Rorug05G0553700

Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002739
Physical Location & Seq
Forward (+)
74149377 .. 74152518
3142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0553700.1

Sequence Viewer

Length: 1233 bp
ATGGAGGCGCTCTCTCTCTCTCTCATCCTCCCTCTCTATCCATCATCGCAAACACCCAAAATCACCTACCCATGTAATCATCAGATCTTCCACCTTCGAATTTCCGATGGCGTTTCCCTACACAAACCTCACGCTCTTTCTCTCCCTACCGTCTCCCTCGCCTTCTCCACAGCATCTCTTGCTTCACTTCCTTCTTTGACTCTCAGAAACCCCAACAAGGCCTTGAACCTCAGAAGTGCCTTTGTGCCCCAAAATGGGCTCAGAAAGGGCTTCGCTTGCGGTGGATTGAAATGGAGGCTTGAGACCCAAAATAAGAAGGTCACTGTTCGCTGCGATGCTGCGGTGCCGAGAAAGAGGTCGCCGATACGCCCGGTCAGTCGGCTAATGGATTTGATAGTGCACAGTCTATACAGCCACAAGAAGGTGTTCCTTAGGGAGCGTGTTAGTAATGCAAGTGATGCTTTGGACAAGTTGAGATTTTTGAGTGTGACTGAGCCCTCGCTGCTTGGAGATGCTGTTGAGCTGCAGATACGCATCAAACCCGACCCAGAGAATGGGACTATCACTATAACGGATGCTATTGGGATGACAAAGGAGGAACTCATTGACTGCCTTGGTACCATTGCTCAGAGTGGTACTTCAAAATTCTTGACGGCTCTGAAGGAAAATAAGGATCTTGGTGCAGACAACGGTTTGATTGGTCAATTTGGTGTTGGGTTCTATTCTGCTTTTCTTGTTGCTGACAAGGTAGTTGTTTCTACAAAAAGCCCAAAATCAGACAAGCAATACGTCTGGGAATCAGCTGCTGAGAGTAGCTCTTATGTGATTAGGGTAGAAACTGATCCAGAAAATATCATTAGCCGTGGGACGCAGATCAAACTATATTTAAGGCCGGATGACAAGTATGAGTTCTCAGAGCCTGCCCGGATCCAGAGTTTGGTAAAGAATTACTCGCAATTTGTTTCTTTCCCCATCTACACGTGGCAAGAAAAGTCAAGGACTGTTGAGGTTGAAGAGGAGGAAGAACCAAAGGAAGGAGAAGAACCAAAGCCAGAGGGTGAGAAGAAAAAGAAGACTATAACTGAGAAGTATTGGGATTGGGAATTAGCCAATGAAACAAAGCCTATATGGGTAAAAGTTGGCATCAAACATAATATGAAGATATTTAAAAGGCCACAGCATGGATCACTGACCATTTATCTTTTGCAATCAACAAAGACGATTCTAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3769

Protein Analysis

410

Amino Acids

46.12

Weight (kDa)

