Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002739

Physical Location & Seq

Genomic Coordinates Forward (+)

9306181 .. 9307985

Gene Structure 1805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1089100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTCATCACTTGTCTCCGAATCTGGATGTGTACATAAAAACGGTGGTCATCCCCAGACAGTTAATTCCATAGTTGGTGAAGCACCTATTTCTCTAATGCCTGGATTCTGCGCAAACGCTGCCTTTTCTTTTGAAAAAAGCCAAGATCTTTGGAGGCAAAATGAGACACAAAAAGACATCATGATACAGAAAGAAAAGGGTTGGTGTTGGCGGCCATCTTATGATATGCGTCTTAAAGAATCTCATGCTGCAGTATCTGGAATCTTTGGTGGAAGCTGCACTGCCTGGTTTCAGGATGGGTACAACCCAGTGGCAGTTGATATGAGGGGAGACAAGGGCAATTTTAGGAGCAATAAGAAGAGAAGTCCATTCCATGCTGATTTTTTCGGCTGTCTCTGTTATACTTTCCAGCACGGAAAATTTAGAGAGCTCTATGGTGATCCGACCAGGATTGACACTCGCCTGGATATTTGTTCAGCTTCAGCTTTGGCTAAAAGGGTGATTAATGGTTTGAAGAGTTCCTCTGCTAATAGTGCAACAGATCCGATGTCCTCCCCTAGGATCAATCTAATCTTTCAGCACCAGATTTATGGGTCAATCGTCTTTAGACCGGATTCCAGGGTTGCACTCGACTCTTTGTGCTGGAAACACGCCCCACATATTGAGGATTTCATATACAGCTTGAGCTACTCCTTGAGACTTTTAAGAACAGGGAAGGTCGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3769

Protein Analysis

243

Amino Acids

27.07

Weight (kDa)

