Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002739

Physical Location & Seq

Genomic Coordinates Forward (+)

9303837 .. 9305189

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1089000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGTGAACCTGAGGACGGCAATGGACTCAGCCTTCTGGGACTTGAACGTTTCTTCGCCTCAGACCCTTGAGGGCTCCGCCATTGCCGTTCCTGGTGACCCATTTCCTCTCAAGGGTGCTCGAGCCAGCCGAGCCCTTAGGATTCAGCAACTCTCTCTTCTGGGTTCCCTCTTGCTCAGACCAGCTCCCTCTAACTGGTGGCTTGGATTAATTGGGCAGTTCCGCCCGAAGAAACTCTTTTCTTCTATTAAAGCTGAATTTACCAATGATGAGATGGGGGTCCCTACATTGAAGGATGTGGTGAAGCATGTCTTGGACAAGTCACTTTATTTGTTTGGATATCATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3769

Protein Analysis

117

Amino Acids

12.85

Weight (kDa)

9.69

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44640
fragaria_vesca	FvH4_7g08780 FvH4_7g08780 FvH4_7g08780 FvH4_7g08800
malus_domestica	MD02G1224900.v1.1 MD07G1088800.v1.1 MD07G1089000.v1.1 MD07G1089100.v1.1 MD07G1089700.v1.1 MD07G1089800.v1.1 MD07G1089900.v1.1 MD07G1090600.v1.1
prunus_persica	Prupe.2G115700_v2.0.a1 Prupe.2G115700_v2.0.a1
pyrus_communis	pycom02g17920 pycom02g17930 pycom02g19310 pycom07g07130
rosa_chinensis	RchiOBHm_Chr1g0344071
rosa_laevigata	RLG00000028928
rosa_multiflora	Rmu_sc0000251.1_g000013 Rmu_sc0000251.1_g000017 Rmu_sc0002276.1_g000004 Rmu_sc0002276.1_g000007 Rmu_sc0002297.1_g000007 Rmu_sc0002297.1_g000013 Rmu_ssc0000434.1_g000008
rosa_roxburghii	Rroxscaffold_4G00310080
rosa_rugosa	Rorug01G0171400 Rorug01G0171500 Rorug05G0553700 Rorug05G0553800
rosa_samantha	Rh1AG188100 Rh1BG154200 Rh1CG173600 Rh1DG186300 Rh5BG101000
rosa_wichuraiana	Rw1G015480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	78, 223
AclI	AACGTT	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	257
AfiI	CCNNNNNNNGG	3 cut(s)	16, 113, 195
AgsI	TTSAA	2 cut(s)	46, 292
AjnI	CCWGG	1 cut(s)	91
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
AluBI	AGCT	2 cut(s)	185, 254
AluI	AGCT	2 cut(s)	185, 254
Alw21I	GWGCWC	1 cut(s)	121
Ama87I	CYCGRG	1 cut(s)	120
ApoI	RAATTY	1 cut(s)	257
AseI	ATTAAT	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	3 cut(s)	16, 107, 313
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	280
AxyI	CCTNAGG	2 cut(s)	11, 137
BanII	GRGCYC	2 cut(s)	77, 136
Bbv12I	GWGCWC	1 cut(s)	121
BccI	CCATC	1 cut(s)	268
BceAI	ACGGC	2 cut(s)	33, 71
BciT130I	CCWGG	1 cut(s)	93
Bme1390I	CCNGG	1 cut(s)	93
Bme18I	GGWCC	1 cut(s)	280
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	4 cut(s)	76, 166, 281, 282
BmrFI	CCNGG	1 cut(s)	93
BpuEI	CTTGAG	2 cut(s)	89, 95
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 113, 195
Bse1I	ACTGG	1 cut(s)	200
Bse21I	CCTNAGG	2 cut(s)	11, 137
Bse3DI	GCAATG	2 cut(s)	27, 81
BseBI	CCWGG	1 cut(s)	93
BseGI	GGATG	2 cut(s)	301, 343
BseLI	CCNNNNNNNGG	3 cut(s)	16, 113, 195
BseMI	GCAATG	2 cut(s)	27, 81
BseMII	CTCAG	3 cut(s)	42, 74, 190
BseNI	ACTGG	1 cut(s)	200
BsiHKAI	GWGCWC	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	120
BslFI	GGGAC	2 cut(s)	53, 266
BslI	CCNNNNNNNGG	3 cut(s)	16, 113, 195
BsmFI	GGGAC	2 cut(s)	53, 266
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	3 cut(s)	77, 121, 136
BspACI	CCGC	2 cut(s)	78, 223
BspCNI	CTCAG	3 cut(s)	41, 73, 189
BspLI	GGNNCC	4 cut(s)	76, 166, 281, 282
BsrDI	GCAATG	2 cut(s)	27, 81
BsrI	ACTGG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	93
Bst6I	CTCTTC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	5 cut(s)	11, 28, 60, 137, 176
BstEII	GGTNACC	1 cut(s)	95
BstF5I	GGATG	2 cut(s)	301, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	1 cut(s)	93