9.19

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP90 PF00183 303 - 379 2.5e-16 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 617
AccB1I GGYRCC 2 cut(s) 343, 617
AccB7I CCANNNNNTGG 3 cut(s) 554, 937, 1181
AciI CCGC 2 cut(s) 279, 341
AclWI GGATC 5 cut(s) 681, 836, 922, 935, 1192
AcsI RAATTY 2 cut(s) 99, 644
AcuI CTGAAG 1 cut(s) 680
AcvI CACGTG 1 cut(s) 981
AfaI GTAC 2 cut(s) 619, 637
AfiI CCNNNNNNNGG 8 cut(s) 217, 254, 255, 421, 554, 937, 1034, 1181
AflIII ACRYGT 1 cut(s) 978
AgsI TTSAA 4 cut(s) 226, 289, 642, 1013
AluBI AGCT 3 cut(s) 523, 803, 816
AluI AGCT 3 cut(s) 523, 803, 816
Alw21I GWGCWC 1 cut(s) 402
Alw26I GTCTC 2 cut(s) 157, 296
Alw44I GTGCAC 1 cut(s) 398
AlwI GGATC 5 cut(s) 681, 836, 922, 935, 1192
AlwNI CAGNNNCTG 2 cut(s) 806, 920
AoxI GGCC 3 cut(s) 219, 890, 1172
ApaLI GTGCAC 1 cut(s) 398
ApeKI GCWGC 5 cut(s) 330, 338, 502, 523, 803
ApoI RAATTY 2 cut(s) 99, 644
Asp700I GAANNNNTTC 1 cut(s) 425
Asp718I GGTACC 1 cut(s) 617
AspLEI GCGC 1 cut(s) 10
AsuC2I CCSGG 2 cut(s) 371, 925
AsuHPI GGTGA 2 cut(s) 55, 1070
AsuII TTCGAA 1 cut(s) 97
AxyI CCTNAGG 1 cut(s) 431
BaeGI GKGCMC 2 cut(s) 249, 402
BamHI GGATCC 1 cut(s) 927
BanI GGYRCC 2 cut(s) 343, 617
BanII GRGCYC 2 cut(s) 261, 498
BbrPI CACGTG 1 cut(s) 981
BbsI GAAGAC 1 cut(s) 1079
Bbv12I GWGCWC 1 cut(s) 402
BbvI GCAGC 5 cut(s) 317, 325, 489, 510, 790
BccI CCATC 3 cut(s) 49, 101, 980
BceAI ACGGC 2 cut(s) 669, 846
BcnI CCSGG 2 cut(s) 371, 925
BcoDI GTCTC 2 cut(s) 157, 296
BfaI CTAG 1 cut(s) 1231
BfmI CTRYAG 1 cut(s) 524
BfoI RGCGCY 1 cut(s) 11
BglII AGATCT 1 cut(s) 84
BisI GCNGC 5 cut(s) 331, 339, 503, 524, 804
BlsI GCNGC 5 cut(s) 332, 340, 504, 525, 805
Bme1390I CCNGG 2 cut(s) 371, 925
BmiI GGNNCC 3 cut(s) 345, 619, 929
BmrFI CCNGG 2 cut(s) 371, 925
BmsI GCATC 7 cut(s) 182, 325, 448, 502, 543, 565, 1152
BpiI GAAGAC 1 cut(s) 1079
BplI GAGNNNNNCTC 3 cut(s) 28, 800, 832
Bpu14I TTCGAA 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 320
BpuMI CCSGG 2 cut(s) 371, 925
BsaAI YACGTR 1 cut(s) 981
BsaBI GATNNNNATC 2 cut(s) 533, 1226
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 613, 862
BsaXI ACNNNNNCTCC 2 cut(s) 501, 531
Bsc4I CCNNNNNNNGG 8 cut(s) 217, 254, 255, 421, 554, 937, 1034, 1181
Bse21I CCTNAGG 1 cut(s) 431
Bse3DI GCAATG 1 cut(s) 621
Bse8I GATNNNNATC 2 cut(s) 533, 1226
BseDI CCNNGG 2 cut(s) 613, 862
BseGI GGATG 4 cut(s) 24, 580, 591, 901
