pycom02g17930

Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0002739
Physical Location & Seq
Reverse (-)
16201572 .. 16202120
549 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g17930.1

Sequence Viewer

Length: 306 bp
ATGGACTCAGCCTTCTGGGACTTGAACATTTTTTCGCCTCAGACCCTTAAGGGCTCCGCCAAGGCCGTTCCGGTCGACCCATTTCCTCTTGAAGGTACACGAGCCAACCGAGCCCTTAGGATTCAGCAACTGTCTCTTCTGGGAAATGGGTTCCCTTTGGGTGTTATACCTTCCTACTCCCCCACTTCTAACAGGGACTTGGGTTCTTTCTCTCTCCAGTCCCTCTTGCTCAGACCAGCTACCTCTAAGGCTCTAACTGGAAAAAGGTTAGGAAAGATAATTTGGCTCCTGTTTCCTGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3769

Protein Analysis

102

Amino Acids

11.04

Weight (kDa)

10.36

Isoelectric Point (pI)

53.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 75
AciI CCGC 1 cut(s) 57
AfaI GTAC 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 92
AflII CTTAAG 1 cut(s) 47
AgsI TTSAA 2 cut(s) 25, 92
AjuI GAANNNNNNNTTGG 2 cut(s) 265, 297
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
Alw26I GTCTC 1 cut(s) 138
AlwNI CAGNNNCTG 1 cut(s) 130
AoxI GGCC 1 cut(s) 63
AxyI CCTNAGG 1 cut(s) 116
BanII GRGCYC 2 cut(s) 56, 115
BauI CACGAG 1 cut(s) 99
BceAI ACGGC 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 138
BfrI CTTAAG 1 cut(s) 47
BmiI GGNNCC 3 cut(s) 55, 152, 287
BpmI CTGGAG 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse1I ACTGG 2 cut(s) 217, 262
Bse21I CCTNAGG 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMII CTCAG 4 cut(s) 21, 53, 244, 288
BseNI ACTGG 2 cut(s) 217, 262
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 1 cut(s) 65
BsiEI CGRYCG 1 cut(s) 75
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 3 cut(s) 32, 205, 209
BslI CCNNNNNNNGG 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 3 cut(s) 32, 205, 209
BsnI GGCC 1 cut(s) 65
Bsp1286I GDGCHC 2 cut(s) 56, 115
BspACI CCGC 1 cut(s) 57
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 4 cut(s) 20, 52, 243, 289
BspLI GGNNCC 3 cut(s) 55, 152, 287
BspTI CTTAAG 1 cut(s) 47
BsrI ACTGG 2 cut(s) 217, 262
BssECI CCNNGG 1 cut(s) 60
BssSI CACGAG 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 60
Bst2BI CACGAG 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 141
BstAFI CTTAAG 1 cut(s) 47
BstDEI CTNAG 6 cut(s) 7, 39, 116, 230, 246, 297
BstENI CCTNNNNNAGG 1 cut(s) 90
BstMAI GTCTC 1 cut(s) 138
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 1 cut(s) 110
Bsu36I CCTNAGG 1 cut(s) 116
BsuRI GGCC 1 cut(s) 65
CaiI CAGNNNCTG 1 cut(s) 130
Csp6I GTAC 1 cut(s) 96
CviJI RGCY 8 cut(s) 11, 54, 65, 104, 113, 239, 251, 286
CviKI_1 RGCY 8 cut(s) 11, 54, 65, 104, 113, 239, 251, 286
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 6 cut(s) 7, 39, 116, 230, 246, 297
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
EciI GGCGGA 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 60
Eco24I GRGCYC 2 cut(s) 56, 115
Eco81I CCTNAGG 1 cut(s) 116
EcoNI CCTNNNNNAGG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 60
EcoT38I GRGCYC 2 cut(s) 56, 115
ErhI CCWWGG 1 cut(s) 60
FaiI YATR 1 cut(s) 167
FaqI GGGAC 3 cut(s) 32, 205, 209
FblI GTMKAC 1 cut(s) 75
FriOI GRGCYC 2 cut(s) 56, 115
GsuI CTGGAG 1 cut(s) 200
HaeIII GGCC 1 cut(s) 65
HapII CCGG 1 cut(s) 71
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 2 cut(s) 5, 121
HpaII CCGG 1 cut(s) 71
Hpy166II GTNNAC 2 cut(s) 76, 98
Hpy188I TCNGA 2 cut(s) 42, 233
Hpy188III TCNNGA 2 cut(s) 89, 296
Hpy8I GTNNAC 2 cut(s) 76, 98
HpyAV CCTTC 3 cut(s) 22, 86, 180
HpyCH4III ACNGT 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 6 cut(s) 7, 39, 116, 230, 246, 297
LmnI GCTCC 2 cut(s) 59, 291
LpnPI CCDG 7 cut(s) 84, 125, 178, 230, 243, 249, 302
MboII GAAGA 1 cut(s) 128
MhlI GDGCHC 2 cut(s) 56, 115
MluCI AATT 1 cut(s) 279
MnlI CCTC 4 cut(s) 48, 96, 233, 253
MseI TTAA 1 cut(s) 48
MspCI CTTAAG 1 cut(s) 47
MspI CCGG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 110
NlaIV GGNNCC 3 cut(s) 55, 152, 287
PcsI WCGNNNNNNNCGW 1 cut(s) 106
PfeI GAWTC 1 cut(s) 121
PspN4I GGNNCC 3 cut(s) 55, 152, 287
PstNI CAGNNNCTG 1 cut(s) 130
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SalI GTCGAC 1 cut(s) 74
SaqAI TTAA 1 cut(s) 48
SduI GDGCHC 2 cut(s) 56, 115
SetI ASST 5 cut(s) 97, 172, 241, 245, 269
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 1 cut(s) 279
SsiI CCGC 1 cut(s) 57
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 132
TaqI TCGA 1 cut(s) 75
TasI AATT 1 cut(s) 279
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
Vha464I CTTAAG 1 cut(s) 47
XagI CCTNNNNNAGG 1 cut(s) 90
XmiI GTMKAC 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.