Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002739

Physical Location & Seq

Genomic Coordinates Forward (+)

9352309 .. 9356404

Gene Structure 4096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1089700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGATTCCCTTTGGGTGTTATACCTTCCTAATCCCCCACTTCTAACAGGGACTTGGGTTCTTTCTCTCTCCAGTCCCTCTTGCTCAGACCAGCTACCTCTAACTGTTCCGCCCGAAGAAACTTTTTCTTCTATTAAAGCTGAATTTACTAATGACGAGATGGAGGTCTCTACATTCAAAGATGTGGTGAAGCATGTCATGGACAAGTCACTTTATTCATTTGGATTATGCGCACAGCTTCTTTTGTCTCCGTCATCATCCATACAGTTGAGCACAGAAGGGAATGTTGTTAGATTTAATGTTCTTCCTGGGGTTTGTTCATGCCAGGCTGCATGGCCTGAACTGTTCGTTGACCATAAAGGAAAATACTGGGATTTGCCTGAGTCAATGTCCTTAGATATGTCATCACTTGTTTCCGGTTCTGGATTGTGGTACCGCATTGGTCTACCTAAAAACATCCAGGCAGTTAATTCCGTAGATGGTGAGGCACCTACTTCTCTAATGCCTGGATTCTGCGCAAAGGCTGCCTTTTCTTATGAAAAAAGCCAAGATCTGTGGAGGCAAAATGAGACACGAAAAGACATCATGATACAGAAAGAAAAGGGTTGGTTTTGGCGGCCATCTTATGATGTGCGTCATAAAGAACCTCATTCTTCAGTATCTGGAATTTTTGTCCAGGATGGGTACAACCCAGTGGCAGTTGATATGAAGGGAGACGAGGACAATTCTAGGAGCAATAAGAAGAGAAATCCATTCAGTGCTGATTTTTTCGGCTCTCTCTGCTGTACTTTCCAGCACGGGAAATTTAGAGAGCTCTATGGTGATCTAACCAGGATTGATTCTCGTCTGGATATTTGTTCAGCTTCAGCTTTGGCTAAAAGGTTTATTAATGGTTTGAAGAGTTCCTCTGCTAATAGTGCAAAAGATCCGATGTCCTCCCCTAGGATCAATCTAATCTTTCAGCAGCAGATTTATGGGCCAATTGTCTTTAGAGCGGATTCCAGGGTTGCACTTGACTGCGTTAGTATCGTGTCACATCCACTTGAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3769

Protein Analysis

351

Amino Acids

39.01

Weight (kDa)