BseJI GATNNNNATC 2 cut(s) 533, 1226
BseLI CCNNNNNNNGG 8 cut(s) 217, 254, 255, 421, 554, 937, 1034, 1181
BseMI GCAATG 1 cut(s) 621
BseMII CTCAG 8 cut(s) 217, 244, 274, 483, 641, 798, 927, 1074
BseRI GAGGAG 1 cut(s) 1031
BseSI GKGCMC 2 cut(s) 249, 402
BseXI GCAGC 5 cut(s) 317, 325, 489, 510, 790
BsgI GTGCAG 1 cut(s) 702
BshFI GGCC 3 cut(s) 221, 892, 1174
BshNI GGYRCC 2 cut(s) 343, 617
BsiHKAI GWGCWC 1 cut(s) 402
BsiSI CCGG 3 cut(s) 371, 893, 925
BslFI GGGAC 2 cut(s) 571, 880
BslI CCNNNNNNNGG 8 cut(s) 217, 254, 255, 421, 554, 937, 1034, 1181
BsmAI GTCTC 2 cut(s) 157, 296
BsmBI CGTCTC 1 cut(s) 157
BsmFI GGGAC 2 cut(s) 571, 880
BsnI GGCC 3 cut(s) 221, 892, 1174
Bso31I GGTCTC 1 cut(s) 296
Bsp119I TTCGAA 1 cut(s) 97
Bsp1286I GDGCHC 4 cut(s) 249, 261, 402, 498
Bsp143I GATC 6 cut(s) 84, 673, 841, 873, 927, 1184
BspACI CCGC 2 cut(s) 279, 341
BspANI GGCC 3 cut(s) 221, 892, 1174
BspCNI CTCAG 8 cut(s) 216, 243, 273, 484, 640, 799, 926, 1075
BspLI GGNNCC 3 cut(s) 345, 619, 929
BspMAI CTGCAG 1 cut(s) 528
BspPI GGATC 5 cut(s) 681, 836, 922, 935, 1192
BspT104I TTCGAA 1 cut(s) 97
BspT107I GGYRCC 2 cut(s) 343, 617
BspTNI GGTCTC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 621
BssECI CCNNGG 2 cut(s) 613, 862
BssMI GATC 6 cut(s) 84, 673, 841, 873, 927, 1184
BssT1I CCWWGG 1 cut(s) 613
Bst4CI ACNGT 5 cut(s) 151, 325, 404, 692, 1003
Bst6I CTCTTC 1 cut(s) 1008
BstAPI GCANNNNNTGC 2 cut(s) 179, 458
BstBAI YACGTR 1 cut(s) 981
BstBI TTCGAA 1 cut(s) 97
BstC8I GCNNGC 2 cut(s) 277, 921
BstDEI CTNAG 9 cut(s) 203, 230, 260, 431, 492, 627, 807, 913, 1083
BstDSI CCRYGG 1 cut(s) 862
BstF5I GGATG 4 cut(s) 24, 580, 591, 901
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 6 cut(s) 87, 676, 844, 876, 930, 1187
BstMAI GTCTC 2 cut(s) 157, 296
BstMBI GATC 6 cut(s) 84, 673, 841, 873, 927, 1184
BstMWI GCNNNNNNNGC 4 cut(s) 179, 276, 458, 502
BstSCI CCNGG 2 cut(s) 369, 923
BstSFI CTRYAG 1 cut(s) 524
BstSLI GKGCMC 2 cut(s) 249, 402
BstV1I GCAGC 5 cut(s) 317, 325, 489, 510, 790
BstV2I GAAGAC 1 cut(s) 1079
BstX2I RGATCY 3 cut(s) 84, 673, 927
BstYI RGATCY 3 cut(s) 84, 673, 927
Bsu36I CCTNAGG 1 cut(s) 431
BsuRI GGCC 3 cut(s) 221, 892, 1174
BtgI CCRYGG 1 cut(s) 862
BtgZI GCGATG 2 cut(s) 30, 348
BtsCI GGATG 4 cut(s) 24, 580, 591, 901
BtsIMutI CAGTG 2 cut(s) 321, 1187
Cac8I GCNNGC 2 cut(s) 277, 921
CaiI CAGNNNCTG 2 cut(s) 806, 920
CfoI GCGC 1 cut(s) 10
CseI GACGC 1 cut(s) 877
Csp6I GTAC 2 cut(s) 618, 636
