Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002739

Physical Location & Seq

Genomic Coordinates Reverse (-)

16187851 .. 16188647

Gene Structure 797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g17920.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCAGTTGATATGAGGGGAGATGAGGGCAATTCTAGGAGCAATAAGAAGAGAAGTCCATTCAGTGCTGATTTTTTCGGCTCTCTCTGCCATACTTTCCAGCACGGAAAATTTAGAGAGCTCTACAGTGATCTGACCAGGATTGATGCTCGCCAGGATATTTGTTCAGCTTCAGCTTTGGCTAAATGGGTGATTAATGGTTTGAAGAGTTCCTCAGCTAATAGTGCAAAAGATCCGATGTCCTTCTCTAGGAACAATCTAATCTTTCAGCAGCAGATTTATGGGCCAATTGTCTTTAGAGTGGATTCCAGGGTTGCACTTGATTCTTTGAGCGGGAAACATGCCCCACGTATTGAGGATTTCATATACAGCTTGAGCTACTCCTTGAGACTTTTACAATCAGGGAAGGTCGTTGCTTGGTATTCCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3769

Protein Analysis

144

Amino Acids

16.08

Weight (kDa)

9.55

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44640
fragaria_vesca	FvH4_7g08780 FvH4_7g08780 FvH4_7g08780 FvH4_7g08800
malus_domestica	MD02G1224900.v1.1 MD07G1088800.v1.1 MD07G1089000.v1.1 MD07G1089100.v1.1 MD07G1089700.v1.1 MD07G1089800.v1.1 MD07G1089900.v1.1 MD07G1090600.v1.1
prunus_persica	Prupe.2G115700_v2.0.a1 Prupe.2G115700_v2.0.a1
pyrus_communis	pycom02g17920 pycom02g17930 pycom02g19310 pycom07g07130
rosa_chinensis	RchiOBHm_Chr1g0344071
rosa_laevigata	RLG00000028928
rosa_multiflora	Rmu_sc0000251.1_g000013 Rmu_sc0000251.1_g000017 Rmu_sc0002276.1_g000004 Rmu_sc0002276.1_g000007 Rmu_sc0002297.1_g000007 Rmu_sc0002297.1_g000013 Rmu_ssc0000434.1_g000008
rosa_roxburghii	Rroxscaffold_4G00310080
rosa_rugosa	Rorug01G0171400 Rorug01G0171500 Rorug05G0553700 Rorug05G0553800
rosa_samantha	Rh1AG188100 Rh1BG154200 Rh1CG173600 Rh1DG186300 Rh5BG101000
rosa_wichuraiana	Rw1G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	333
AciI	CCGC	1 cut(s)	333
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	1 cut(s)	110
AcuI	CTGAAG	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	249
AgsI	TTSAA	1 cut(s)	205
AjnI	CCWGG	3 cut(s)	137, 153, 308
AluBI	AGCT	6 cut(s)	121, 170, 176, 218, 372, 378
AluI	AGCT	6 cut(s)	121, 170, 176, 218, 372, 378
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	382
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	1 cut(s)	284
ApeKI	GCWGC	1 cut(s)	271
ApoI	RAATTY	1 cut(s)	110
AseI	ATTAAT	1 cut(s)	195
AspS9I	GGNCC	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	123
BbvCI	CCTCAGC	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	283
BciT130I	CCWGG	3 cut(s)	139, 155, 310
BcoDI	GTCTC	1 cut(s)	382
BfaI	CTAG	2 cut(s)	36, 249
BfmI	CTRYAG	1 cut(s)	124
BisI	GCNGC	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	273
Bme1390I	CCNGG	3 cut(s)	139, 155, 310
BmgT120I	GGNCC	1 cut(s)	284
BmrFI	CCNGG	3 cut(s)	139, 155, 310
BmsI	GCATC	1 cut(s)	136
Bpu10I	CCTNAGC	1 cut(s)	214
BpuEI	CTTGAG	2 cut(s)	394, 406
BsaAI	YACGTR	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
BseBI	CCWGG	3 cut(s)	139, 155, 310
BseDI	CCNNGG	1 cut(s)	309
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	283
BshFI	GGCC	1 cut(s)	286
BsiHKAI	GWGCWC	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	130, 232
BspACI	CCGC	1 cut(s)	333
BspANI	GGCC	1 cut(s)	286
BspCNI	CTCAG	1 cut(s)	227
BspPI	GGATC	1 cut(s)	227
BsrBI	CCGCTC	1 cut(s)	333
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	2 cut(s)	130, 232
Bst2UI	CCWGG	3 cut(s)	139, 155, 310
Bst4CI	ACNGT	1 cut(s)	128
Bst6I	CTCTTC	2 cut(s)	44, 200
BstBAI	YACGTR	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	1 cut(s)	214
BstENI	CCTNNNNNAGG	1 cut(s)	247
BstKTI	GATC	2 cut(s)	133, 235
BstMAI	GTCTC	1 cut(s)	382
BstMBI	GATC	2 cut(s)	130, 232