5.91

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44640
fragaria_vesca	FvH4_7g08780 FvH4_7g08780 FvH4_7g08780 FvH4_7g08800
malus_domestica	MD02G1224900.v1.1 MD07G1088800.v1.1 MD07G1089000.v1.1 MD07G1089100.v1.1 MD07G1089700.v1.1 MD07G1089800.v1.1 MD07G1089900.v1.1 MD07G1090600.v1.1
prunus_persica	Prupe.2G115700_v2.0.a1 Prupe.2G115700_v2.0.a1
pyrus_communis	pycom02g17920 pycom02g17930 pycom02g19310 pycom07g07130
rosa_chinensis	RchiOBHm_Chr1g0344071
rosa_laevigata	RLG00000028928
rosa_multiflora	Rmu_sc0000251.1_g000013 Rmu_sc0000251.1_g000017 Rmu_sc0002276.1_g000004 Rmu_sc0002276.1_g000007 Rmu_sc0002297.1_g000007 Rmu_sc0002297.1_g000013 Rmu_ssc0000434.1_g000008
rosa_roxburghii	Rroxscaffold_4G00310080
rosa_rugosa	Rorug01G0171400 Rorug01G0171500 Rorug05G0553700 Rorug05G0553800
rosa_samantha	Rh1AG188100 Rh1BG154200 Rh1CG173600 Rh1DG186300 Rh5BG101000
rosa_wichuraiana	Rw1G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	232, 517
Acc65I	GGTACC	1 cut(s)	432
AccB1I	GGYRCC	2 cut(s)	432, 487
AccBSI	CCGCTC	1 cut(s)	995
AccI	GTMKAC	1 cut(s)	445
AciI	CCGC	4 cut(s)	110, 436, 616, 995
AclWI	GGATC	2 cut(s)	920, 953
AcoI	YGGCCR	1 cut(s)	617
AcsI	RAATTY	3 cut(s)	143, 666, 803
AcuI	CTGAAG	2 cut(s)	639, 849
AfaI	GTAC	3 cut(s)	434, 686, 787
AfiI	CCNNNNNNNGG	2 cut(s)	942, 1046
AgsI	TTSAA	3 cut(s)	178, 898, 1046
AjnI	CCWGG	7 cut(s)	307, 324, 459, 505, 675, 830, 1001
AluBI	AGCT	6 cut(s)	94, 140, 238, 814, 863, 869
AluI	AGCT	6 cut(s)	94, 140, 238, 814, 863, 869
Alw21I	GWGCWC	2 cut(s)	275, 816
Alw26I	GTCTC	4 cut(s)	172, 252, 563, 708
AlwI	GGATC	2 cut(s)	920, 953
AlwNI	CAGNNNCTG	1 cut(s)	662
AoxI	GGCC	3 cut(s)	335, 617, 977
ApeKI	GCWGC	3 cut(s)	329, 524, 964
ApoI	RAATTY	3 cut(s)	143, 666, 803
AseI	ATTAAT	1 cut(s)	888
Asp718I	GGTACC	1 cut(s)	432
AspA2I	CCTAGG	1 cut(s)	941
AspLEI	GCGC	2 cut(s)	233, 518
AspS9I	GGNCC	1 cut(s)	977
AsuHPI	GGTGA	3 cut(s)	199, 494, 833
AvrII	CCTAGG	1 cut(s)	941
BanI	GGYRCC	2 cut(s)	432, 487
BanII	GRGCYC	1 cut(s)	816
Bbv12I	GWGCWC	2 cut(s)	275, 816
BbvI	GCAGC	3 cut(s)	316, 511, 976
BccI	CCATC	4 cut(s)	154, 473, 628, 674
BciT130I	CCWGG	7 cut(s)	309, 326, 461, 507, 677, 832, 1003
BcoDI	GTCTC	4 cut(s)	172, 252, 563, 708
BfaI	CTAG	2 cut(s)	729, 942
BglII	AGATCT	1 cut(s)	550
BisI	GCNGC	4 cut(s)	330, 525, 617, 965
BlnI	CCTAGG	1 cut(s)	941
BlsI	GCNGC	4 cut(s)	331, 526, 618, 966
Bme1390I	CCNGG	7 cut(s)	309, 326, 461, 507, 677, 832, 1003
BmgT120I	GGNCC	1 cut(s)	977