9.01

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44640
fragaria_vesca	FvH4_7g08780 FvH4_7g08780 FvH4_7g08780 FvH4_7g08800
malus_domestica	MD02G1224900.v1.1 MD07G1088800.v1.1 MD07G1089000.v1.1 MD07G1089100.v1.1 MD07G1089700.v1.1 MD07G1089800.v1.1 MD07G1089900.v1.1 MD07G1090600.v1.1
prunus_persica	Prupe.2G115700_v2.0.a1 Prupe.2G115700_v2.0.a1
pyrus_communis	pycom02g17920 pycom02g17930 pycom02g19310 pycom07g07130
rosa_chinensis	RchiOBHm_Chr1g0344071
rosa_laevigata	RLG00000028928
rosa_multiflora	Rmu_sc0000251.1_g000013 Rmu_sc0000251.1_g000017 Rmu_sc0002276.1_g000004 Rmu_sc0002276.1_g000007 Rmu_sc0002297.1_g000007 Rmu_sc0002297.1_g000013 Rmu_ssc0000434.1_g000008
rosa_roxburghii	Rroxscaffold_4G00310080
rosa_rugosa	Rorug01G0171400 Rorug01G0171500 Rorug05G0553700 Rorug05G0553800
rosa_samantha	Rh1AG188100 Rh1BG154200 Rh1CG173600 Rh1DG186300 Rh5BG101000
rosa_wichuraiana	Rw1G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	112
AciI	CCGC	1 cut(s)	211
AclWI	GGATC	3 cut(s)	434, 536, 569
AcoI	YGGCCR	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	419
AcuI	CTGAAG	1 cut(s)	465
AfaI	GTAC	2 cut(s)	33, 302
AfiI	CCNNNNNNNGG	1 cut(s)	558
AgsI	TTSAA	2 cut(s)	134, 514
AjnI	CCWGG	5 cut(s)	100, 284, 446, 462, 617
AluBI	AGCT	6 cut(s)	276, 430, 479, 485, 681, 687
AluI	AGCT	6 cut(s)	276, 430, 479, 485, 681, 687
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	5 cut(s)	19, 158, 324, 398, 691
AlwI	GGATC	3 cut(s)	434, 536, 569
AlwNI	CAGNNNCTG	1 cut(s)	257
AoxI	GGCC	1 cut(s)	212
ApeKI	GCWGC	3 cut(s)	119, 248, 276
ApoI	RAATTY	1 cut(s)	419
AseI	ATTAAT	1 cut(s)	504
AspA2I	CCTAGG	1 cut(s)	557
AspLEI	GCGC	1 cut(s)	113
AsuHPI	GGTGA	3 cut(s)	89, 449, 511
AvrII	CCTAGG	1 cut(s)	557
BanII	GRGCYC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	3 cut(s)	106, 235, 263
BccI	CCATC	2 cut(s)	223, 290
BciT130I	CCWGG	5 cut(s)	102, 286, 448, 464, 619
BcoDI	GTCTC	5 cut(s)	19, 158, 324, 398, 691
BfaI	CTAG	1 cut(s)	558
BfmI	CTRYAG	1 cut(s)	249
BglII	AGATCT	1 cut(s)	145
BisI	GCNGC	4 cut(s)	120, 212, 249, 277
BlnI	CCTAGG	1 cut(s)	557
BlsI	GCNGC	4 cut(s)	121, 213, 250, 278
Bme1390I	CCNGG	5 cut(s)	102, 286, 448, 464, 619
BmrFI	CCNGG	5 cut(s)	102, 286, 448, 464, 619
BmrI	ACTGGG	1 cut(s)	302
BmuI	ACTGGG	1 cut(s)	302
BpuEI	CTTGAG	2 cut(s)	703, 715
BsaJI	CCNNGG	2 cut(s)	557, 618
BsaWI	WCCGGW	1 cut(s)	610
Bsc4I	CCNNNNNNNGG	1 cut(s)	558
Bse1I	ACTGG	1 cut(s)	308
BseBI	CCWGG	5 cut(s)	102, 286, 448, 464, 619
BseDI	CCNNGG	2 cut(s)	557, 618
BseGI	GGATG	3 cut(s)	32, 49, 301
BseLI	CCNNNNNNNGG	1 cut(s)	558
BseNI	ACTGG	1 cut(s)	308
BseXI	GCAGC	3 cut(s)	106, 235, 263
BsgI	GTGCAG	1 cut(s)	262
BshFI	GGCC	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	432
BsiSI	CCGG	1 cut(s)	611
BslI	CCNNNNNNNGG	1 cut(s)	558
BsmAI	GTCTC	5 cut(s)	19, 158, 324, 398, 691
BsnI	GGCC	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp1407I	TGTACA	1 cut(s)	31
Bsp143I	GATC	4 cut(s)	145, 439, 541, 561
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	1 cut(s)	214
BspHI	TCATGA	1 cut(s)	180
BspMAI	CTGCAG	1 cut(s)	253
BspPI	GGATC	3 cut(s)	434, 536, 569
BsrGI	TGTACA	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	557, 618
BssMI	GATC	4 cut(s)	145, 439, 541, 561
BssT1I	CCWWGG	1 cut(s)	557
Bst2UI	CCWGG	5 cut(s)	102, 286, 448, 464, 619
Bst4CI	ACNGT	2 cut(s)	44, 61
Bst6I	CTCTTC	2 cut(s)	353, 509
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstAUI	TGTACA	1 cut(s)	31
BstENI	CCTNNNNNAGG	1 cut(s)	556
BstF5I	GGATG	3 cut(s)	32, 49, 301
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	4 cut(s)	148, 442, 544, 564
BstMAI	GTCTC	5 cut(s)	19, 158, 324, 398, 691
BstMBI	GATC	4 cut(s)	145, 439, 541, 561
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 533
BstNI	CCWGG	5 cut(s)	102, 286, 448, 464, 619
BstSCI	CCNGG	5 cut(s)	100, 284, 446, 462, 617
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	3 cut(s)	106, 235, 263
BstX2I	RGATCY	2 cut(s)	145, 541
BstXI	CCANNNNNNTGG	1 cut(s)	590
BstYI	RGATCY	2 cut(s)	145, 541
BsuRI	GGCC	1 cut(s)	214
BtsCI	GGATG	3 cut(s)	32, 49, 301
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	2 cut(s)	279, 315