CviAII CATG 2 cut(s) 72, 1181
CviQI GTAC 2 cut(s) 618, 636
DdeI CTNAG 9 cut(s) 203, 230, 260, 431, 492, 627, 807, 913, 1083
DpnI GATC 6 cut(s) 86, 675, 843, 875, 929, 1186
DpnII GATC 6 cut(s) 84, 673, 841, 873, 927, 1184
DraI TTTAAA 1 cut(s) 1168
Eam1104I CTCTTC 1 cut(s) 1008
EarI CTCTTC 1 cut(s) 1008
Eco130I CCWWGG 1 cut(s) 613
Eco147I AGGCCT 1 cut(s) 221
Eco24I GRGCYC 2 cut(s) 261, 498
Eco31I GGTCTC 1 cut(s) 296
Eco57I CTGAAG 1 cut(s) 680
Eco72I CACGTG 1 cut(s) 981
Eco81I CCTNAGG 1 cut(s) 431
EcoT14I CCWWGG 1 cut(s) 613
EcoT38I GRGCYC 2 cut(s) 261, 498
ErhI CCWWGG 1 cut(s) 613
Esp3I CGTCTC 1 cut(s) 157
FaeI CATG 2 cut(s) 75, 1184
FalI AAGNNNNNCTT 2 cut(s) 445, 477
FaqI GGGAC 2 cut(s) 571, 880
FatI CATG 2 cut(s) 71, 1180
Fnu4HI GCNGC 5 cut(s) 331, 339, 503, 524, 804
FokI GGATG 4 cut(s) 11, 587, 598, 908
FriOI GRGCYC 2 cut(s) 261, 498
Fsp4HI GCNGC 5 cut(s) 331, 339, 503, 524, 804
FspBI CTAG 1 cut(s) 1231
GlaI GCGC 1 cut(s) 9
GluI GCNGC 5 cut(s) 331, 339, 503, 524, 804
HaeII RGCGCY 1 cut(s) 11
HaeIII GGCC 3 cut(s) 221, 892, 1174
HapII CCGG 3 cut(s) 371, 893, 925
HgaI GACGC 1 cut(s) 877
HhaI GCGC 1 cut(s) 10
Hin1II CATG 2 cut(s) 75, 1184
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HinfI GANTC 3 cut(s) 199, 797, 1222
HpaII CCGG 3 cut(s) 371, 893, 925
HphI GGTGA 2 cut(s) 55, 1070
Hpy166II GTNNAC 1 cut(s) 400
Hpy188I TCNGA 9 cut(s) 84, 106, 206, 233, 263, 630, 660, 778, 916
Hpy188III TCNNGA 3 cut(s) 649, 845, 931
Hpy8I GTNNAC 1 cut(s) 400
HpyAV CCTTC 7 cut(s) 104, 172, 201, 310, 415, 655, 1028
HpyCH4III ACNGT 5 cut(s) 151, 325, 404, 692, 1003
HpyCH4IV ACGT 2 cut(s) 789, 980
HpyCH4V TGCA 5 cut(s) 400, 452, 526, 683, 1207
HpyF10VI GCNNNNNNNGC 4 cut(s) 179, 276, 458, 502
HpyF3I CTNAG 9 cut(s) 203, 230, 260, 431, 492, 627, 807, 913, 1083
HpySE526I ACGT 2 cut(s) 789, 980
Hsp92II CATG 2 cut(s) 75, 1184
HspAI GCGC 1 cut(s) 8
KpnI GGTACC 1 cut(s) 621
Kzo9I GATC 6 cut(s) 84, 673, 841, 873, 927, 1184
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 9 cut(s) 384, 561, 778, 858, 906, 933, 938, 944, 1065
Lsp1109I GCAGC 5 cut(s) 317, 325, 489, 510, 790
LweI GCATC 7 cut(s) 182, 325, 448, 502, 543, 565, 1152
MaeI CTAG 1 cut(s) 1231
MaeII ACGT 2 cut(s) 789, 980
MaeIII GTNAC 2 cut(s) 319, 487
MalI GATC 6 cut(s) 86, 675, 843, 875, 929, 1186
MboI GATC 6 cut(s) 84, 673, 841, 873, 927, 1184
MboII GAAGA 7 cut(s) 79, 1025, 1034, 1052, 1075, 1084, 1171