BmiI	GGNNCC	2 cut(s)	434, 489
BmrFI	CCNGG	7 cut(s)	309, 326, 461, 507, 677, 832, 1003
BmrI	ACTGGG	2 cut(s)	379, 686
BmuI	ACTGGG	2 cut(s)	379, 686
BpmI	CTGGAG	1 cut(s)	55
BsaI	GGTCTC	1 cut(s)	172
BsaJI	CCNNGG	3 cut(s)	308, 941, 1002
BsaWI	WCCGGW	1 cut(s)	416
Bsc4I	CCNNNNNNNGG	2 cut(s)	942, 1046
Bse1I	ACTGG	3 cut(s)	72, 374, 692
BseBI	CCWGG	7 cut(s)	309, 326, 461, 507, 677, 832, 1003
BseDI	CCNNGG	3 cut(s)	308, 941, 1002
BseGI	GGATG	4 cut(s)	257, 456, 685, 1036
BseLI	CCNNNNNNNGG	2 cut(s)	942, 1046
BseMII	CTCAG	2 cut(s)	99, 372
BseNI	ACTGG	3 cut(s)	72, 374, 692
BseXI	GCAGC	3 cut(s)	316, 511, 976
BshFI	GGCC	3 cut(s)	337, 619, 979
BshNI	GGYRCC	2 cut(s)	432, 487
BsiHKAI	GWGCWC	2 cut(s)	275, 816
BsiSI	CCGG	1 cut(s)	417
BslFI	GGGAC	2 cut(s)	60, 64
BslI	CCNNNNNNNGG	2 cut(s)	942, 1046
BsmAI	GTCTC	4 cut(s)	172, 252, 563, 708
BsmBI	CGTCTC	1 cut(s)	708
BsmFI	GGGAC	2 cut(s)	60, 64
BsnI	GGCC	3 cut(s)	337, 619, 979
Bso31I	GGTCTC	1 cut(s)	172
Bsp1286I	GDGCHC	2 cut(s)	275, 816
Bsp143I	GATC	4 cut(s)	550, 823, 925, 945
BspACI	CCGC	4 cut(s)	110, 436, 616, 995
BspANI	GGCC	3 cut(s)	337, 619, 979
BspCNI	CTCAG	2 cut(s)	98, 373
BspHI	TCATGA	1 cut(s)	585
BspLI	GGNNCC	2 cut(s)	434, 489
BspPI	GGATC	2 cut(s)	920, 953
BspT107I	GGYRCC	2 cut(s)	432, 487
BspTNI	GGTCTC	1 cut(s)	172
BsrBI	CCGCTC	1 cut(s)	995
BsrI	ACTGG	3 cut(s)	72, 374, 692
BssECI	CCNNGG	3 cut(s)	308, 941, 1002
BssMI	GATC	4 cut(s)	550, 823, 925, 945
BssT1I	CCWWGG	1 cut(s)	941
Bst2UI	CCWGG	7 cut(s)	309, 326, 461, 507, 677, 832, 1003
Bst4CI	ACNGT	3 cut(s)	106, 267, 345
Bst6I	CTCTTC	2 cut(s)	737, 893
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstDEI	CTNAG	3 cut(s)	85, 381, 394
BstENI	CCTNNNNNAGG	1 cut(s)	940
BstF5I	GGATG	4 cut(s)	257, 456, 685, 1036
BstHHI	GCGC	2 cut(s)	233, 518
BstKTI	GATC	4 cut(s)	553, 826, 928, 948
BstMAI	GTCTC	4 cut(s)	172, 252, 563, 708
BstMBI	GATC	4 cut(s)	550, 823, 925, 945
BstMWI	GCNNNNNNNGC	3 cut(s)	524, 780, 917
BstNI	CCWGG	7 cut(s)	309, 326, 461, 507, 677, 832, 1003
BstNSI	RCATGY	1 cut(s)	197
BstSCI	CCNGG	7 cut(s)	307, 324, 459, 505, 675, 830, 1001
BstV1I	GCAGC	3 cut(s)	316, 511, 976
BstX2I	RGATCY	2 cut(s)	550, 925
BstYI	RGATCY	2 cut(s)	550, 925
BsuRI	GGCC	3 cut(s)	337, 619, 979
BtsCI	GGATG	4 cut(s)	257, 456, 685, 1036
BtsIMutI	CAGTG	2 cut(s)	699, 763
CaiI	CAGNNNCTG	1 cut(s)	662
CciI	TCATGA	1 cut(s)	585
CfoI	GCGC	2 cut(s)	233, 518
Cfr13I	GGNCC	1 cut(s)	977
CseI	GACGC	1 cut(s)	623
Csp6I	GTAC	3 cut(s)	433, 685, 786