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 224
BstNI	CCWGG	3 cut(s)	139, 155, 310
BstNSI	RCATGY	1 cut(s)	344
BstSCI	CCNGG	3 cut(s)	137, 153, 308
BstSFI	CTRYAG	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	286
BtsIMutI	CAGTG	2 cut(s)	70, 133
Cac8I	GCNNGC	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	284
CviAII	CATG	1 cut(s)	341
CviJI	RGCY	9 cut(s)	81, 121, 170, 176, 182, 218, 286, 372, 378
CviKI_1	RGCY	9 cut(s)	81, 121, 170, 176, 182, 218, 286, 372, 378
DdeI	CTNAG	1 cut(s)	214
DpnI	GATC	2 cut(s)	132, 234
DpnII	GATC	2 cut(s)	130, 232
Eam1104I	CTCTTC	2 cut(s)	44, 200
EarI	CTCTTC	2 cut(s)	44, 200
Ecl136II	GAGCTC	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	123
Eco53kI	GAGCTC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	156
EcoICRI	GAGCTC	1 cut(s)	121
EcoNI	CCTNNNNNAGG	1 cut(s)	247
EcoRII	CCWGG	3 cut(s)	137, 153, 308
EcoT38I	GRGCYC	1 cut(s)	123
FaeI	CATG	1 cut(s)	344
FaiI	YATR	7 cut(s)	14, 93, 282, 342, 365, 367, 430
FatI	CATG	1 cut(s)	340
FauI	CCCGC	1 cut(s)	326
Fnu4HI	GCNGC	1 cut(s)	272
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	272
FspBI	CTAG	2 cut(s)	36, 249
GluI	GCNGC	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	286
Hin1II	CATG	1 cut(s)	344
HinfI	GANTC	2 cut(s)	305, 323
HphI	GGTGA	1 cut(s)	202
Hpy188I	TCNGA	2 cut(s)	135, 237
HpyAV	CCTTC	2 cut(s)	253, 400
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	2 cut(s)	227, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 224
HpyF3I	CTNAG	1 cut(s)	214
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	1 cut(s)	344
Kzo9I	GATC	2 cut(s)	130, 232
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	8 cut(s)	113, 124, 140, 151, 167, 295, 322, 387
Lsp1109I	GCAGC	1 cut(s)	283
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	2 cut(s)	36, 249
MaeII	ACGT	1 cut(s)	349
MalI	GATC	2 cut(s)	132, 234
MbiI	CCGCTC	1 cut(s)	333
MboI	GATC	2 cut(s)	130, 232
MboII	GAAGA	2 cut(s)	61, 217
MfeI	CAATTG	1 cut(s)	288
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	3 cut(s)	31, 110, 288
MnlI	CCTC	4 cut(s)	9, 19, 223, 349
MseI	TTAA	1 cut(s)	195
MspR9I	CCNGG	3 cut(s)	139, 155, 310
MunI	CAATTG	1 cut(s)	288
MvaI	CCWGG	3 cut(s)	139, 155, 310
MwoI	GCNNNNNNNGC	2 cut(s)	87, 224
NdeII	GATC	2 cut(s)	130, 232
NlaIII	CATG	1 cut(s)	344
NspI	RCATGY	1 cut(s)	344
PfeI	GAWTC	2 cut(s)	305, 323
PkrI	GCNGC	1 cut(s)	273
Ppu21I	YACGTR	1 cut(s)	350
PshBI	ATTAAT	1 cut(s)	195
Psp124BI	GAGCTC	1 cut(s)	123
Psp6I	CCWGG	3 cut(s)	137, 153, 308
PspGI	CCWGG	3 cut(s)	137, 153, 308
PspPI	GGNCC	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	232
SacI	GAGCTC	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	1 cut(s)	272
Sau3AI	GATC	2 cut(s)	130, 232
Sau96I	GGNCC	1 cut(s)	284
ScrFI	CCNGG	3 cut(s)	139, 155, 310
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	8 cut(s)	123, 172, 178, 220, 352, 374, 380, 411
SfaNI	GCATC	1 cut(s)	136
SfcI	CTRYAG	1 cut(s)	124
SmlI	CTYRAG	2 cut(s)	373, 385
SmoI	CTYRAG	2 cut(s)	373, 385
Sse9I	AATT	3 cut(s)	31, 110, 288
SsiI	CCGC	1 cut(s)	333
SspMI	CTAG	2 cut(s)	36, 249
SstI	GAGCTC	1 cut(s)	123
StyD4I	CCNGG	3 cut(s)	137, 153, 308
TaaI	ACNGT	1 cut(s)	128
TaiI	ACGT	1 cut(s)	352
TasI	AATT	3 cut(s)	31, 110, 288
TfiI	GAWTC	2 cut(s)	305, 323
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	2 cut(s)	70, 133
TseI	GCWGC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	352
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	2 cut(s)	70, 133
VspI	ATTAAT	1 cut(s)	195
XagI	CCTNNNNNAGG	1 cut(s)	247
XapI	RAATTY	1 cut(s)	110
XceI	RCATGY	1 cut(s)	344
XspI	CTAG	2 cut(s)	36, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.