CaiI	CAGNNNCTG	1 cut(s)	257
CciI	TCATGA	1 cut(s)	180
CfoI	GCGC	1 cut(s)	113
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	32, 301
CviAII	CATG	3 cut(s)	181, 245, 374
CviQI	GTAC	2 cut(s)	32, 301
DpnI	GATC	4 cut(s)	147, 441, 543, 563
DpnII	GATC	4 cut(s)	145, 439, 541, 561
EaeI	YGGCCR	1 cut(s)	212
Eam1104I	CTCTTC	2 cut(s)	353, 509
EarI	CTCTTC	2 cut(s)	353, 509
Ecl136II	GAGCTC	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	557
Eco24I	GRGCYC	1 cut(s)	432
Eco53kI	GAGCTC	1 cut(s)	430
Eco57I	CTGAAG	1 cut(s)	465
EcoICRI	GAGCTC	1 cut(s)	430
EcoNI	CCTNNNNNAGG	1 cut(s)	556
EcoRII	CCWGG	5 cut(s)	100, 284, 446, 462, 617
EcoT14I	CCWWGG	1 cut(s)	557
EcoT38I	GRGCYC	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	557
FaeI	CATG	3 cut(s)	184, 248, 377
FatI	CATG	3 cut(s)	180, 244, 373
Fnu4HI	GCNGC	4 cut(s)	120, 212, 249, 277
FokI	GGATG	3 cut(s)	36, 39, 308
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	4 cut(s)	120, 212, 249, 277
FspBI	CTAG	1 cut(s)	558
FspI	TGCGCA	1 cut(s)	112
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	4 cut(s)	120, 212, 249, 277
HaeIII	GGCC	1 cut(s)	214
HapII	CCGG	1 cut(s)	611
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	3 cut(s)	184, 248, 377
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HinfI	GANTC	6 cut(s)	20, 105, 239, 261, 614, 632
HpaII	CCGG	1 cut(s)	611
HphI	GGTGA	3 cut(s)	89, 449, 511
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	3 cut(s)	19, 444, 546
Hpy188III	TCNNGA	4 cut(s)	24, 181, 258, 293
Hpy8I	GTNNAC	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	709
HpyCH4III	ACNGT	2 cut(s)	44, 61
HpyCH4V	TGCA	4 cut(s)	251, 279, 536, 626
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 533
Hsp92II	CATG	3 cut(s)	184, 248, 377
HspAI	GCGC	1 cut(s)	111
Kzo9I	GATC	4 cut(s)	145, 439, 541, 561
LmnI	GCTCC	1 cut(s)	348
Lsp1109I	GCAGC	3 cut(s)	106, 235, 263
MaeI	CTAG	1 cut(s)	558
MalI	GATC	4 cut(s)	147, 441, 543, 563
MboI	GATC	4 cut(s)	145, 439, 541, 561
MboII	GAAGA	2 cut(s)	370, 526
MflI	RGATCY	2 cut(s)	145, 541
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	3 cut(s)	64, 340, 419
MlyI	GAGTC	1 cut(s)	626
MmeI	TCCRAC	1 cut(s)	467
MnlI	CCTC	5 cut(s)	147, 318, 532, 562, 658
MseI	TTAA	4 cut(s)	63, 234, 504, 704
MspI	CCGG	1 cut(s)	611
MspR9I	CCNGG	5 cut(s)	102, 286, 448, 464, 619
MvaI	CCWGG	5 cut(s)	102, 286, 448, 464, 619
MwoI	GCNNNNNNNGC	2 cut(s)	119, 533
NdeII	GATC	4 cut(s)	145, 439, 541, 561
NlaIII	CATG	3 cut(s)	184, 248, 377
NsbI	TGCGCA	1 cut(s)	112
PagI	TCATGA	1 cut(s)	180
PfeI	GAWTC	5 cut(s)	20, 105, 239, 261, 614
PkrI	GCNGC	4 cut(s)	121, 213, 250, 278
PleI	GAGTC	1 cut(s)	626
PpsI	GAGTC	1 cut(s)	626
PshBI	ATTAAT	1 cut(s)	504
Psp124BI	GAGCTC	1 cut(s)	432
Psp6I	CCWGG	5 cut(s)	100, 284, 446, 462, 617
PspGI	CCWGG	5 cut(s)	100, 284, 446, 462, 617
PstI	CTGCAG	1 cut(s)	253
PstNI	CAGNNNCTG	1 cut(s)	257
PsuI	RGATCY	2 cut(s)	145, 541
RsaI	GTAC	2 cut(s)	33, 302
RsaNI	GTAC	2 cut(s)	32, 301
SacI	GAGCTC	1 cut(s)	432
SaqAI	TTAA	4 cut(s)	63, 234, 504, 704
SatI	GCNGC	4 cut(s)	120, 212, 249, 277
Sau3AI	GATC	4 cut(s)	145, 439, 541, 561
SchI	GAGTC	1 cut(s)	626
ScrFI	CCNGG	5 cut(s)	102, 286, 448, 464, 619
SduI	GDGCHC	1 cut(s)	432
SetI	ASST	8 cut(s)	88, 278, 432, 481, 487, 683, 689, 720
SfcI	CTRYAG	1 cut(s)	249
SmlI	CTYRAG	2 cut(s)	682, 694
SmoI	CTYRAG	2 cut(s)	682, 694
Sse9I	AATT	3 cut(s)	64, 340, 419
SsiI	CCGC	1 cut(s)	211
SspMI	CTAG	1 cut(s)	558
SstI	GAGCTC	1 cut(s)	432
StyD4I	CCNGG	5 cut(s)	100, 284, 446, 462, 617
StyI	CCWWGG	1 cut(s)	557
TaaI	ACNGT	2 cut(s)	44, 61
TaqI	TCGA	1 cut(s)	630
TasI	AATT	3 cut(s)	64, 340, 419
TatI	WGTACW	1 cut(s)	31
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	5 cut(s)	20, 105, 239, 261, 614
Tru1I	TTAA	4 cut(s)	63, 234, 504, 704
Tru9I	TTAA	4 cut(s)	63, 234, 504, 704
TscAI	CASTG	2 cut(s)	286, 315
TseI	GCWGC	3 cut(s)	119, 248, 276
TspDTI	ATGAA	1 cut(s)	661
TspGWI	ACGGA	1 cut(s)	429
TspRI	CASTG	2 cut(s)	286, 315
VspI	ATTAAT	1 cut(s)	504
XagI	CCTNNNNNAGG	1 cut(s)	556
XapI	RAATTY	1 cut(s)	419
XmaJI	CCTAGG	1 cut(s)	557
XspI	CTAG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.