CspCI	CAANNNNNGTGG	2 cut(s)	536, 571
CviAII	CATG	5 cut(s)	194, 199, 321, 333, 586
CviQI	GTAC	3 cut(s)	433, 685, 786
DdeI	CTNAG	3 cut(s)	85, 381, 394
DpnI	GATC	4 cut(s)	552, 825, 927, 947
DpnII	GATC	4 cut(s)	550, 823, 925, 945
EaeI	YGGCCR	1 cut(s)	617
Eam1104I	CTCTTC	2 cut(s)	737, 893
EarI	CTCTTC	2 cut(s)	737, 893
EciI	GGCGGA	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	814
Eco130I	CCWWGG	1 cut(s)	941
Eco24I	GRGCYC	1 cut(s)	816
Eco31I	GGTCTC	1 cut(s)	172
Eco53kI	GAGCTC	1 cut(s)	814
Eco57I	CTGAAG	2 cut(s)	639, 849
EcoICRI	GAGCTC	1 cut(s)	814
EcoNI	CCTNNNNNAGG	1 cut(s)	940
EcoRII	CCWGG	7 cut(s)	307, 324, 459, 505, 675, 830, 1001
EcoT14I	CCWWGG	1 cut(s)	941
EcoT38I	GRGCYC	1 cut(s)	816
ErhI	CCWWGG	1 cut(s)	941
Esp3I	CGTCTC	1 cut(s)	708
FaeI	CATG	5 cut(s)	197, 202, 324, 336, 589
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FaqI	GGGAC	2 cut(s)	60, 64
FatI	CATG	5 cut(s)	193, 198, 320, 332, 585
FblI	GTMKAC	1 cut(s)	445
Fnu4HI	GCNGC	4 cut(s)	330, 525, 617, 965
FokI	GGATG	4 cut(s)	244, 443, 692, 1023
FriOI	GRGCYC	1 cut(s)	816
Fsp4HI	GCNGC	4 cut(s)	330, 525, 617, 965
FspAI	RTGCGCAY	1 cut(s)	232
FspBI	CTAG	2 cut(s)	729, 942
FspI	TGCGCA	2 cut(s)	232, 517
GlaI	GCGC	2 cut(s)	232, 517
GluI	GCNGC	4 cut(s)	330, 525, 617, 965
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	3 cut(s)	337, 619, 979
HapII	CCGG	1 cut(s)	417
HgaI	GACGC	1 cut(s)	623
HhaI	GCGC	2 cut(s)	233, 518
Hin1II	CATG	5 cut(s)	197, 202, 324, 336, 589
Hin6I	GCGC	2 cut(s)	231, 516
HinP1I	GCGC	2 cut(s)	231, 516
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	5 cut(s)	5, 383, 510, 839, 998
HpaII	CCGG	1 cut(s)	417
HphI	GGTGA	3 cut(s)	199, 494, 833
Hpy166II	GTNNAC	2 cut(s)	352, 446
Hpy188I	TCNGA	2 cut(s)	88, 930
Hpy188III	TCNNGA	4 cut(s)	423, 586, 663, 848
Hpy8I	GTNNAC	2 cut(s)	352, 446
HpyAV	CCTTC	4 cut(s)	35, 272, 703, 1040
HpyCH4III	ACNGT	3 cut(s)	106, 267, 345
HpyCH4V	TGCA	3 cut(s)	332, 920, 1010
HpyF10VI	GCNNNNNNNGC	3 cut(s)	524, 780, 917
HpyF3I	CTNAG	3 cut(s)	85, 381, 394
Hsp92II	CATG	5 cut(s)	197, 202, 324, 336, 589
HspAI	GCGC	2 cut(s)	231, 516
KpnI	GGTACC	1 cut(s)	436
Kzo9I	GATC	4 cut(s)	550, 823, 925, 945
LmnI	GCTCC	1 cut(s)	732
Lsp1109I	GCAGC	3 cut(s)	316, 511, 976
MaeI	CTAG	2 cut(s)	729, 942
MaeIII	GTNAC	2 cut(s)	207, 1032
MalI	GATC	4 cut(s)	552, 825, 927, 947
MbiI	CCGCTC	1 cut(s)	995
MboI	GATC	4 cut(s)	550, 823, 925, 945
MboII	GAAGA	6 cut(s)	120, 128, 296, 645, 754, 910