MflI RGATCY 3 cut(s) 84, 673, 927
MhlI GDGCHC 4 cut(s) 249, 261, 402, 498
MluCI AATT 6 cut(s) 99, 644, 704, 946, 956, 1103
MlyI GAGTC 1 cut(s) 193
MroXI GAANNNNTTC 1 cut(s) 425
MseI TTAA 2 cut(s) 887, 1167
MspA1I CMGCKG 1 cut(s) 803
MspI CCGG 3 cut(s) 371, 893, 925
MspR9I CCNGG 2 cut(s) 371, 925
MwoI GCNNNNNNNGC 4 cut(s) 179, 276, 458, 502
NciI CCSGG 2 cut(s) 371, 925
NdeII GATC 6 cut(s) 84, 673, 841, 873, 927, 1184
NlaIII CATG 2 cut(s) 75, 1184
NlaIV GGNNCC 3 cut(s) 345, 619, 929
NmeAIII GCCGAG 1 cut(s) 372
NmuCI GTSAC 2 cut(s) 319, 487
NspV TTCGAA 1 cut(s) 97
PceI AGGCCT 1 cut(s) 221
PdmI GAANNNNTTC 1 cut(s) 425
PfeI GAWTC 2 cut(s) 797, 1222
PflMI CCANNNNNTGG 3 cut(s) 554, 937, 1181
PkrI GCNGC 5 cut(s) 332, 340, 504, 525, 805
PleI GAGTC 1 cut(s) 193
PmaCI CACGTG 1 cut(s) 981
PmlI CACGTG 1 cut(s) 981
PpsI GAGTC 1 cut(s) 193
Ppu21I YACGTR 1 cut(s) 981
PspCI CACGTG 1 cut(s) 981
PspN4I GGNNCC 3 cut(s) 345, 619, 929
PstI CTGCAG 1 cut(s) 528
PstNI CAGNNNCTG 2 cut(s) 806, 920
PsuI RGATCY 3 cut(s) 84, 673, 927
PvuII CAGCTG 1 cut(s) 803
RsaI GTAC 2 cut(s) 619, 637
RsaNI GTAC 2 cut(s) 618, 636
SaqAI TTAA 2 cut(s) 887, 1167
SatI GCNGC 5 cut(s) 331, 339, 503, 524, 804
Sau3AI GATC 6 cut(s) 84, 673, 841, 873, 927, 1184
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 2 cut(s) 371, 925
SduI GDGCHC 4 cut(s) 249, 261, 402, 498
SfaNI GCATC 7 cut(s) 182, 325, 448, 502, 543, 565, 1152
SfcI CTRYAG 1 cut(s) 524
SfuI TTCGAA 1 cut(s) 97
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 6 cut(s) 99, 644, 704, 946, 956, 1103
SseBI AGGCCT 1 cut(s) 221
SsiI CCGC 2 cut(s) 279, 341
SspMI CTAG 1 cut(s) 1231
StuI AGGCCT 1 cut(s) 221
StyD4I CCNGG 2 cut(s) 369, 923
StyI CCWWGG 1 cut(s) 613
TaaI ACNGT 5 cut(s) 151, 325, 404, 692, 1003
TaiI ACGT 2 cut(s) 792, 983
TaqI TCGA 1 cut(s) 97
TasI AATT 6 cut(s) 99, 644, 704, 946, 956, 1103
TfiI GAWTC 2 cut(s) 797, 1222
Tru1I TTAA 2 cut(s) 887, 1167
Tru9I TTAA 2 cut(s) 887, 1167
TscAI CASTG 2 cut(s) 328, 1194
TseFI GTSAC 2 cut(s) 319, 487
TseI GCWGC 5 cut(s) 330, 338, 502, 523, 803
Tsp45I GTSAC 2 cut(s) 319, 487
TspDTI ATGAA 2 cut(s) 1128, 1172
TspGWI ACGGA 1 cut(s) 587
TspRI CASTG 2 cut(s) 328, 1194
Van91I CCANNNNNTGG 3 cut(s) 554, 937, 1181
VneI GTGCAC 1 cut(s) 398
XapI RAATTY 2 cut(s) 99, 644
XmnI GAANNNNTTC 1 cut(s) 425
XspI CTAG 1 cut(s) 1231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.