BstNSI	RCATGY	1 cut(s)	311
BstPI	GGTNACC	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	91
Bsu36I	CCTNAGG	2 cut(s)	11, 137
BtsCI	GGATG	2 cut(s)	301, 343
Cac8I	GCNNGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	280
CviAII	CATG	1 cut(s)	308
CviJI	RGCY	8 cut(s)	32, 75, 125, 129, 134, 185, 202, 254
CviKI_1	RGCY	8 cut(s)	32, 75, 125, 129, 134, 185, 202, 254
DdeI	CTNAG	5 cut(s)	11, 28, 60, 137, 176
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
EciI	GGCGGA	2 cut(s)	67, 212
Eco24I	GRGCYC	2 cut(s)	77, 136
Eco32I	GATATC	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	280
Eco81I	CCTNAGG	2 cut(s)	11, 137
Eco88I	CYCGRG	1 cut(s)	120
Eco91I	GGTNACC	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	280
EcoO65I	GGTNACC	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	91
EcoRV	GATATC	1 cut(s)	341
EcoT38I	GRGCYC	2 cut(s)	77, 136
FaeI	CATG	1 cut(s)	311
FaiI	YATR	2 cut(s)	309, 349
FalI	AAGNNNNNCTT	4 cut(s)	221, 253, 296, 328
FaqI	GGGAC	2 cut(s)	53, 266
FatI	CATG	1 cut(s)	307
FokI	GGATG	2 cut(s)	308, 330
FriOI	GRGCYC	2 cut(s)	77, 136
Hin1II	CATG	1 cut(s)	311
HinfI	GANTC	2 cut(s)	26, 142
HphI	GGTGA	3 cut(s)	16, 107, 313
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	2 cut(s)	63, 179
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	2 cut(s)	43, 286
HpyCH4IV	ACGT	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	5 cut(s)	11, 28, 60, 137, 176
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	311
KflI	GGGWCCC	1 cut(s)	280
LmnI	GCTCC	2 cut(s)	80, 190
LpnPI	CCDG	8 cut(s)	22, 23, 78, 105, 139, 146, 181, 195
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	95, 321
MboII	GAAGA	4 cut(s)	45, 149, 234, 241
MhlI	GDGCHC	3 cut(s)	77, 121, 136
MluCI	AATT	2 cut(s)	210, 257
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	6 cut(s)	6, 64, 69, 117, 179, 199
MseI	TTAA	2 cut(s)	209, 249
MspR9I	CCNGG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	131
NlaIII	CATG	1 cut(s)	311
NlaIV	GGNNCC	4 cut(s)	76, 166, 281, 282
NmeAIII	GCCGAG	1 cut(s)	155
NmuCI	GTSAC	2 cut(s)	95, 321
NspI	RCATGY	1 cut(s)	311
PaeR7I	CTCGAG	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	142
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
PpuMI	RGGWCCY	1 cut(s)	280
PshBI	ATTAAT	1 cut(s)	209
Psp1406I	AACGTT	1 cut(s)	48
Psp5II	RGGWCCY	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	91
PspEI	GGTNACC	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	4 cut(s)	76, 166, 281, 282
PspPI	GGNCC	1 cut(s)	280
PspPPI	RGGWCCY	1 cut(s)	280
PspXI	VCTCGAGB	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	209, 249
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	93
SduI	GDGCHC	3 cut(s)	77, 121, 136
SetI	ASST	4 cut(s)	12, 51, 187, 256
Sfr274I	CTCGAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	280
SlaI	CTCGAG	1 cut(s)	120
SmlI	CTYRAG	3 cut(s)	68, 110, 120
SmoI	CTYRAG	3 cut(s)	68, 110, 120
Sse9I	AATT	2 cut(s)	210, 257
SsiI	CCGC	2 cut(s)	78, 223
StyD4I	CCNGG	1 cut(s)	91
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	121
TasI	AATT	2 cut(s)	210, 257
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	2 cut(s)	209, 249
Tru9I	TTAA	2 cut(s)	209, 249
TseFI	GTSAC	2 cut(s)	95, 321
Tsp45I	GTSAC	2 cut(s)	95, 321
VpaK11BI	GGWCC	1 cut(s)	280
VspI	ATTAAT	1 cut(s)	209
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	1 cut(s)	311
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XhoI	CTCGAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.