MfeI	CAATTG	1 cut(s)	981
MflI	RGATCY	2 cut(s)	550, 925
MhlI	GDGCHC	2 cut(s)	275, 816
MluCI	AATT	6 cut(s)	143, 469, 666, 724, 803, 981
MlyI	GAGTC	1 cut(s)	392
MnlI	CCTC	9 cut(s)	88, 108, 157, 478, 552, 657, 712, 916, 946
MseI	TTAA	4 cut(s)	135, 297, 468, 888
MspI	CCGG	1 cut(s)	417
MspR9I	CCNGG	7 cut(s)	309, 326, 461, 507, 677, 832, 1003
MunI	CAATTG	1 cut(s)	981
MvaI	CCWGG	7 cut(s)	309, 326, 461, 507, 677, 832, 1003
MwoI	GCNNNNNNNGC	3 cut(s)	524, 780, 917
NdeII	GATC	4 cut(s)	550, 823, 925, 945
NlaIII	CATG	5 cut(s)	197, 202, 324, 336, 589
NlaIV	GGNNCC	2 cut(s)	434, 489
NmuCI	GTSAC	2 cut(s)	207, 1032
NsbI	TGCGCA	2 cut(s)	232, 517
NspI	RCATGY	1 cut(s)	197
PagI	TCATGA	1 cut(s)	585
PfeI	GAWTC	4 cut(s)	5, 510, 839, 998
PfoI	TCCNGGA	1 cut(s)	675
PkrI	GCNGC	4 cut(s)	331, 526, 618, 966
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
PshBI	ATTAAT	1 cut(s)	888
Psp124BI	GAGCTC	1 cut(s)	816
Psp6I	CCWGG	7 cut(s)	307, 324, 459, 505, 675, 830, 1001
PspGI	CCWGG	7 cut(s)	307, 324, 459, 505, 675, 830, 1001
PspN4I	GGNNCC	2 cut(s)	434, 489
PspPI	GGNCC	1 cut(s)	977
PstNI	CAGNNNCTG	1 cut(s)	662
PsuI	RGATCY	2 cut(s)	550, 925
RsaI	GTAC	3 cut(s)	434, 686, 787
RsaNI	GTAC	3 cut(s)	433, 685, 786
SacI	GAGCTC	1 cut(s)	816
SaqAI	TTAA	4 cut(s)	135, 297, 468, 888
SatI	GCNGC	4 cut(s)	330, 525, 617, 965
Sau3AI	GATC	4 cut(s)	550, 823, 925, 945
Sau96I	GGNCC	1 cut(s)	977
SchI	GAGTC	1 cut(s)	392
ScrFI	CCNGG	7 cut(s)	309, 326, 461, 507, 677, 832, 1003
SduI	GDGCHC	2 cut(s)	275, 816
Sse9I	AATT	6 cut(s)	143, 469, 666, 724, 803, 981
SsiI	CCGC	4 cut(s)	110, 436, 616, 995
SspMI	CTAG	2 cut(s)	729, 942
SstI	GAGCTC	1 cut(s)	816
StyD4I	CCNGG	7 cut(s)	307, 324, 459, 505, 675, 830, 1001
StyI	CCWWGG	1 cut(s)	941
TaaI	ACNGT	3 cut(s)	106, 267, 345
TasI	AATT	6 cut(s)	143, 469, 666, 724, 803, 981
TatI	WGTACW	1 cut(s)	785
TauI	GCSGC	1 cut(s)	619
TfiI	GAWTC	4 cut(s)	5, 510, 839, 998
Tru1I	TTAA	4 cut(s)	135, 297, 468, 888
Tru9I	TTAA	4 cut(s)	135, 297, 468, 888
TscAI	CASTG	2 cut(s)	699, 763
TseFI	GTSAC	2 cut(s)	207, 1032
TseI	GCWGC	3 cut(s)	329, 524, 964
Tsp45I	GTSAC	2 cut(s)	207, 1032
TspDTI	ATGAA	4 cut(s)	207, 309, 552, 722
TspGWI	ACGGA	2 cut(s)	240, 463
TspRI	CASTG	2 cut(s)	699, 763
VspI	ATTAAT	1 cut(s)	888
XagI	CCTNNNNNAGG	1 cut(s)	940
XapI	RAATTY	3 cut(s)	143, 666, 803
XceI	RCATGY	1 cut(s)	197
XmaJI	CCTAGG	1 cut(s)	941
XmiI	GTMKAC	1 cut(s)	445
XspI	CTAG	2 cut(s)	729, 942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.