	2 cut(s)	218, 274
HgaI	GACGC	1 cut(s)	470
Hin1II	CATG	6 cut(s)	46, 152, 174, 436, 500, 668
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	3 cut(s)	221, 257, 866
HpaII	CCGG	2 cut(s)	218, 274
Hpy166II	GTNNAC	3 cut(s)	134, 284, 908
Hpy188I	TCNGA	3 cut(s)	15, 256, 348
Hpy188III	TCNNGA	6 cut(s)	48, 149, 510, 545, 677, 766
Hpy8I	GTNNAC	3 cut(s)	134, 284, 908
HpyAV	CCTTC	2 cut(s)	406, 995
HpyCH4III	ACNGT	1 cut(s)	960
HpyCH4IV	ACGT	1 cut(s)	901
HpyCH4V	TGCA	4 cut(s)	170, 365, 503, 533
HpyF10VI	GCNNNNNNNGC	3 cut(s)	317, 371, 785
HpyF3I	CTNAG	5 cut(s)	125, 177, 232, 575, 606
HpySE526I	ACGT	1 cut(s)	901
Hsp92II	CATG	6 cut(s)	46, 152, 174, 436, 500, 668
KpnI	GGTACC	1 cut(s)	274
Kzo9I	GATC	5 cut(s)	235, 427, 691, 793, 813
LmnI	GCTCC	1 cut(s)	525
Lsp1109I	GCAGC	4 cut(s)	154, 358, 487, 545
LweI	GCATC	2 cut(s)	339, 697
MaeI	CTAG	3 cut(s)	161, 810, 881
MaeII	ACGT	1 cut(s)	901
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	5 cut(s)	237, 429, 693, 795, 815
MboI	GATC	5 cut(s)	235, 427, 691, 793, 813
MboII	GAAGA	3 cut(s)	55, 588, 622
MfeI	CAATTG	1 cut(s)	849
MflI	RGATCY	3 cut(s)	235, 691, 793
MhlI	GDGCHC	1 cut(s)	555
MlsI	TGGCCA	1 cut(s)	300
MluCI	AATT	7 cut(s)	27, 37, 225, 513, 645, 671, 849
MluNI	TGGCCA	1 cut(s)	300
MlyI	GAGTC	1 cut(s)	230
Mox20I	TGGCCA	1 cut(s)	300
MroXI	GAANNNNTTC	1 cut(s)	761
MscI	TGGCCA	1 cut(s)	300
MseI	TTAA	2 cut(s)	83, 315
Msp20I	TGGCCA	1 cut(s)	300
MspI	CCGG	2 cut(s)	218, 274
MspR9I	CCNGG	7 cut(s)	275, 308, 354, 538, 700, 716, 894
MunI	CAATTG	1 cut(s)	849
MvaI	CCWGG	6 cut(s)	308, 354, 538, 700, 716, 894
MwoI	GCNNNNNNNGC	3 cut(s)	317, 371, 785
NciI	CCSGG	1 cut(s)	275
NdeI	CATATG	2 cut(s)	20, 472
NdeII	GATC	5 cut(s)	235, 427, 691, 793, 813
NlaIII	CATG	6 cut(s)	46, 152, 174, 436, 500, 668
NlaIV	GGNNCC	3 cut(s)	272, 336, 846
NmuCI	GTSAC	1 cut(s)	31
PagI	TCATGA	1 cut(s)	148
PdmI	GAANNNNTTC	1 cut(s)	761
PfeI	GAWTC	2 cut(s)	257, 866
PkrI	GCNGC	5 cut(s)	169, 373, 465, 502, 535
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
Psp6I	CCWGG	6 cut(s)	306, 352, 536, 698, 714, 892
PspGI	CCWGG	6 cut(s)	306, 352, 536, 698, 714, 892
PspN4I	GGNNCC	3 cut(s)	272, 336, 846
PspPI	GGNCC	2 cut(s)	845, 905
PstI	CTGCAG	1 cut(s)	505
PstNI	CAGNNNCTG	2 cut(s)	509, 566
PsuI	RGATCY	3 cut(s)	235, 691, 793
RsaI	GTAC	3 cut(s)	216, 272, 604
RsaNI	GTAC	3 cut(s)	215, 271, 603
SaqAI	TTAA	2 cut(s)	83, 315
SatI	GCNGC	5 cut(s)	168, 372, 464, 501, 534
Sau3AI	GATC	5 cut(s)	235, 427, 691, 793, 813
Sau96I	GGNCC	2 cut(s)	845, 905
ScaI	AGTACT	1 cut(s)	604
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	7 cut(s)	275, 308, 354, 538, 700, 716, 894
SduI	GDGCHC	1 cut(s)	555
SfaNI	GCATC	2 cut(s)	339, 697
SfcI	CTRYAG	2 cut(s)	501, 789
SinI	GGWCC	1 cut(s)	905
SmlI	CTYRAG	2 cut(s)	934, 946
SmoI	CTYRAG	2 cut(s)	934, 946
Sse9I	AATT	7 cut(s)	27, 37, 225, 513, 645, 671, 849
SsiI	CCGC	3 cut(s)	268, 463, 1018
SspI	AATATT	2 cut(s)	87, 206
SspMI	CTAG	3 cut(s)	161, 810, 881
StyD4I	CCNGG	7 cut(s)	273, 306, 352, 536, 698, 714, 892
StyI	CCWWGG	1 cut(s)	809
TaaI	ACNGT	1 cut(s)	960
TaiI	ACGT	1 cut(s)	904
TaqI	TCGA	2 cut(s)	676, 859
TasI	AATT	7 cut(s)	27, 37, 225, 513, 645, 671, 849
TatI	WGTACW	1 cut(s)	602
TauI	GCSGC	1 cut(s)	466
TfiI	GAWTC	2 cut(s)	257, 866
Tru1I	TTAA	2 cut(s)	83, 315
Tru9I	TTAA	2 cut(s)	83, 315
TscAI	CASTG	1 cut(s)	631
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	4 cut(s)	167, 371, 500, 533
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	5 cut(s)	31, 55, 175, 399, 913
TspRI	CASTG	1 cut(s)	631
VpaK11BI	GGWCC	1 cut(s)	905
XagI	CCTNNNNNAGG	1 cut(s)	808
XapI	RAATTY	3 cut(s)	37, 513, 671
XcmI	CCANNNNNNNNNTGG	1 cut(s)	719
XmaJI	CCTAGG	1 cut(s)	809
XmiI	GTMKAC	1 cut(s)	283
XmnI	GAANNNNTTC	1 cut(s)	761
XspI	CTAG	3 cut(s)	161, 810, 881
ZrmI	AGTACT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.